View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4545_low_5 (Length: 326)
Name: NF4545_low_5
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4545_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 39264575 - 39264900
Alignment:
| Q |
1 |
ttctacaagaaagggaaattctcatgaaggaaacatcttgtggaagctaccgcgtatcatcttatgctattgcaaatggcttagtttacttgccatttct |
100 |
Q |
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| T |
39264575 |
ttctacaagaaagggaaattctcatgaaggaaacatcttgtggaagctaccgcgtatcatcttatgctattgcaaatggcttagtttacttgccatttct |
39264674 |
T |
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| Q |
101 |
tctaatcctagccattttgttcacagttcctttatactggcttgttggtctcaacacaaacttcactgcttttttgcactttctgttactgatatggctt |
200 |
Q |
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| T |
39264675 |
tctaatcctagccattttgttcacagttcctttatactggcttgttggtctcaacacaaacttcactgcttttttgcactttctgttactgatatggctt |
39264774 |
T |
|
| Q |
201 |
gttctttatacagccaattcagttgtggtttgtttcagtgctcttgtgcctaatttcattgttggaaattcagtgattaatggcgttataggctctttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39264775 |
gttctttatacagccaattcagttgtggtttgtttcagtgctcttgtgcctaatttcattgttggaaattcagtgattaatggcgttataggctctttct |
39264874 |
T |
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| Q |
301 |
tcttgttctctggttacttcatctca |
326 |
Q |
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| T |
39264875 |
tcttgttctctggttacttcatctca |
39264900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 44068293 - 44068563
Alignment:
| Q |
1 |
ttctacaagaaagggaaattctcatgaaggaaacatcttgtggaagctaccgcgtatcatcttatgctattgcaaatggcttagtttacttgccatttct |
100 |
Q |
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|||||||||||||||| ||||| |||||||| || || ||||||||||| | || ||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
44068293 |
ttctacaagaaagggagattctaatgaaggagacttcaagtggaagctacagagtttcatcttatgctattgccaatggcctagtttacttgccatttct |
44068392 |
T |
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| Q |
101 |
tctaatcctagccattttgttcacagttcctttatactggcttgttggtctcaacacaaacttcactgcttttttgcactttctgttactgatatggctt |
200 |
Q |
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|| || ||||||||||| ||| |||| || | |||||| || | ||||||||| ||| ||||| || |||||||||||| |||| || |||||||| |
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| T |
44068393 |
actcatactagccattttattcgcagtgccgctttactggattatcggtctcaaccaaaatttcacagcgtttttgcactttttgttgctaatatggctg |
44068492 |
T |
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| Q |
201 |
gttctttatacagccaattcagttgtggtttgtttcagtgctcttgtgcctaatttcattgttggaaattc |
271 |
Q |
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||| | ||||| || || || |||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
44068493 |
gttttgtataccgcaaactcggttgtggtctgtttcagtgctctggtgcctaatttcattgttggaaattc |
44068563 |
T |
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