View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4545_low_4 (Length: 327)

Name: NF4545_low_4
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4545_low_4
NF4545_low_4
[»] chr6 (6 HSPs)
chr6 (1-327)||(370580-370916)
chr6 (5-106)||(1453636-1453737)
chr6 (5-106)||(1465328-1465429)
chr6 (203-237)||(176354-176388)
chr6 (203-237)||(1442105-1442139)
chr6 (205-237)||(1470922-1470954)
[»] chr3 (5 HSPs)
chr3 (194-236)||(2442060-2442102)
chr3 (194-233)||(989420-989459)
chr3 (198-236)||(4142126-4142164)
chr3 (194-236)||(4157932-4157974)
chr3 (194-235)||(1931142-1931183)
[»] chr2 (3 HSPs)
chr2 (203-236)||(6538855-6538888)
chr2 (204-236)||(7160752-7160784)
chr2 (204-236)||(7168688-7168720)
[»] chr4 (2 HSPs)
chr4 (205-237)||(55419802-55419834)
chr4 (194-236)||(22672115-22672157)
[»] chr5 (2 HSPs)
chr5 (197-236)||(23766853-23766892)
chr5 (197-236)||(23816701-23816740)
[»] chr7 (1 HSPs)
chr7 (204-237)||(3927079-3927112)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 370580 - 370916
Alignment:
Q  1 gatatgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacat 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370580 gatatgagactctcaacgtagacattagagatgaatgaagttgaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacat 370679  T
Q  101 atacctgatcaaagaagtccaaaatcaattggtcatcctcttcaaaaatataaaattgattgatggaatcagcatgaccaaattccgtcgcgaaagaaat 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370680 atacctgatcaaagaagttcaaaatcaattggtcatcctcttcaaaaatataaaattgattgatggaatcagcatgaccaaattccgtcgcgaaagaaat 370779  T
Q  201 attgaacaatttagtccaagaatctttatttc----------cataacccaaatgcccgtaaaagttttagtctgagcaaggatgcattagcaatcccta 290  Q
    ||||||||||||||||||||||||||||||||          ||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||    
T  370780 attgaacaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatcccta 370879  T
Q  291 gaaacctacaagtggaattcaagcagaggttcatcta 327  Q
    ||||||| |||||||||||||||||||||||||||||    
T  370880 gaaacctccaagtggaattcaagcagaggttcatcta 370916  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 1453636 - 1453737
Alignment:
Q  5 tgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatatac 104  Q
    |||||||||||||||||||||||||||| ||     ||||| |||||| |||||| |||||| |||||   ||  |||||||||||||||||||||||||    
T  1453636 tgagactctcaacgtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatac 1453735  T
Q  105 ct 106  Q
    ||    
T  1453736 ct 1453737  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 1465328 - 1465429
Alignment:
Q  5 tgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatatac 104  Q
    |||||||||||||||||||||||||||| ||     ||||| |||||| |||||| |||||| |||||   ||  |||||||||||||||||||||||||    
T  1465328 tgagactctcaacgtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatac 1465427  T
Q  105 ct 106  Q
    ||    
T  1465428 ct 1465429  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 176388 - 176354
Alignment:
Q  203 tgaacaatttagtccaagaatctttatttccataa 237  Q
    |||||||||||||||||||||||||||||||||||    
T  176388 tgaacaatttagtccaagaatctttatttccataa 176354  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 1442105 - 1442139
Alignment:
Q  203 tgaacaatttagtccaagaatctttatttccataa 237  Q
    |||||||||||||||||||||||||| ||||||||    
T  1442105 tgaacaatttagtccaagaatctttaattccataa 1442139  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 1470922 - 1470954
Alignment:
Q  205 aacaatttagtccaagaatctttatttccataa 237  Q
    |||||||||| ||||||||||||||||||||||    
T  1470922 aacaatttagaccaagaatctttatttccataa 1470954  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 2442102 - 2442060
Alignment:
Q  194 aagaaatattgaacaatttagtccaagaatctttatttccata 236  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  2442102 aagaaagagtgaacaatttagtccaagaatctttatttccata 2442060  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 989459 - 989420
Alignment:
Q  194 aagaaatattgaacaatttagtccaagaatctttatttcc 233  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  989459 aagaaatagtgaacaatttagtccaagactctttatttcc 989420  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 4142126 - 4142164
Alignment:
Q  198 aatattgaacaatttagtccaagaatctttatttccata 236  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  4142126 aatagtgaacaatttagtccaagactctttatttccata 4142164  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 4157932 - 4157974
Alignment:
Q  194 aagaaatattgaacaatttagtccaagaatctttatttccata 236  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||    
T  4157932 aagagatagtgaacaatttagtccaagactctttatttccata 4157974  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 1931142 - 1931183
Alignment:
Q  194 aagaaatattgaacaatttagtccaagaatctttatttccat 235  Q
    |||||||| |||||||||||||||| || |||||||||||||    
T  1931142 aagaaatagtgaacaatttagtccaggagtctttatttccat 1931183  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 6538888 - 6538855
Alignment:
Q  203 tgaacaatttagtccaagaatctttatttccata 236  Q
    ||||||||||||||||||||||||||||||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccata 6538855  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 7160752 - 7160784
Alignment:
Q  204 gaacaatttagtccaagaatctttatttccata 236  Q
    ||||||||||||||||||||| |||||||||||    
T  7160752 gaacaatttagtccaagaatcattatttccata 7160784  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 7168688 - 7168720
Alignment:
Q  204 gaacaatttagtccaagaatctttatttccata 236  Q
    ||||||||||||||||||||| |||||||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccata 7168720  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 55419834 - 55419802
Alignment:
Q  205 aacaatttagtccaagaatctttatttccataa 237  Q
    |||||||||||||||||||||||||||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataa 55419802  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 22672115 - 22672157
Alignment:
Q  194 aagaaatattgaacaatttagtccaagaatctttatttccata 236  Q
    |||||||| ||||||||||||||||||| || |||||||||||    
T  22672115 aagaaatagtgaacaatttagtccaagattccttatttccata 22672157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 23766853 - 23766892
Alignment:
Q  197 aaatattgaacaatttagtccaagaatctttatttccata 236  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  23766853 aaatagtgaacaatttagtccaagactctttatttccata 23766892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 23816701 - 23816740
Alignment:
Q  197 aaatattgaacaatttagtccaagaatctttatttccata 236  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  23816701 aaatagtgaacaatttagtccaagactctttatttccata 23816740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 3927112 - 3927079
Alignment:
Q  204 gaacaatttagtccaagaatctttatttccataa 237  Q
    |||||||||||||||||||| |||||||||||||    
T  3927112 gaacaatttagtccaagaatttttatttccataa 3927079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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