View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4545_low_9 (Length: 266)
Name: NF4545_low_9
Description: NF4545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4545_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 370931 - 371179
Alignment:
| Q |
1 |
tgcgaaatctcttgataatactctttttctaaatcaagagaaagaatggcccatgaattgttgttctttttatctagtatgacccaattaatggttccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
370931 |
tgcgaaatctcttgataatactctttttctaaatcaagagaaagaatgacccatgaattgttgttctttttatctagtatgacccaattaatggttccac |
371030 |
T |
|
| Q |
101 |
ttacaaattttcctagagaaacttcgagttcacccatgagtagttgagaaggtaagcatggaatcgtactccaagagttggtacctaaagtaagaaccct |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
371031 |
ttacaaattttcctggagaaacttcgagttcacccatgagtagttgagaaggtaagcatggaatcgtactccaagagttggtacctaaagtaagaaccct |
371130 |
T |
|
| Q |
201 |
aacttcagtttcgcaagaattatcgatttgtttgaacgaaatggcaact |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
371131 |
aacttcagtttcgcaagaattatcgatttgtttgaacgaaatggcaact |
371179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 1459691 - 1459800
Alignment:
| Q |
5 |
aaatctcttgataatactctttttctaaatcaagagaaagaatggcccatgaattgttgttctttttatctagtatgacccaattaatggttccacttac |
104 |
Q |
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|||||||||||||| |||| ||| |||||||||||||||||||| ||| |||| || |||| | ||| |||||||||||||||||||| |||||||| |
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| T |
1459691 |
aaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagtcattctctcgatccagtatgacccaattaatggtgccacttac |
1459790 |
T |
|
| Q |
105 |
aaattttcct |
114 |
Q |
| |
|
|||||||||| |
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| T |
1459791 |
aaattttcct |
1459800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 1471073 - 1471178
Alignment:
| Q |
5 |
aaatctcttgataatactctttttctaaatcaagagaaagaatggcccatgaattgttgttctttttatctagtatgacccaattaatggttccacttac |
104 |
Q |
| |
|
|||||||||||||| |||| ||| |||||| ||||||||||||| ||| |||| || |||| || |||||||| ||||||||||||||| |||| ||| |
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| T |
1471073 |
aaatctcttgataagactcgtttcctaaattaagagaaagaatgacccgtgaagagtcattctcttgatctagtacgacccaattaatggtaccacatac |
1471172 |
T |
|
| Q |
105 |
aaattt |
110 |
Q |
| |
|
|||||| |
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|
| T |
1471173 |
aaattt |
1471178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 1442249 - 1442291
Alignment:
| Q |
5 |
aaatctcttgataatactctttttctaaatcaagagaaagaat |
47 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
1442249 |
aaatctcttgataagactctttttctaaatcaagagagagaat |
1442291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 7564901 - 7565006
Alignment:
| Q |
5 |
aaatctcttgataatactctttttctaaatcaagagaaagaatggcccatgaattgttgttctttttatctagtatgacccaattaatggttccacttac |
104 |
Q |
| |
|
|||||||||||||| |||| || |||||||||| ||||||||| |||||||| || || | || |||| ||||||||||| ||||| |||||||| |
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| T |
7564901 |
aaatctcttgataagactcgttacctaaatcaagggaaagaatgacccatgaagagtcattatcttgatcttttatgacccaatgaatggcgccacttac |
7565000 |
T |
|
| Q |
105 |
aaattt |
110 |
Q |
| |
|
|||||| |
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|
| T |
7565001 |
aaattt |
7565006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 3926961 - 3926855
Alignment:
| Q |
4 |
gaaatctcttgataatactctttttctaaatcaagagaaagaatggcccatgaattgttgttctttttatctagtatgacccaattaatggttccactta |
103 |
Q |
| |
|
|||||||||||||| |||| ||| |||||||||||||||||||| ||||||||| | |||||||| || | |||| |||||||||| || ||||||| |
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| T |
3926961 |
gaaatctcttgataggactcgtttcctaaatcaagagaaagaatgacccatgaatcatagttcttttgattttctatggcccaattaattgtgccactta |
3926862 |
T |
|
| Q |
104 |
caaattt |
110 |
Q |
| |
|
||||||| |
|
|
| T |
3926861 |
caaattt |
3926855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 55419687 - 55419578
Alignment:
| Q |
1 |
tgcgaaatctcttgataatactctttttctaaatcaagagaaagaatggcccatgaattgttgttctttttatctagtatgacccaattaatggttccac |
100 |
Q |
| |
|
|||| |||| |||||||| |||| ||| ||||||| |||||||||||| ||||| || || |||| || |||| |||| ||||||||||||| |||| |
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|
| T |
55419687 |
tgcggaatcacttgataagactcatttcctaaatccagagaaagaatgacccatagatagtatttctcttgatcttctatggcccaattaatggtgccac |
55419588 |
T |
|
| Q |
101 |
ttacaaattt |
110 |
Q |
| |
|
|||||||||| |
|
|
| T |
55419587 |
ttacaaattt |
55419578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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