View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4545_low_14 (Length: 233)

Name: NF4545_low_14
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4545_low_14
NF4545_low_14
[»] chr3 (25 HSPs)
chr3 (1-86)||(2226998-2227083)
chr3 (1-53)||(3676870-3676922)
chr3 (1-53)||(3686005-3686057)
chr3 (1-53)||(6971030-6971082)
chr3 (1-53)||(12702882-12702934)
chr3 (1-53)||(15985450-15985502)
chr3 (1-53)||(16469361-16469413)
chr3 (1-53)||(30013447-30013499)
chr3 (1-53)||(30022873-30022925)
chr3 (1-53)||(41441536-41441588)
chr3 (1-53)||(6956750-6956802)
chr3 (1-53)||(14738091-14738143)
chr3 (1-53)||(17216849-17216901)
chr3 (1-53)||(27874099-27874151)
chr3 (1-50)||(16016160-16016209)
chr3 (1-53)||(20435872-20435925)
chr3 (1-53)||(20449798-20449851)
chr3 (1-53)||(41433038-41433091)
chr3 (1-53)||(12997854-12997905)
chr3 (1-49)||(47730488-47730536)
chr3 (1-80)||(14322675-14322752)
chr3 (1-53)||(12559198-12559251)
chr3 (6-63)||(46372988-46373045)
chr3 (6-63)||(46387115-46387172)
chr3 (1-53)||(49965286-49965339)
[»] chr7 (28 HSPs)
chr7 (1-86)||(355766-355851)
chr7 (1-61)||(37287978-37288038)
chr7 (1-53)||(7341959-7342011)
chr7 (1-53)||(12585726-12585778)
chr7 (1-53)||(16263774-16263826)
chr7 (1-53)||(16280467-16280519)
chr7 (1-53)||(16294669-16294721)
chr7 (1-53)||(17465089-17465141)
chr7 (1-53)||(17588073-17588125)
chr7 (1-53)||(23445692-23445744)
chr7 (1-53)||(26125546-26125598)
chr7 (1-86)||(46298833-46298922)
chr7 (119-170)||(355681-355732)
chr7 (1-53)||(3422381-3422433)
chr7 (1-53)||(3431537-3431589)
chr7 (1-53)||(4889228-4889280)
chr7 (5-53)||(12595500-12595548)
chr7 (1-53)||(16271440-16271492)
chr7 (1-38)||(12606058-12606095)
chr7 (1-53)||(791953-792005)
chr7 (132-166)||(10582068-10582102)
chr7 (1-53)||(12979825-12979877)
chr7 (5-53)||(807738-807786)
chr7 (1-53)||(6109433-6109485)
chr7 (1-35)||(12392497-12392531)
chr7 (1-63)||(30363265-30363327)
chr7 (1-63)||(30377330-30377392)
chr7 (1-57)||(42629485-42629541)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-86)||(32430-32519)
[»] chr4 (18 HSPs)
chr4 (1-84)||(8816106-8816189)
chr4 (1-53)||(3396245-3396297)
chr4 (1-53)||(40815623-40815675)
chr4 (1-53)||(55790929-55790981)
chr4 (4-53)||(736455-736504)
chr4 (1-53)||(3358584-3358636)
chr4 (1-53)||(3368250-3368302)
chr4 (1-53)||(5063555-5063607)
chr4 (8-53)||(10219612-10219657)
chr4 (1-61)||(49891778-49891838)
chr4 (4-49)||(33613781-33613826)
chr4 (1-53)||(22140057-22140109)
chr4 (1-53)||(22151971-22152023)
chr4 (1-53)||(47877714-47877765)
chr4 (5-38)||(739781-739814)
chr4 (5-38)||(745973-746006)
chr4 (1-31)||(11599740-11599770)
chr4 (1-53)||(20840861-20840913)
[»] chr5 (11 HSPs)
chr5 (1-62)||(30250558-30250619)
chr5 (1-53)||(21746581-21746633)
chr5 (1-53)||(24060544-24060596)
chr5 (1-53)||(34461419-34461471)
chr5 (1-53)||(34475676-34475728)
chr5 (1-53)||(37577995-37578047)
chr5 (1-53)||(37587105-37587157)
chr5 (1-53)||(36433884-36433936)
chr5 (1-57)||(21829344-21829400)
chr5 (1-57)||(26546575-26546631)
chr5 (1-53)||(38226620-38226671)
[»] scaffold0799 (1 HSPs)
scaffold0799 (1-53)||(4512-4564)
[»] scaffold0361 (1 HSPs)
scaffold0361 (1-53)||(2382-2434)
[»] scaffold0125 (2 HSPs)
scaffold0125 (1-53)||(17182-17234)
scaffold0125 (1-53)||(10260-10312)
[»] scaffold0051 (1 HSPs)
scaffold0051 (1-53)||(56830-56882)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-53)||(56569-56621)
[»] scaffold0014 (2 HSPs)
scaffold0014 (1-53)||(170218-170270)
scaffold0014 (1-53)||(186722-186774)
[»] chr8 (13 HSPs)
chr8 (1-53)||(6665087-6665139)
chr8 (1-53)||(6672751-6672803)
chr8 (1-53)||(25373093-25373145)
chr8 (1-53)||(25706770-25706822)
chr8 (1-49)||(12846601-12846649)
chr8 (5-53)||(25402261-25402309)
chr8 (1-53)||(16738658-16738710)
chr8 (1-53)||(20026255-20026307)
chr8 (1-53)||(25644776-25644828)
chr8 (10-53)||(22105824-22105867)
chr8 (1-53)||(23640425-23640477)
chr8 (1-49)||(13387253-13387300)
chr8 (1-57)||(27806577-27806633)
[»] chr6 (22 HSPs)
chr6 (1-53)||(20073380-20073432)
chr6 (1-53)||(27643756-27643808)
chr6 (1-53)||(1628172-1628224)
chr6 (1-53)||(22402925-22402977)
chr6 (1-49)||(35025778-35025826)
chr6 (1-53)||(18869526-18869578)
chr6 (1-61)||(22597847-22597907)
chr6 (1-53)||(34270842-34270894)
chr6 (4-53)||(2890493-2890542)
chr6 (1-53)||(26844642-26844693)
chr6 (1-71)||(19714995-19715063)
chr6 (1-71)||(28701555-28701623)
chr6 (1-50)||(2408655-2408704)
chr6 (1-53)||(33253672-33253724)
chr6 (1-53)||(12393576-12393628)
chr6 (1-59)||(9129964-9130022)
chr6 (1-59)||(9143800-9143858)
chr6 (1-71)||(19721188-19721256)
chr6 (1-80)||(18386909-18386986)
chr6 (1-53)||(18910442-18910494)
chr6 (1-53)||(12664002-12664053)
chr6 (1-49)||(29600120-29600167)
[»] chr2 (13 HSPs)
chr2 (1-53)||(35082297-35082349)
chr2 (1-53)||(28459628-28459680)
chr2 (1-53)||(21767892-21767945)
chr2 (1-53)||(21749164-21749217)
chr2 (1-53)||(21753741-21753794)
chr2 (1-53)||(24868282-24868334)
chr2 (1-80)||(18971885-18971963)
chr2 (6-62)||(13037636-13037692)
chr2 (1-53)||(18501570-18501621)
chr2 (1-49)||(27342116-27342163)
chr2 (1-49)||(27343226-27343273)
chr2 (1-53)||(40385749-40385800)
chr2 (1-53)||(40389339-40389390)
[»] chr1 (8 HSPs)
chr1 (1-53)||(18702888-18702940)
chr1 (1-53)||(27171160-27171212)
chr1 (1-53)||(49934430-49934482)
chr1 (1-53)||(2686825-2686878)
chr1 (1-53)||(20312105-20312157)
chr1 (1-80)||(44831218-44831299)
chr1 (1-53)||(18099654-18099706)
chr1 (1-62)||(20640368-20640429)
[»] scaffold0278 (2 HSPs)
scaffold0278 (4-53)||(14134-14183)
scaffold0278 (4-53)||(17468-17517)
[»] scaffold0582 (1 HSPs)
scaffold0582 (1-53)||(6001-6053)
[»] scaffold0098 (1 HSPs)
scaffold0098 (1-53)||(28861-28913)
[»] scaffold0560 (1 HSPs)
scaffold0560 (1-48)||(10683-10730)
[»] scaffold0019 (2 HSPs)
scaffold0019 (1-48)||(12213-12260)
scaffold0019 (1-32)||(20469-20500)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-53)||(299161-299212)
[»] scaffold0422 (1 HSPs)
scaffold0422 (1-80)||(4566-4645)
[»] scaffold0152 (1 HSPs)
scaffold0152 (1-62)||(15609-15671)
[»] scaffold2175 (1 HSPs)
scaffold2175 (1-80)||(511-588)
[»] scaffold0974 (1 HSPs)
scaffold0974 (1-46)||(3392-3436)
[»] scaffold0043 (2 HSPs)
scaffold0043 (1-80)||(91629-91706)
scaffold0043 (1-53)||(31976-32027)
[»] scaffold1699 (1 HSPs)
scaffold1699 (1-53)||(35-86)
[»] scaffold0243 (1 HSPs)
scaffold0243 (1-52)||(22855-22906)
[»] scaffold0107 (1 HSPs)
scaffold0107 (1-53)||(1054-1106)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-79)||(360890-360969)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 2227083 - 2226998
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaattagagtggtgattaaataaaag 86  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2227083 tacgagaacctcttgatttcatttaactttttgtgcttaaacttgcttgctttaaaaaagaaattagagtggtgattaaataaaag 2226998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3676922 - 3676870
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3676922 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 3676870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3686057 - 3686005
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3686057 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 3686005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6971030 - 6971082
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6971030 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 6971082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12702934 - 12702882
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12702934 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 12702882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15985450 - 15985502
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15985450 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 15985502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16469361 - 16469413
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16469361 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 16469413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30013499 - 30013447
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30013499 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 30013447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 30022925 - 30022873
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30022925 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 30022873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41441588 - 41441536
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41441588 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 41441536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6956750 - 6956802
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6956750 tacgagaacctcttgattttatttaactttttgtgcttaaatttgcttgcttt 6956802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 14738091 - 14738143
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14738091 tacgagaacctcttgattttatttaaatttttgtgcttaaacttgcttgcttt 14738143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17216849 - 17216901
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17216849 tacgagaaccttttgattttatttaactttttgtgcttaaacttgcttgcttt 17216901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27874151 - 27874099
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27874151 tacgagaacctcttgattttatttaattttttgtgcttaaacttgcttgcttt 27874099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16016160 - 16016209
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgc 50  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16016160 tacgagaacctcttgattttatttaactttttgttcttaaacttgcttgc 16016209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20435925 - 20435872
Alignment:
Q  1 tacgagaacctcttgatttt-atttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20435925 tacgagaacctcttgatttttatttaactttttgtgcttaaacttgcttgcttt 20435872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20449851 - 20449798
Alignment:
Q  1 tacgagaacctcttgatttt-atttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20449851 tacgagaacctcttgatttttatttaactttttgtgcttaaacttgcttgcttt 20449798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41433091 - 41433038
Alignment:
Q  1 tacgagaacctcttgatttt-atttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41433091 tacgagaacctcttgatttttatttaactttttgtgcttaaacttgcttgcttt 41433038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 12997854 - 12997905
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  12997854 tacgagaacctcttgattttatttaac-ttttgtgcttgaacttgcttgcttt 12997905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 47730536 - 47730488
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttg 49  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  47730536 tacgagaacctcttgattttgtttaactttttgtgcttaaacttacttg 47730488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 14322752 - 14322675
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaattagagtggtgattaaa 80  Q
    |||| ||||||||||||||||||||| ||  ||||||  |||||||||||  |||||| ||||||| |||| ||||||||    
T  14322752 tacgggaacctcttgattttatttaatttaatgtgctataacttgcttgc--taaaaaggaaattaaagtgatgattaaa 14322675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12559251 - 12559198
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgcttt 53  Q
    |||| ||||||||||||||||||||| ||  |||||| ||||||||||||||||    
T  12559251 tacgggaacctcttgattttatttaatttaatgtgctgtaaacttgcttgcttt 12559198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 46373045 - 46372988
Alignment:
Q  6 gaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaa 63  Q
    ||||||||||||||||||||| ||  ||||||  ||||||||||||||  ||||||||    
T  46373045 gaacctcttgattttatttaatttaatgtgctataacttgcttgcttttgaaaagaaa 46372988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 46387172 - 46387115
Alignment:
Q  6 gaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaa 63  Q
    ||||||||||||||||||||| ||  ||||||  ||||||||||||||  ||||||||    
T  46387172 gaacctcttgattttatttaatttaatgtgctataacttgcttgcttttgaaaagaaa 46387115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49965286 - 49965339
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgcttt 53  Q
    |||| ||||||||||||||||||||| ||  |||||| ||||||||||||||||    
T  49965286 tacgggaacctcttgattttatttaatttaatgtgctataaacttgcttgcttt 49965339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 355851 - 355766
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaattagagtggtgattaaataaaag 86  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  355851 tacgtgaacttcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaattagagtggtgattaaataaaag 355766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 37288038 - 37287978
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaaga 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37288038 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttttaaaaaga 37287978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 7341959 - 7342011
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7341959 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 7342011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12585778 - 12585726
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12585778 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 12585726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16263774 - 16263826
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16263774 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 16263826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16280467 - 16280519
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16280467 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 16280519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16294669 - 16294721
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16294669 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 16294721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17465141 - 17465089
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17465141 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 17465089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 17588073 - 17588125
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17588073 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 17588125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23445744 - 23445692
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23445744 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 23445692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26125598 - 26125546
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26125598 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 26125546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 46298833 - 46298922
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt----aaaaaagaaattagagtggtgattaaataaaag 86  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||    | ||||||||||||  |||||||||||||||||    
T  46298833 tacgagaacctcttgattttaattaactttttgtgcttaaacttgtttgctttttaaagaaaagaaattagtatggtgattaaataaaag 46298922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 355732 - 355681
Alignment:
Q  119 attgatttggaatagttatttagcactacatcagaatcaccaccactcaatg 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  355732 attgatttggaatagttatttagcactacatcagaatcaccaccactcaatg 355681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3422381 - 3422433
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3422381 tacgagaacctcctgattttatttaactttttgtgcttaaacttgcttgcttt 3422433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3431537 - 3431589
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3431537 tacgagaacctcctgattttatttaactttttgtgcttaaacttgcttgcttt 3431589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4889228 - 4889280
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4889228 tacgagaacctcttgattttatttaaatttttgtgcttaaacttgcttgcttt 4889280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 12595548 - 12595500
Alignment:
Q  5 agaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12595548 agaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 12595500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 16271440 - 16271492
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16271440 tacgagaacctcttgattttatttaactttttgtgcttaaactttcttgcttt 16271492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12606058 - 12606095
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgctt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12606058 tacgagaacctcttgattttatttaactttttgtgctt 12606095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 791953 - 792005
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||||| || ||  ||||||||||||||    
T  791953 tacgagaacctcttgattttatttaacttttggtactataacttgcttgcttt 792005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 10582102 - 10582068
Alignment:
Q  132 agttatttagcactacatcagaatcaccaccactc 166  Q
    |||||||||||||||||||||||||||||||||||    
T  10582102 agttatttagcactacatcagaatcaccaccactc 10582068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12979877 - 12979825
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgcttt 53  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  12979877 tacgggaacctcttgattttatttaa-tttttgtgctataaacttgcttgcttt 12979825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 807738 - 807786
Alignment:
Q  5 agaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||| ||||||||||||||||||| |||||  ||||||||||||||    
T  807738 agaaccttttgattttatttaacttttggtgctataacttgcttgcttt 807786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6109485 - 6109433
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||| ||||||||||||| ||||||||||| |||||| ||||||| |||||||    
T  6109485 tacgggaacctcttgattatatttaactttgtgtgctgaaacttgattgcttt 6109433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12392497 - 12392531
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtg 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  12392497 tacgagaacctcttgattttattcaactttttgtg 12392531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30363265 - 30363327
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaa 63  Q
    |||||||||||||||||||||||||| |   ||||||  ||||||||||||||  ||||||||    
T  30363265 tacgagaacctcttgattttatttaattcaatgtgctataacttgcttgcttttgaaaagaaa 30363327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30377330 - 30377392
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaa 63  Q
    |||||||||||||||||||||||||| |   ||||||  ||||||||||||||  ||||||||    
T  30377330 tacgagaacctcttgattttatttaattcaatgtgctataacttgcttgcttttgaaaagaaa 30377392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42629485 - 42629541
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaa 57  Q
    |||| ||||||||||||||||||||| ||  ||||||  ||||||||||||| ||||    
T  42629485 tacgggaacctcttgattttatttaagttaatgtgctataacttgcttgcttgaaaa 42629541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 32430 - 32519
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt----aaaaaagaaattagagtggtgattaaataaaag 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||  |||||||||||||||||    
T  32430 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttttcaaagaaaagaaattagtatggtgattaaataaaag 32519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8816106 - 8816189
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaa-aaaagaaattagagtggtgattaaataaa 84  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||    
T  8816106 tacgagaacctcttgattt-atttaattttttgtgcttaaacttgcttgctttaagaaaagaaattagagtggttattatataaa 8816189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 3396245 - 3396297
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3396245 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 3396297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40815623 - 40815675
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40815623 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 40815675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 55790981 - 55790929
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55790981 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 55790929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 736455 - 736504
Alignment:
Q  4 gagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  736455 gagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 736504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3358636 - 3358584
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3358636 tacgagaacctcctgattttatttaactttttgtgcttaaacttgcttgcttt 3358584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3368302 - 3368250
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3368302 tacgagaacctcctgattttatttaactttttgtgcttaaacttgcttgcttt 3368250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5063607 - 5063555
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5063607 tacgagaatctcttgattttatttaactttttgtgcttaaacttgcttgcttt 5063555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 10219612 - 10219657
Alignment:
Q  8 acctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10219612 acctcttgattttatttaactttttgtgcttaaacttgcttgcttt 10219657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 49891838 - 49891778
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaaga 61  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |||| |||||||    
T  49891838 tacgagaacctcttgattttatttaactttttgtgctataacttgctttcttttaaaaaga 49891778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 33613781 - 33613826
Alignment:
Q  4 gagaacctcttgattttatttaactttttgtgcttaaacttgcttg 49  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  33613781 gagaacctcttgattttattcaactttttgtgcttaaacttgcttg 33613826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22140057 - 22140109
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  22140057 tacgagaacctcttgattttatttaacttcttgtgctataacttgcttgcttt 22140109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22151971 - 22152023
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  22151971 tacgagaacctcttgattttatttaacttcttgtgctataacttgcttgcttt 22152023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47877765 - 47877714
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  47877765 tacgagaacctcttgattttattcaac-ttttgtgcttaaacttgcttgcttt 47877714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 739814 - 739781
Alignment:
Q  5 agaacctcttgattttatttaactttttgtgctt 38  Q
    ||||||||||||||||||||||||||||||||||    
T  739814 agaacctcttgattttatttaactttttgtgctt 739781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 745973 - 746006
Alignment:
Q  5 agaacctcttgattttatttaactttttgtgctt 38  Q
    ||||||||||||||||||||||||||||||||||    
T  745973 agaacctcttgattttatttaactttttgtgctt 746006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 11599740 - 11599770
Alignment:
Q  1 tacgagaacctcttgattttatttaactttt 31  Q
    |||||||||||||||||||||||||||||||    
T  11599740 tacgagaacctcttgattttatttaactttt 11599770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20840861 - 20840913
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||| ||||||||||||||||||||| ||  ||||||  ||||||||||||||    
T  20840861 tacgggaacctcttgattttatttaatttaatgtgctacaacttgcttgcttt 20840913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30250619 - 30250558
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaa 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  30250619 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttctaaaagaa 30250558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21746581 - 21746633
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21746581 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 21746633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24060544 - 24060596
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24060544 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 24060596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34461471 - 34461419
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34461471 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 34461419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34475728 - 34475676
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34475728 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 34475676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37578047 - 37577995
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37578047 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 37577995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37587157 - 37587105
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37587157 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 37587105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36433936 - 36433884
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  36433936 tacgagaacctcttgattttatttaacttttggtgctacaacttgcttgcttt 36433884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21829344 - 21829400
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaa 57  Q
    |||| ||||||||||||||||||||| ||  ||||||  ||||||||||||| ||||    
T  21829344 tacgggaacctcttgattttatttaagttaatgtgctataacttgcttgcttgaaaa 21829400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 26546575 - 26546631
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaa 57  Q
    |||| ||||||||||||||||||||| ||  ||||||  ||||||||||||| ||||    
T  26546575 tacgggaacctcttgattttatttaagttaatgtgctataacttgcttgcttgaaaa 26546631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38226620 - 38226671
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||| | |||| |||||  ||||||||||||||    
T  38226620 tacgagaacctcttgattttattt-atttttcgtgctataacttgcttgcttt 38226671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0799 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0799
Description:

Target: scaffold0799; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4564 - 4512
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4564 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 4512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2434 - 2382
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2434 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 2382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 17234 - 17182
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17234 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 17182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10312 - 10260
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10312 tacgagtacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 10260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 56830 - 56882
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56830 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 56882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 56569 - 56621
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56569 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 56621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 170218 - 170270
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  170218 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 170270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 186722 - 186774
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  186722 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 186774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6665139 - 6665087
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6665139 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 6665087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6672803 - 6672751
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6672803 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 6672751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25373145 - 25373093
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25373145 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 25373093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25706822 - 25706770
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25706822 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 25706770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12846649 - 12846601
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttg 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12846649 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttg 12846601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 25402309 - 25402261
Alignment:
Q  5 agaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25402309 agaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 25402261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 16738710 - 16738658
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  16738710 tacgagaacctcttgattttatttaactttttgtgctataacttgcttgcttt 16738658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20026255 - 20026307
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||||    
T  20026255 tacgagaacctcttgattttatttaacttttggtgctataacttgcttgcttt 20026307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 25644828 - 25644776
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  25644828 tacgagaacctcttgattttatttaacttcttgtgctataacttgcttgcttt 25644776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 22105824 - 22105867
Alignment:
Q  10 ctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  22105824 ctcttgattttatttaactttttgtgcttaaacttacttgcttt 22105867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23640425 - 23640477
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgcttt 53  Q
    |||| ||||||||| ||||||||||| |||||||||| ||||||||||||||||    
T  23640425 tacgggaacctcttaattttatttaa-tttttgtgctataaacttgcttgcttt 23640477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13387300 - 13387253
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttg 49  Q
    ||||||||||| |||||||||||| | ||||||||||| ||||||||||    
T  13387300 tacgagaaccttttgattttattt-attttttgtgctttaacttgcttg 13387253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 27806577 - 27806633
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaa 57  Q
    |||| ||||||||||||||||||||| ||  ||||||  ||||||||||||| ||||    
T  27806577 tacgggaacctcttgattttatttaagttaatgtgctataacttgcttgcttgaaaa 27806633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20073380 - 20073432
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20073380 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 20073432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27643808 - 27643756
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27643808 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 27643756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 1628224 - 1628172
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1628224 tacgagaacctcttgattttatttaactttttgtgcttaaatttgcttgcttt 1628172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 22402977 - 22402925
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22402977 tacgagaacctcttgattttatttaacttattgtgcttaaacttgcttgcttt 22402925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35025826 - 35025778
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttg 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35025826 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttg 35025778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18869578 - 18869526
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  18869578 tacgagaacctcttgattttatttaactttttgtgcttcaacttacttgcttt 18869526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22597847 - 22597907
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaaga 61  Q
    |||||||||||||||||||||||||||||||||||||  |||||| ||||||| |||||||    
T  22597847 tacgagaacctcttgattttatttaactttttgtgctataacttgtttgcttttaaaaaga 22597907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34270894 - 34270842
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  34270894 tacgagaacctcttgattttatttaactttttgtgctataacttgcttgcttt 34270842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 2890542 - 2890493
Alignment:
Q  4 gagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  2890542 gagaaccttttgattttatttaactttttgtgcttaaacttgtttgcttt 2890493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26844642 - 26844693
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  26844642 tacgagaacctcttgattttatttaac-ttttgtgctcaaacttgcttgcttt 26844693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19715063 - 19714995
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaattagagtg 71  Q
    |||||||||||||||||||||||||| ||  ||||||  ||||||||||| ||||||||||||||||||||    
T  19715063 tacgagaacctcttgattttatttaa-ttaatgtgctataacttgcttgc-ttaaaaaagaaattagagtg 19714995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 28701555 - 28701623
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaattagagtg 71  Q
    |||||||||||||||||||||||||| ||  ||||||  ||||||||||| ||||||||||||||||||||    
T  28701555 tacgagaacctcttgattttatttaa-ttaatgtgctataacttgcttgc-ttaaaaaagaaattagagtg 28701623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 2408655 - 2408704
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgc 50  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  2408655 tacgagaacctcttgattttatttaactttttgcgctataacttgcttgc 2408704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33253724 - 33253672
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||| |||||||| ||||||  ||||||||||||||    
T  33253724 tacgagaacctcttgattttacttaactttgtgtgctataacttgcttgcttt 33253672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12393628 - 12393576
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||  |||||| ||  ||||||||||||||    
T  12393628 tacgagaacctcttgattttatttaaacttttgtcctataacttgcttgcttt 12393576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9129964 - 9130022
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgctttaaaaaa 59  Q
    |||| |||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||    
T  9129964 tacgggaacctcttggttttattta-ctttttgtgctataaacttgcttgcttttaaaaa 9130022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9143800 - 9143858
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgctttaaaaaa 59  Q
    |||| |||||||||| ||||||||| ||||||||||| |||||||||||||||| |||||    
T  9143800 tacgggaacctcttggttttattta-ctttttgtgctataaacttgcttgcttttaaaaa 9143858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19721256 - 19721188
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaattagagtg 71  Q
    ||||||||||| |||||||||||||| ||   |||||  ||||||||||| ||||||||||||||||||||    
T  19721256 tacgagaaccttttgattttatttaa-ttaacgtgctataacttgcttgc-ttaaaaaagaaattagagtg 19721188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 18386909 - 18386986
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgctttaaaaaagaaattagagtggtgattaaa 80  Q
    |||| ||||||||||||||||||||| ||  |||||| |||||||||||||||  | |||||||||| |||| ||||||||    
T  18386909 tacgggaacctcttgattttatttaa-ttaatgtgctataaacttgcttgctt--ataaagaaattaaagtgatgattaaa 18386986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18910494 - 18910442
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgcttt 53  Q
    |||| |||||||||||||| |||| |||||||||||| ||||||||||||||||    
T  18910494 tacgggaacctcttgatttcattt-actttttgtgctataaacttgcttgcttt 18910442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12664053 - 12664002
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||| | |||| |||||  ||||||||||||||    
T  12664053 tacgagaacctcttgattttattt-atttttcgtgctataacttgcttgcttt 12664002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29600120 - 29600167
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttg 49  Q
    |||||||||||||||||||||||| | |||| |||||| ||||||||||    
T  29600120 tacgagaacctcttgattttattt-atttttcgtgctttaacttgcttg 29600167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35082297 - 35082349
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35082297 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 35082349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28459628 - 28459680
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  28459628 tacgataacctcttgattttatttaactttttgtgcttaaacttacttgcttt 28459680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21767892 - 21767945
Alignment:
Q  1 tacgagaacctcttgatttt-atttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  21767892 tacgagaacctcttgatttttattcaactttttgtgcttaaacttgcttgcttt 21767945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21749164 - 21749217
Alignment:
Q  1 tacgagaacctcttgatttt-atttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  21749164 tacgagaacctcttgatttttattcaactttttgtgcttaaatttgcttgcttt 21749217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 21753741 - 21753794
Alignment:
Q  1 tacgagaacctcttgatttt-atttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  21753741 tacgagaacctcttgatttttattcaactttttgtgcttaaatttgcttgcttt 21753794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24868282 - 24868334
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||| ||||||||||||||||||||||||| |||||  ||||||||||||||    
T  24868282 tacgaaaacctcttgattttatttaacttttggtgctataacttgcttgcttt 24868334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 18971885 - 18971963
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgctttaaaaaagaaattagagtggtgattaaa 80  Q
    ||||||||||||||| |||||||||| ||  |||||| ||||||||||||| |||||||| |||||| |||| ||||||||    
T  18971885 tacgagaacctcttggttttatttaa-ttaatgtgctataaacttgcttgc-ttaaaaaataaattaaagtgatgattaaa 18971963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 13037636 - 13037692
Alignment:
Q  6 gaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaa 62  Q
    ||||||||||||||||||||| ||  ||||||  ||||||||||||||  |||||||    
T  13037636 gaacctcttgattttatttaatttaatgtgctataacttgcttgcttttgaaaagaa 13037692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18501621 - 18501570
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||| ||  ||||||  ||||||||||||||    
T  18501621 tacgagaacctcttgattttatttaa-ttaatgtgctataacttgcttgcttt 18501570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27342116 - 27342163
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttg 49  Q
    |||||||||||||||||||||||| | |||| |||||| ||||||||||    
T  27342116 tacgagaacctcttgattttattt-atttttcgtgctttaacttgcttg 27342163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 27343226 - 27343273
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttg 49  Q
    |||||||||||||||||||||||| | |||| |||||| ||||||||||    
T  27343226 tacgagaacctcttgattttattt-atttttcgtgctttaacttgcttg 27343273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40385749 - 40385800
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||| ||||||||||||||||| ||| |||||||||  ||||||||||||||    
T  40385749 tacgaaaacctcttgattttattcaac-ttttgtgctataacttgcttgcttt 40385800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40389339 - 40389390
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||| || ||| |||||||||  ||||||||||||||    
T  40389339 tacgagaacctcttgattttgttcaac-ttttgtgctataacttgcttgcttt 40389390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18702888 - 18702940
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18702888 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 18702940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27171212 - 27171160
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27171212 tacgagtacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 27171160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 49934482 - 49934430
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49934482 tacgagaacctcttaattttatttaactttttgtgcttaaacttgcttgcttt 49934430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2686878 - 2686825
Alignment:
Q  1 tacgagaacctcttgatttt-atttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2686878 tacgagaacctcttgatttttatttaactttttgtgcttaaacttgcttgcttt 2686825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20312105 - 20312157
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  20312105 tacgagaacctcttgattttatttaacttcttgtgctataacttgcttgcttt 20312157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 44831218 - 44831299
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgcttt--aaaaaagaaattagagtggtgattaaa 80  Q
    |||||||||||||||||||||||||| ||  |||||| ||||||||||||||||  ||||||||| |||  ||| ||||||||    
T  44831218 tacgagaacctcttgattttatttaa-ttaatgtgctataaacttgcttgcttttcaaaaaagaagttaatgtgatgattaaa 44831299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18099706 - 18099654
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||| ||  |||||| ||||||||||||||||    
T  18099706 tacgagaacctcttgattttatttaa-ttaatgtgctataaacttgcttgcttt 18099654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 20640368 - 20640429
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaa 62  Q
    |||| ||||||||||||||||||||| ||  ||||||  ||||||||||||||  |||||||    
T  20640368 tacgggaacctcttgattttatttaatttaatgtgctataacttgcttgcttttgaaaagaa 20640429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 14134 - 14183
Alignment:
Q  4 gagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14134 gagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 14183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 17468 - 17517
Alignment:
Q  4 gagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17468 gagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 17517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 6001 - 6053
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6001 tacgagaacctcttgattttatttaactttttgtgcataaacttgcttgcttt 6053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28913 - 28861
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  28913 tacgagaacctcttgattttatttaactttttgtgctataacttgcttgcttt 28861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0560 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0560
Description:

Target: scaffold0560; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10730 - 10683
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgctt 48  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||    
T  10730 tacgagaacctcttgattttatttaactttttgtgctataacttgctt 10683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 12213 - 12260
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgctt 48  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||    
T  12213 tacgagaacctcttgattttatttaactttttgtgctataacttgctt 12260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 20469 - 20500
Alignment:
Q  1 tacgagaacctcttgattttatttaacttttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  20469 tacgagaacctcttgattttatttaacttttt 20500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 299212 - 299161
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  299212 tacgagaacctcttgtttttattcaactttt-gtgcttaaacttgcttgcttt 299161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0422 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4566 - 4645
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaagaaattagagtggtgattaaa 80  Q
    |||| ||||||||||||||||||||| |  |||||||  ||||||||||||  ||||  ||||||| |||| ||||||||    
T  4566 tacgggaacctcttgattttatttaattaattgtgctataacttgcttgctaaaaaagggaaattaaagtgatgattaaa 4645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 15671 - 15609
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgctttaaaaaagaa 62  Q
    |||| |||||| |||||||||||||| |||||||||| |||| |||||||||||  |||||||    
T  15671 tacgggaaccttttgattttatttaattttttgtgctataaatttgcttgcttttgaaaagaa 15609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2175 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold2175
Description:

Target: scaffold2175; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 588 - 511
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgctttaaaaaagaaattagagtggtgattaaa 80  Q
    |||| ||||||||||||||||||||| ||  |||||| |||| ||||||||||  |||||||||||| |||| ||||||||    
T  588 tacgggaacctcttgattttatttaa-ttaatgtgctataaatttgcttgctt--aaaaagaaattaaagtgatgattaaa 511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3392 - 3436
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgc 46  Q
    ||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  3392 tacgagaacctcttgattttattcaac-ttttgtgcttaaatttgc 3436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 91706 - 91629
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgctttaaaaaagaaattagagtggtgattaaa 80  Q
    |||| ||||||||||||||||||||| ||  |||||| |||||||||||||  |||||| ||||||| |||| ||||||||    
T  91706 tacgggaacctcttgattttatttaa-ttaatgtgctataaacttgcttgc--taaaaaggaaattaaagtgatgattaaa 91629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31976 - 32027
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||| | |||| |||||  ||||||||||||||    
T  31976 tacgagaacctcttgattttattt-atttttcgtgctataacttgcttgcttt 32027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1699 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1699
Description:

Target: scaffold1699; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 35 - 86
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||||||||||||||||||||||| | |||| |||||  ||||||||||||||    
T  35 tacgagaacctcttgattttattt-atttttcgtgctataacttgcttgcttt 86  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22906 - 22855
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgct-taaacttgcttgctt 52  Q
    |||| ||||||||||||||||||||| |||||||||| ||| |||||||||||    
T  22906 tacgggaacctcttgattttatttaa-tttttgtgctataatcttgcttgctt 22855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1054 - 1106
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgcttt 53  Q
    |||| ||||||||||||||||||||| ||  ||||||  ||||||||||||||    
T  1054 tacgggaacctcttgattttatttaatttaatgtgctagaacttgcttgcttt 1106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 360890 - 360969
Alignment:
Q  1 tacgagaacctcttgattttatttaactttttgtgcttaaacttgcttgctttaaaaaa---gaaattagagtggtgattaa 79  Q
    ||||||||||||||| |||||||||| ||  ||||||  |||||||||||  |||||||   |||||||||||| |||||||    
T  360890 tacgagaacctcttggttttatttaatttaatgtgctataacttgcttgc--taaaaaaggggaaattagagtgatgattaa 360969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2127 times since January 2019
Visitors: 8677