View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4545_low_2 (Length: 387)
Name: NF4545_low_2
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4545_low_2 |
| |
|
[»] scaffold0134 (2 HSPs) |
| | |
|
[»] scaffold0054 (2 HSPs) |
| | |
|
[»] scaffold0613 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 37897563 - 37897916
Alignment:
Q |
17 |
gatatcatatcttcagattggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgaca |
116 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
37897563 |
gatatcatatcttcagattggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgaca |
37897662 |
T |
|
Q |
117 |
tgccgtcttctttggactatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatg |
216 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
37897663 |
tgccgtcttctttggactatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatg |
37897762 |
T |
|
Q |
217 |
gaccatgtctggtgtcattttacttgagcaatgatgtgttctttgagatgattgttttgatgagtgtgtcattggttgtaacagtcataccctcagactt |
316 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
T |
37897763 |
gaccatgtctggtgtcattttacttgagcaatgatgtgttctttgagatgattgttttgatgagtgtgtcattggttgtaacaatcataccctcagactt |
37897862 |
T |
|
Q |
317 |
ggatgattgttttgatgttaaagcattgtggataaacttggcggtgttagatga |
370 |
Q |
|
|
||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
T |
37897863 |
ggacgattgttttgatgttaaagctttgtggataaacttggcggtgttatatga |
37897916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 37895664 - 37895793
Alignment:
Q |
60 |
ccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtct |
159 |
Q |
|
|
||||||||||||| |||| |||||||||||| |||||||| || |||||||||||||||| | ||||||||| | | ||||| ||||||||||| |
|
|
T |
37895664 |
ccttatgggaggtttatagcctaagaagtaattcgtggaggaaacttgatgttgacatgccttattctttggaatgtaaggaggg----cacccaagtct |
37895759 |
T |
|
Q |
160 |
acttggatggagtgtgtcattggttgtgtaaaga |
193 |
Q |
|
|
| |||||| ||||||||||||||||||| |||| |
|
|
T |
37895760 |
atatggatgaagtgtgtcattggttgtgtgaaga |
37895793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 9568982 - 9569076
Alignment:
Q |
153 |
caagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatga |
250 |
Q |
|
|
||||||||| || |||| |||||||||||||||||| ||||||| ||||||||| | |||||||||||| |||| |||||||||||||||||||| |
|
|
T |
9568982 |
caagtctacatgaatggtgtgtgtcattggttgtgtgaagaaga---agaagatagtcaggatggaccatgtttggtatcattttacttgagcaatga |
9569076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 9569099 - 9569158
Alignment:
Q |
306 |
ccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtta |
365 |
Q |
|
|
|||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |
|
|
T |
9569099 |
ccctcatacttggatgattgtttcgatgttcaagcattgtggataaacttggtggtgtta |
9569158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 361
Target Start/End: Complemental strand, 54295255 - 54295196
Alignment:
Q |
302 |
cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggt |
361 |
Q |
|
|
|||| ||||| |||| |||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
T |
54295255 |
catatcctcaaacttagatgattgttttgatgttcaagcattgtggataaccttggcggt |
54295196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 259
Target Start/End: Complemental strand, 9602866 - 9602763
Alignment:
Q |
153 |
caagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatg |
252 |
Q |
|
|
||||||||| ||||||| ||||||||||||||||| ||||||||||||| ||| | |||||| ||| |||| |||||||||||||||||||| | |
|
|
T |
9602866 |
caagtctacatggatggtgtgtgtcattggttgtgggaagaagatgaaga---tagtcaagatggaagatggttggtatcattttacttgagcaatgagg |
9602770 |
T |
|
Q |
253 |
tgttctt |
259 |
Q |
|
|
| ||||| |
|
|
T |
9602769 |
tattctt |
9602763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 9593946 - 9593887
Alignment:
Q |
306 |
ccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtta |
365 |
Q |
|
|
|||||| |||||||||||||||| ||| || | ||||||||||||||||||| ||||||| |
|
|
T |
9593946 |
ccctcatacttggatgattgtttcgatcttcacgcattgtggataaacttggtggtgtta |
9593887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 250
Target Start/End: Complemental strand, 54295367 - 54295274
Alignment:
Q |
154 |
aagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctg-atggaccatgtctggtgtcattttacttgagcaatga |
250 |
Q |
|
|
|||||||| ||||||| |||||||||||||||||| ||| ||||||| || ||| ||||||||||| |||| |||||||||||||||||||| |
|
|
T |
54295367 |
aagtctacatggatggtgtgtgtcattggttgtgtgaagtgcatgaagataat----ctgcatggaccatgtttggtatcattttacttgagcaatga |
54295274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 9574226 - 9574276
Alignment:
Q |
302 |
cataccctcagacttggatgattgttttgatgttaaagcattgtggataaa |
352 |
Q |
|
|
|||||||||| |||| |||||| |||| |||||| |||||||||||||||| |
|
|
T |
9574226 |
cataccctcatacttagatgatagtttcgatgttcaagcattgtggataaa |
9574276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 21)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 29144967 - 29145189
Alignment:
Q |
33 |
attggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga |
132 |
Q |
|
|
|||||| |||||| || || |||| || ||||||||| |||||| ||||||||||||| |||||| || |||||||| |||||| ||||||| | |
|
|
T |
29144967 |
attggtcgggagaaatatcattaggacctttatgggagatatatagtctaagaagtaacttgtggaggaaacttgatgttagcatgccatcttcttcaca |
29145066 |
T |
|
Q |
133 |
ctatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtc |
232 |
Q |
|
|
|||| ||||||| |||||||| ||| ||| |||||||||||||||||||| | || ||||||||||||| | ||||||||||||||| ||||||| |
|
|
T |
29145067 |
ctatactgaggg----aacccaagtatacctgggtggagtgtgtcattggttgtctgaaaaagatgaagaagaaaatcctgatggaccatgtttggtgtc |
29145162 |
T |
|
Q |
233 |
attttacttgagcaatgatgtgttctt |
259 |
Q |
|
|
|||||||||||| | ||| |||||||| |
|
|
T |
29145163 |
attttacttgagtagtgaggtgttctt |
29145189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 29299861 - 29299969
Alignment:
Q |
149 |
cacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaat |
248 |
Q |
|
|
||||||||||||| ||||||||||||| |||||||||||| || |||||||| || ||||||| | |||||||||| ||||||||||||||||||||||| |
|
|
T |
29299861 |
cacccaagtctacatggatggagtgtgccattggttgtgtgaaaaagatgaaaaacatagccccgctggaccatgtttggtgtcattttacttgagcaat |
29299960 |
T |
|
Q |
249 |
gatgtgttc |
257 |
Q |
|
|
|| |||||| |
|
|
T |
29299961 |
gaggtgttc |
29299969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 197
Target Start/End: Original strand, 29012537 - 29012672
Alignment:
Q |
58 |
gcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagt |
157 |
Q |
|
|
||||||||||||| |||||| ||||||||||||| |||||||||| || ||||||||||||||| ||||||||||| | ||| || ||||||||| |
|
|
T |
29012537 |
gcccttatgggagatatatagcctaagaagtaacatgtggagagaactttatgttgacatgccgtattctttggactgtattgacgg----cacccaagt |
29012632 |
T |
|
Q |
158 |
ctacttggatggagtgtgtcattggttgtgtaaagaagat |
197 |
Q |
|
|
|||| |||||||||||||||||||||||| | |||||||| |
|
|
T |
29012633 |
ctacatggatggagtgtgtcattggttgtctgaagaagat |
29012672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 255
Target Start/End: Original strand, 34281623 - 34281807
Alignment:
Q |
64 |
atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtctactt |
163 |
Q |
|
|
||||||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||| | |||| || ||||||| ||||| | |
|
|
T |
34281623 |
atgggagatatatagcctaaggagtaactcgtggagagaacttgatgttgacatgccgtcttctgtggactgtactgaagg----cacccaaatctacat |
34281718 |
T |
|
Q |
164 |
ggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgt |
255 |
Q |
|
|
||| || |||||||||||||||||| || || || |||||| || |||||||||| |||| |||||||||||||||||||| |||| |
|
|
T |
34281719 |
ggacggtgtgtgtcattggttgtgtgaaaaacat---aaagataatcccattggaccatgtttggtatcattttacttgagcaatgaagtgt |
34281807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 32745256 - 32745131
Alignment:
Q |
59 |
cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc |
158 |
Q |
|
|
|||||||||||| |||||| ||||||||||||||| ||||| || ||||||||||||||||| ||||||||||| | ||||| || ||| ||| |
|
|
T |
32745256 |
cccttatgggagatatatagcctaagaagtaactcctggaggaaacttgatgttgacatgccgccttctttggacaccacggaggg----caaccatgtc |
32745161 |
T |
|
Q |
159 |
tacttggatggagtgtgtcattggttgtgt |
188 |
Q |
|
|
||| |||||||||||||||||||||||||| |
|
|
T |
32745160 |
tacatggatggagtgtgtcattggttgtgt |
32745131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 23218865 - 23218780
Alignment:
Q |
174 |
tgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttctt |
259 |
Q |
|
|
||||||||||||||| || |||| || ||||||| ||| | |||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
T |
23218865 |
tgtcattggttgtgtgaaaaagacgaggaagataaccccgttggaccatgtttggtgtcattttacttgagcaatgaggtgttctt |
23218780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 25319666 - 25319548
Alignment:
Q |
65 |
tgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga-ctatgctgagggcacccacccaagtctactt |
163 |
Q |
|
|
|||||| |||||| ||||||||||||||| |||||| || ||||| |||| ||||||||||||| ||| | | ||||||| ||||| ||||||| | |
|
|
T |
25319666 |
tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttcttgggagttgtactgaggg----cacccgagtctacat |
25319571 |
T |
|
Q |
164 |
ggatggagtgtgtcattggttgt |
186 |
Q |
|
|
||||||||||||||||||||||| |
|
|
T |
25319570 |
ggatggagtgtgtcattggttgt |
25319548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 26149359 - 26149241
Alignment:
Q |
65 |
tgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga-ctatgctgagggcacccacccaagtctactt |
163 |
Q |
|
|
|||||| |||||| ||||||||||||||| |||||| || ||||| |||| ||||||||||||| ||| | | ||||||| ||||| ||||||| | |
|
|
T |
26149359 |
tgggagatatatagcctaagaagtaactcatggagaaaacttgatattgagatgccgtcttcttgggagttgtactgaggg----cacccgagtctacat |
26149264 |
T |
|
Q |
164 |
ggatggagtgtgtcattggttgt |
186 |
Q |
|
|
||||||||||||||||||||||| |
|
|
T |
26149263 |
ggatggagtgtgtcattggttgt |
26149241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 29123805 - 29123928
Alignment:
Q |
59 |
cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc |
158 |
Q |
|
|
|||||||||||| ||||| ||||||||||||||| ||||| | ||||||||||||||||| ||||||||||| | | ||||| || ||| ||| |
|
|
T |
29123805 |
cccttatgggag--atatagcctaagaagtaactcttggaggatacttgatgttgacatgccgccttctttggacactacagaggg----caaccatgtc |
29123898 |
T |
|
Q |
159 |
tacttggatggagtgtgtcattggttgtgt |
188 |
Q |
|
|
||| |||||||||||||||||||||||||| |
|
|
T |
29123899 |
tacatggatggagtgtgtcattggttgtgt |
29123928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 257
Target Start/End: Original strand, 29131002 - 29131199
Alignment:
Q |
50 |
tctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcaccc |
149 |
Q |
|
|
||||||||||||| ||||| |||||| | || ||||||||| ||||||||| |||||||||||||||| | ||| || |||| | || || |||| |
|
|
T |
29131002 |
tctttagcgccct---gggagatatatagctcaaaaagtaactcatggagagaacttgatgttgacatgccttattcgttagactgtaatgcaggaaccc |
29131098 |
T |
|
Q |
150 |
acccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatg |
249 |
Q |
|
|
| |||||| ||||||| |||||||||||||||||| || || |||||||| || || |||||||||| |||| ||||||||||||||||||| |
|
|
T |
29131099 |
a----agtctatatggatggtgtgtgtcattggttgtgtgaaaaacatgaagaaaat---cccattggaccatgtttggtatcattttacttgagcaatg |
29131191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 29152456 - 29152394
Alignment:
Q |
72 |
tatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggact |
134 |
Q |
|
|
|||||| |||||| ||| |||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
T |
29152456 |
tatatagcctaaggagtgactcgtggagagaacttgatgttgacatgccgtcttctgtggact |
29152394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 32961123 - 32960996
Alignment:
Q |
59 |
cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc |
158 |
Q |
|
|
|||||||||||| |||||| | ||||||||||||||||||| || |||||||||||||||| ||||||| | | | ||||||||||| | || |
|
|
T |
32961123 |
cccttatgggagatatatagcgtaagaagtaactcgtggaggaaacttgatgttgacatgccaccttctttaaaatggtccgagggcacccatc----tc |
32961028 |
T |
|
Q |
159 |
tacttggatggagtgtgtcattggttgtgtaa |
190 |
Q |
|
|
||| ||||||| |||||||||||||||||||| |
|
|
T |
32961027 |
tacatggatggtgtgtgtcattggttgtgtaa |
32960996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 365
Target Start/End: Complemental strand, 34258428 - 34258366
Alignment:
Q |
303 |
ataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtta |
365 |
Q |
|
|
||||||||| || | |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
T |
34258428 |
ataccctcatacgttgatgattgttttgatgttaaagcaaagtggataaacttggcggtgtta |
34258366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 29145199 - 29145268
Alignment:
Q |
302 |
cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgttagatgat |
371 |
Q |
|
|
||||||||||||||| ||||||||||| |||||| ||||||||||||||||| |||| ||| || ||||| |
|
|
T |
29145199 |
cataccctcagacttagatgattgtttcgatgttgaagcattgtggataaacctggcagtgataaatgat |
29145268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 29136958 - 29137083
Alignment:
Q |
59 |
cccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtc |
158 |
Q |
|
|
|||||||||||| ||||| ||||||||||||||| | ||| || |||| |||||||||||| |||||||||| | | || || |||||| ||| |
|
|
T |
29136958 |
cccttatgggagatatatgacctaagaagtaactcctcgaggaaacttgaggttgacatgccgccttctttggatattacggaagg----cacccatgtc |
29137053 |
T |
|
Q |
159 |
tacttggatggagtgtgtcattggttgtgt |
188 |
Q |
|
|
||| |||||||||||||||||||||||||| |
|
|
T |
29137054 |
tacatggatggagtgtgtcattggttgtgt |
29137083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 34281815 - 34281884
Alignment:
Q |
296 |
aacagtcataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtta |
365 |
Q |
|
|
||||| ||||||| ||||| | |||||||||||||||||||||||| ||||| |||||||| ||||||| |
|
|
T |
34281815 |
aacagccatacccccagacgtagatgattgttttgatgttaaagcaaagtggaaaaacttggtggtgtta |
34281884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 26090947 - 26090892
Alignment:
Q |
205 |
atagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttcttt |
260 |
Q |
|
|
||||||||| | ||||||||||||| |||||| ||||||||||||| ||||||||| |
|
|
T |
26090947 |
atagccctggtagaccatgtctggtatcatttaacttgagcaatgaggtgttcttt |
26090892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 29149091 - 29149028
Alignment:
Q |
64 |
atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttct |
127 |
Q |
|
|
||||||| | |||| ||||| ||||||||| ||||||||| || |||||||||||||||||||| |
|
|
T |
29149091 |
atgggagatgtatagcctaaaaagtaactcatggagagaaatttatgttgacatgccgtcttct |
29149028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 29131211 - 29131273
Alignment:
Q |
302 |
cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggcggtgtt |
364 |
Q |
|
|
||||||||||||| | |||||||||||||||||||||| | |||||||||||||| ||||| |
|
|
T |
29131211 |
cataccctcagacgtagatgattgttttgatgttaaagaaaattggataaacttggcagtgtt |
29131273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 29152358 - 29152318
Alignment:
Q |
215 |
tggaccatgtctggtgtcattttacttgagcaatgatgtgt |
255 |
Q |
|
|
|||||||||| |||| |||||||||||||||||||| |||| |
|
|
T |
29152358 |
tggaccatgtttggtatcattttacttgagcaatgaagtgt |
29152318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 34278841 - 34278773
Alignment:
Q |
64 |
atgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttgga |
132 |
Q |
|
|
||||||| |||||| ||| | |||||| |||||||||||| |||||| || |||||||| |||| |||| |
|
|
T |
34278841 |
atgggagatatatagcctgataagtaattcgtggagagaacttgatgctgtcatgccgtattctatgga |
34278773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 16642 - 16410
Alignment:
Q |
23 |
atatcttcagattggttgggagacatctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgt |
122 |
Q |
|
|
|||| |||| ||| ||||||| | || ||||||| || ||||||||| |||||| ||||| ||||||||||||||| || |||| ||||||||||| | |
|
|
T |
16642 |
atatattcaaattcgttgggaaaaatatctttagaacctttatgggagatatatagcctaacaagtaactcgtggaggaaacttgacgttgacatgccat |
16543 |
T |
|
Q |
123 |
cttctttggactatgctgagggcacccacccaagtctacttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccat |
222 |
Q |
|
|
||||| | | | |||||||||||| ||||||| | |||| | | ||||||||||||||| || |||| || ||||||| ||| | |||| ||| |
|
|
T |
16542 |
tttcttcaaaatgtaatgagggcaccca----agtctacatagatgaaatctgtcattggttgtgtgaaaaagacgaggaagataaccccgctggagcat |
16447 |
T |
|
Q |
223 |
gtctggtgtcattttacttgagcaatgatgtgttctt |
259 |
Q |
|
|
|| ||||||||||||||||||||||||| |||||||| |
|
|
T |
16446 |
gtttggtgtcattttacttgagcaatgaggtgttctt |
16410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 358
Target Start/End: Complemental strand, 16400 - 16344
Alignment:
Q |
302 |
cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggc |
358 |
Q |
|
|
|||||||||| |||| |||||||||||||||||| |||||| |||||||||||||| |
|
|
T |
16400 |
cataccctcaaacttagatgattgttttgatgttgaagcatcatggataaacttggc |
16344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 42446008 - 42446150
Alignment:
Q |
47 |
atctctttagcgcccttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggca |
146 |
Q |
|
|
|||||||||| ||||||||||| |||||| |||||||||||| ||||||| || |||||||||||||||| | ||||||||| | | |||||| |
|
|
T |
42446008 |
atctctttagactccttatgggagatatatagtctaagaagtaacccgtggaggaaacttgatgttgacatgccttattctttggaatgtattgaggg-- |
42446105 |
T |
|
Q |
147 |
cccacccaagtctacttggatggagtgtgtcattggttgtgtaaaga |
193 |
Q |
|
|
||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
T |
42446106 |
--cacccaagtctacatggatggagtgtgtcattggttgtgtgaaga |
42446150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 42446187 - 42446231
Alignment:
Q |
215 |
tggaccatgtctggtgtcattttacttgagcaatgatgtgttctt |
259 |
Q |
|
|
|||||||||| |||| |||||| |||||||||||||||| ||||| |
|
|
T |
42446187 |
tggaccatgtttggtatcatttgacttgagcaatgatgtattctt |
42446231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 258
Target Start/End: Complemental strand, 40187 - 40004
Alignment:
Q |
62 |
ttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtctac |
161 |
Q |
|
|
||||||||| |||||| |||||||||||||||||||||| || ||||| |||||||||| ||||||| ||| | ||||| |||||||||||| |
|
|
T |
40187 |
ttatgggagatatatagcctaagaagtaactcgtggagaaaacttgatattgacatgccatcttcttcttactgtatagaggg----aacccaagtctac |
40092 |
T |
|
Q |
162 |
ttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttct |
258 |
Q |
|
|
||||||||||||||||||||||||| |||||| ||| ||||| |||||||||| | || |||||||||||||| ||||| ||||||| |
|
|
T |
40091 |
atggatggagtgtgtcattggttgtg---------tgaagagaatacccctgctggaccatgtttagtatcattttacttgagaaatgaggtgttct |
40004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 258
Target Start/End: Complemental strand, 33836 - 33653
Alignment:
Q |
62 |
ttatgggaggtatatatcctaagaagtaactcgtggagagaagttgatgttgacatgccgtcttctttggactatgctgagggcacccacccaagtctac |
161 |
Q |
|
|
||||||||| |||||| ||||||||||||||||||||| || ||||| |||||||||| ||||||| ||| | ||||| |||||||||||| |
|
|
T |
33836 |
ttatgggagatatatagcctaagaagtaactcgtggaggaaacttgatattgacatgccatcttcttcttactgtatagaggg----aacccaagtctac |
33741 |
T |
|
Q |
162 |
ttggatggagtgtgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttct |
258 |
Q |
|
|
||||||||||||||||||||||||| |||||| ||| ||||| |||||||||| | || |||||||||||||| ||||| ||||||| |
|
|
T |
33740 |
atggatggagtgtgtcattggttgtg---------tgaagagaatacccctgctggaccatgtttagtatcattttacttgagaaatgaggtgttct |
33653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0613 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0613
Description:
Target: scaffold0613; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 5 - 90
Alignment:
Q |
174 |
tgtcattggttgtgtaaagaagatgaagaagatagccctgatggaccatgtctggtgtcattttacttgagcaatgatgtgttctt |
259 |
Q |
|
|
||||||||||||||| || |||| || ||||||| ||| | || ||||||| ||||||||||||||||||||||||| |||||||| |
|
|
T |
5 |
tgtcattggttgtgtgaaaaagacgaggaagataaccccgctgaaccatgtttggtgtcattttacttgagcaatgaggtgttctt |
90 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0613; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 358
Target Start/End: Original strand, 100 - 156
Alignment:
Q |
302 |
cataccctcagacttggatgattgttttgatgttaaagcattgtggataaacttggc |
358 |
Q |
|
|
|||||||||| |||| |||||||||||||||||| |||||| |||||||||||||| |
|
|
T |
100 |
cataccctcaaacttagatgattgttttgatgttgaagcatcctggataaacttggc |
156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3684 times since January 2019
Visitors: 8709