View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4545_low_13 (Length: 239)
Name: NF4545_low_13
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4545_low_13 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 39264323 - 39264545
Alignment:
| Q |
17 |
atttctcatatgattttgctaattccagattgagagaaactatgattctaactcatagattctccaaaaacatatttcgtacaaaagagctatttgcatg |
116 |
Q |
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| T |
39264323 |
atttctcatatgattttgctaattccagattgagagaaactatgattctaactcatagattctccaaaaacatatttcgtacaaaagagctatttgcatg |
39264422 |
T |
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| Q |
117 |
taggacaattcagatgctgatttcaggactagttttaggatccatcttttgtaacctcaaagatgatctaagaggaacacaagaaagggttggtctattt |
216 |
Q |
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| T |
39264423 |
caggacaattcagatgctgatttcaggactagttttaggatccatcttttgtaacctcaaagatgatctaagaggaacacaagaaagggttggtctattt |
39264522 |
T |
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| Q |
217 |
gctttcatattaacttttctgtt |
239 |
Q |
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| T |
39264523 |
gctttcatattaacttttctgtt |
39264545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 27 - 239
Target Start/End: Original strand, 44068051 - 44068263
Alignment:
| Q |
27 |
tgattttgctaattccagattgagagaaactatgattctaactcatagattctccaaaaacatatttcgtacaaaagagctatttgcatgtaggacaatt |
126 |
Q |
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| T |
44068051 |
tgattatgcgaattctagattgagagaaactatgattctagctcataggttctcaaaaaatattttccgtacaaaggagctctttgcatttaggactatt |
44068150 |
T |
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| Q |
127 |
cagatgctgatttcaggactagttttaggatccatcttttgtaacctcaaagatgatctaagaggaacacaagaaagggttggtctatttgctttcatat |
226 |
Q |
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| T |
44068151 |
cagatgctgatttcagggctggttttaggatccatctttggtaatctcaaagatggtctcgtgggagcagaacaaagggttggtctatttgctttcattt |
44068250 |
T |
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| Q |
227 |
taacttttctgtt |
239 |
Q |
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| T |
44068251 |
taacgtttttgtt |
44068263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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