View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4545_low_11 (Length: 254)
Name: NF4545_low_11
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4545_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 27583980 - 27584211
Alignment:
| Q |
18 |
caagtaaggtccataggagagttacagaagctgagcatcttcccctcaccttggtgacagccattttcctaacaggtctgattacaataacatcatcgtc |
117 |
Q |
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| T |
27583980 |
caagtgaggtccataggagagttacagaagctgagcatcttcc--tcaccttggtgacagccattttcctaacaggcatgattacaataacatcatcatc |
27584077 |
T |
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| Q |
118 |
agcaacatcagcggtagatgcaagagacagtctatattccatgatgttctcttttgggatcttcctccacttaacttttatgtccttcagcttacgcttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27584078 |
agcaacatcagcggtagatgcaagagacagtctatattccatgatgttttcttttgggatcttcctccacttaacttttgtgtccttcagcttacgcttc |
27584177 |
T |
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| Q |
218 |
tcgctgtttcgcttttgcaagaccatcatttcat |
251 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
27584178 |
tcgctgtttcgcttttgcaagaccatcatttcat |
27584211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 27597829 - 27598035
Alignment:
| Q |
18 |
caagtaaggtccataggagagttacagaagctgagcatcttcccctcaccttggtgacagccattttcctaacaggtctgattacaataacatcatcgtc |
117 |
Q |
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||||| |||||||| | |||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
27597829 |
caagtgaggtccatggaagagttgcagaagctgagcatcctcc--tcaccttggtgacagccattttcctaacaggcctgattataataacatcatc--- |
27597923 |
T |
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| Q |
118 |
agcaacatcagcggtagatgcaagagacagtctatattccatgatgttctcttttgggatcttcctccacttaacttttatgtccttcagcttacgcttc |
217 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||| |||||||| | | ||||| ||||||||| ||||||||||||||||||||| |
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| T |
27597924 |
agcaacatcagcagtagatgcaagacacagtctatattccatgatggcctcttttgtgtttttcctttgcttaactttcatgtccttcagcttacgcttc |
27598023 |
T |
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| Q |
218 |
tcgctgtttcgc |
229 |
Q |
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| T |
27598024 |
tccctgtttcgc |
27598035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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