View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4545_low_1 (Length: 392)
Name: NF4545_low_1
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4545_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 42302372 - 42302014
Alignment:
| Q |
14 |
agagctagtgaggatcatagtaatttagatcaaagtctttgagtctaatcttcactacaatcagggaagcttgtcctgtaaagcaaacaatactaaatca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42302372 |
agagctagtgaggatcatagtaatttagatcaaagtctttgagtctaatcttcactacaatcagggaagcttgtcctgtaaagcaaacaatactagatca |
42302273 |
T |
|
| Q |
114 |
aatagtgaaatgaatgtctatgtactagttgatctaattgttgtatttgtactggtttatctaaaattgtttgctttagagacagtgcttcattgtcctt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42302272 |
aatagtgaaatgaatgtctatgtactagttgatctaattgttgtatttgtactggttgatctaaaattgtttgctttagagacggtgcttcattgtcctt |
42302173 |
T |
|
| Q |
214 |
atagtcaaagattagactttgaaatactttgatcaaaattgaatataaggatatttttcaacatattttaatgagtccgacatgtgttattaaactcata |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42302172 |
atagtc-aagattagactttgaaatactttgatcaaaattgaatataaggatatttttcaacatattttaatgagtccgacatgtgttattaaactcaca |
42302074 |
T |
|
| Q |
314 |
agtgatgtaacaaaagaatattggannnnnnnaaagataaacattattgaatatttataa |
373 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42302073 |
agtgatgtaacaaaagaatattggatttttttaaagataaacattattgaatatttataa |
42302014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 338
Target Start/End: Original strand, 42301667 - 42301751
Alignment:
| Q |
253 |
tgaatataaggatatttttcaacatattttaatgagtccgacatgtgttattaaactcataagtgatgtaacaaaagaatattgga |
338 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| ||| |||||||||||||||| ||||| || |||||||| || ||||||||| |
|
|
| T |
42301667 |
tgaatataaggatatttttcaagataatttaataagtttgacatgtgttattaaattcatatgtaatgtaacagaa-aatattgga |
42301751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3287 times since January 2019
Visitors: 8679