View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4547-Insertion-2 (Length: 603)
Name: NF4547-Insertion-2
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547-Insertion-2 |
 | |
|
| [»] chr6 (22 HSPs) |
| |
|
| [»] scaffold1408 (2 HSPs) |
| | |
|
| [»] scaffold0428 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 565; Significance: 0; HSPs: 22)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 8 - 603
Target Start/End: Original strand, 33359127 - 33359720
Alignment:
| Q |
8 |
ggaacaaccgcacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaaca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33359127 |
ggaacaaccgcacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaaca |
33359226 |
T |
|
| Q |
108 |
agcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgtta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33359227 |
agcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactc--caaaatctgtta |
33359324 |
T |
|
| Q |
208 |
tcttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatgaaaaccaacaaaaatagagcattgctttgattaaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33359325 |
tcttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatgaaaaccaacaaaactagagcattgctttgattaaa |
33359424 |
T |
|
| Q |
308 |
agataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcat |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
33359425 |
agataattattttcaattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccatagttgtttaatgctgctt |
33359524 |
T |
|
| Q |
408 |
ttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33359525 |
ttcttcaagatcaattctacaagttcattggagttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaa |
33359624 |
T |
|
| Q |
508 |
gactcgttgggcttcttgagatatatgcattgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatcttttcatgaa |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33359625 |
gactcgttgggcttcttgagatatatgcattgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccaccatcttttcatgaa |
33359720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 590
Target Start/End: Original strand, 33263055 - 33263635
Alignment:
| Q |
21 |
atattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttagaa |
120 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||| |||| ||||||||||| || || | | ||| || ||| |||||||||||||| ||| |||||| |
|
|
| T |
33263055 |
atatttagatcttcaagagagcccagaccgaatatggtgttcggtatgcttacaaggttatagcaattttctaaattcaagtaaacaagatttcttagaa |
33263154 |
T |
|
| Q |
121 |
gtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttatcttttctagctc |
220 |
Q |
| |
|
|||||| ||||||||||||||| ||||| ||| |||||||| |||||||| | |||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
33263155 |
gtccaatagatggatccaactcaacaagatttgtacatccttccaaatttaaccactcaagatttgggaactctccaaaatctattatcttttctagctc |
33263254 |
T |
|
| Q |
221 |
tttggagttacttagatccaatgttctcaaattgggaagatactgtgacatgaa-aaccaacaaaaatagag-cattgctttgattaaaagataattgtt |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||||| |||| ||||||||| |||| ||||||| |
|
|
| T |
33263255 |
gatggagtgacttagatccaatgttctcaaattgggcagatactgtgacatgaataaacaataaaaatagagccattactttgattataagagaattgtt |
33263354 |
T |
|
| Q |
319 |
ttcaattggtttatatttctaa---aataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaa |
415 |
Q |
| |
|
| |||| | |||||||||||| || || |||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||| |||| ||| |
|
|
| T |
33263355 |
tcgaatttggttatatttctaagatgatgaatattaataataagagaatttatagtaccttcttgtttttccatagttgtgtaatgttgcttttcaccaa |
33263454 |
T |
|
| Q |
416 |
gatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgtt |
515 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| | ||||||| || | |||| ||| ||||||||||| || |
|
|
| T |
33263455 |
gatcaattctacaagttcattggggtgaaaacttgatggcaaatactttgaaggatattcatcccactcaacatatctcaatttgtttgaaagacaactt |
33263554 |
T |
|
| Q |
516 |
gggcttcttgagatata---tgcat---tgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccacc |
590 |
Q |
| |
|
||||||| ||||||||| | | | |||||||||||| |||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
33263555 |
gggcttcctgagatatacattccgtacctgatgatgagcaatctaagattactcatttttgacaattgttcaacgtccacc |
33263635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 473
Target Start/End: Original strand, 33057970 - 33058438
Alignment:
| Q |
8 |
ggaacaaccgcacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaaca |
107 |
Q |
| |
|
|||||| || ||||||||| | | || ||||||||||||||| |||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
33057970 |
ggaacagccacacatatttaggtattgaagagagctaagaccgaatatgttgttgggtatgctaactagacttttgcaatcttttaggttcaagtaaaca |
33058069 |
T |
|
| Q |
108 |
agcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgtta |
207 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| ||||| |||| |||||||| ||||| || ||||||||||||||||||||||||||| ||| |
|
|
| T |
33058070 |
agctttcttagaagtccaatagatggatccaactcaacaaggtttatacatccttccaaatctaaacgctcaagattcgggaactctccaaaatctatta |
33058169 |
T |
|
| Q |
208 |
tcttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatgaaaa-ccaacaaaaatagagcattgctttgattaa |
306 |
Q |
| |
|
|||||||||| | | |||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||| |||| |||||||| |
|
|
| T |
33058170 |
tcttttctagatttctggagtgacgtagatccaatgttctcaaattgggaagatactgtgacgtgaaaaaccaacaaagttagc-cattactttgattgt |
33058268 |
T |
|
| Q |
307 |
aagataattgttttcaattggtttatatttctaaaat---aaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgct |
403 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||||| || ||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||| | |
|
|
| T |
33058269 |
aagagaattgttttgaatttgtttatatttctaagatgataaatattaataataatagaatttatagtaccttcttgtttttccatagttgtttaatgtt |
33058368 |
T |
|
| Q |
404 |
gcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatat |
473 |
Q |
| |
|
|| | | |||||||||||||||||||||||||||||| |||| ||| ||||||||||| | |||||||| |
|
|
| T |
33058369 |
gctctccgtcaagatcaattctacaagttcattggggtgaaaatttgatggcaaatacttggaaggatat |
33058438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 33304902 - 33305347
Alignment:
| Q |
19 |
acatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttag |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | || | ||| |||||||||||||||||| |||| |
|
|
| T |
33304902 |
acatatttagatcttcaagagagctaagactgaatatgttattgggtatgcttactagatttttgcattcatataaattcaagtaaacaagctttcttag |
33305001 |
T |
|
| Q |
119 |
aagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttatcttttctagc |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||| ||||||||| ||||||| |||| |
|
|
| T |
33305002 |
aagtccaatagatggatccaactccacaaggtttatacatccttccaaatttagcttctcaagattcgggaactccccaaaatctagtatctttactagt |
33305101 |
T |
|
| Q |
219 |
tctttggagttacttagatcc-aatgttctcaaattgggaagatactgtgacatg-aaaaccaacaaaaatagagc-attgctttgattaaaagataatt |
315 |
Q |
| |
|
||| ||||| ||||||||| |||||| |||||||||| |||||||| |||||| ||||| |||||||||| | | ||| |||||| || |||||||| |
|
|
| T |
33305102 |
tctaaggagtgtcttagatccaaatgtt-tcaaattgggcagatactgggacatgtaaaacaaacaaaaatacaccaattactttgactatgagataatt |
33305200 |
T |
|
| Q |
316 |
gttttcaattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaa |
415 |
Q |
| |
|
|||| | || |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| ||| ||| |||| || |
|
|
| T |
33305201 |
gtttcaattttgtttatatttctaagataaacattaataataagagaatttatagtaccttcttgtttgtccatagttgttcaattttgctgctctttaa |
33305300 |
T |
|
| Q |
416 |
gatcaattctacaagttcattggggttaaaacttgttggcaaatact |
462 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
33305301 |
gatcaattctacaagttcattggggtgaaaatttgatggcaaatact |
33305347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 582
Target Start/End: Original strand, 33272212 - 33272789
Alignment:
| Q |
9 |
gaacaaccgcacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaa |
108 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
33272212 |
gaacaaccacgcatatttagatcttcaagagagcaaagatcaaatatgttgttgggtatgcttactagatttttgcaattttttaaattcaagtaaacaa |
33272311 |
T |
|
| Q |
109 |
gcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttat |
208 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||| ||| ||| |||| |||||||| | ||||||||||||||||||||||||||| || |
|
|
| T |
33272312 |
gctttcttagaagtccaatagatggatccaactccacaagatttttacacccttccaaatttaaccactcaagattcgggaactctccaaaatctacaat |
33272411 |
T |
|
| Q |
209 |
cttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatg-aaaaccaacaaaaatag-agcattgctttgattaa |
306 |
Q |
| |
|
|||| ||| | | |||||| ||||||| ||||| |||||||||||||||||||| ||||||| |||| ||||||||||| | |||| | |||||| |
|
|
| T |
33272412 |
ctttaatagttttctggagtaacttagacccaatcttctcaaattgggaagatac--tgacatgaaaaaataacaaaaatagaaccattacattgattct |
33272509 |
T |
|
| Q |
307 |
aagataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttata-ttaccttcttgtttttccgtagttgtttaatgctgc |
405 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||| ||||||||| ||| || |
|
|
| T |
33272510 |
aagagaattgtttcaaatttgtttatatttctaagataaacattaataat---agaatttataggtaccttcttgtttttccatagttgtttgatgtcgc |
33272606 |
T |
|
| Q |
406 |
atttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttga |
505 |
Q |
| |
|
||| ||||||||||||||| ||| |||||||||| |||||||||||| | | ||| | |||||||| | ||||||| || | |||||||||| ||||| |
|
|
| T |
33272607 |
tattcatcaagatcaattctataaggtcattggggtgaaaacttgttggtagacacttgaaaggatatccatcccactcaacatatcttaatgcatttga |
33272706 |
T |
|
| Q |
506 |
aagactcgttgggcttcttgagatat-----atgca-ttgatgatgagcactctaagattactcatttttgacaagtgttcaa |
582 |
Q |
| |
|
||| |||| | | || | || ||||| ||| ||||| ||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
33272707 |
aaggctcgatagactacctgggatattccgaccgcacttgattatgagcaatctaagattactcatttttgccaagtgttcaa |
33272789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 18 - 582
Target Start/End: Original strand, 33285963 - 33286535
Alignment:
| Q |
18 |
cacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagctttttta |
117 |
Q |
| |
|
||||||| | ||| || ||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| ||| ||| |
|
|
| T |
33285963 |
cacatatatagatatttaagagagcttagaccgaatatgttgttgggtatgcttacaagatttttgcaatcttttaaattcaagtaaacaaggtttctta |
33286062 |
T |
|
| Q |
118 |
gaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttatcttttctag |
217 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| | | |||||||| |||||||| | |||||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
33286063 |
gaagtccaatagatggatccaactccaaaaggctgatacatccttccaaatttaaccactcaagattcgggaactctccgaaatctactatctttactag |
33286162 |
T |
|
| Q |
218 |
ctctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatg-aaaaccaacaaaaatagag-cattgctttgattaaaagataatt |
315 |
Q |
| |
|
| |||||||| | |||||||||| ||||||||||||||||||||| | ||| ||||| ||||||||| ||| |||| ||||||| |||| |||| |
|
|
| T |
33286163 |
ttttttggagtatcgtagatccaatcccctcaaattgggaagatactgtaatatgaaaaacaaacaaaaatggagccattaatttgattttaagagaatt |
33286262 |
T |
|
| Q |
316 |
gttttcaattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaa |
415 |
Q |
| |
|
|||| |||| |||||||||||||| || |||||| ||||||||| |||||||| ||||||||| ||| ||| ||||||||||||| ||| | | ||| |
|
|
| T |
33286263 |
gtttcaaatttgtttatatttctaagatgaacatttataataagataatttatagtaccttcttctttctccatagttgtttaatgttgctactatgcaa |
33286362 |
T |
|
| Q |
416 |
gatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgtt |
515 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| ||||||||| | | |||||||| | |||||||| | |||||||| ||||||||||||| | |
|
|
| T |
33286363 |
gatcaattctacaagttcattggggtgaaaatttgatggcaaatatttgaaaggatatccagtccactgaacatatcttaatttgtttgaaagactcaat |
33286462 |
T |
|
| Q |
516 |
gggcttcttgagatatatgca------ttgatgatgagcactctaagattactcatttttgacaagtgttcaa |
582 |
Q |
| |
|
|||||| ||||||| || |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33286463 |
aggcttccggagatattcacaccccacatgatgatgagcaatctaagattactcatttttgacaagtgttcaa |
33286535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 20 - 473
Target Start/End: Complemental strand, 31562476 - 31562021
Alignment:
| Q |
20 |
catattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttaga |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||| | ||| | | | | | | ||| ||||||||| |||||||| |||| |
|
|
| T |
31562476 |
catatttagatcttcaagagagctaagactgaatatgttgttgggtatgctttccagactatagcagccgtctaaattcaagtaagaaagcttttctaga |
31562377 |
T |
|
| Q |
120 |
agtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttatcttttctagct |
219 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| |||| ||| |||| ||||| ||||||||||||||| ||||||||||| |||||||| | || | |
|
|
| T |
31562376 |
agtccaatagatggatccaactccacaaggtttatacattcttccaaacttagccactcaagattcgggaacgctccaaaatctattatctttacaagat |
31562277 |
T |
|
| Q |
220 |
ctttggagttacttagatccaatgttctcaaattgggaagatactgtgacat-gaaaaccaacaaaaatagag-cattgctttgattaaaagataattgt |
317 |
Q |
| |
|
| |||||| ||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
31562276 |
ttatggagtgacttagatccaattttcttaaattgggaagatactgtgacataaaaaacaaacaaaaatagagccattactttgattaaaagataattgt |
31562177 |
T |
|
| Q |
318 |
tttcaattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaaga |
417 |
Q |
| |
|
|| |||| ||||||| |||||| |||| | ||||||||||| |||||| | ||||||||||||| ||| |||||| ||||||||| | || ||||| |
|
|
| T |
31562176 |
ttctaatttgtttatagttctaagataattagtaataataagataatttacagtaccttcttgtttgtccatagttgcgtaatgctgcttctcgccaaga |
31562077 |
T |
|
| Q |
418 |
tcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatat |
473 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||||||| | |||||||| |
|
|
| T |
31562076 |
tcaattctacaagttcataggggtgaaaacttgatggcaaatacttgaaaggatat |
31562021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 8 - 511
Target Start/End: Original strand, 9167180 - 9167679
Alignment:
| Q |
8 |
ggaacaaccgcacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaaca |
107 |
Q |
| |
|
|||||| || ||||||||| |||||| ||||||||||||||| ||||||||||||||||| |||| ||||||| ||||||||| |||||||||||| |
|
|
| T |
9167180 |
ggaacagccacacatatttagatctttaagagagctaagaccgaatatgttgttgggtattcttattagatttccacaatcttttacattcaagtaaaca |
9167279 |
T |
|
| Q |
108 |
agcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgtta |
207 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||| ||| ||||||||||| || |
|
|
| T |
9167280 |
agctttcttagaagtccaagagatggatccaactccacaagttttacacatccttccaaatctaaccactcaagattcggaaaccctccaaaatctagta |
9167379 |
T |
|
| Q |
208 |
tcttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatg-aaaaccaacaaaaatagag-cattgctttgatta |
305 |
Q |
| |
|
||||| ||||| || ||||| |||||||||||| || | | |||| || |||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
9167380 |
tctttactagcactcgggagtaccttagatccaatatt------tggttaagaaaccgtgacatgaaaaaccaacaaaaatagagccattactttgattg |
9167473 |
T |
|
| Q |
306 |
aaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgc |
405 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||| ||||||||||||| |||||| |||||| |||||||||| ||||||||||||| ||| |
|
|
| T |
9167474 |
taagaaaattgtttcgaatttgtttatatttctaaaataaacggtaataataagagagtttatagtacctttttgtttttccatagttgtttaatgttgc |
9167573 |
T |
|
| Q |
406 |
atttcttcaagatcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttga |
505 |
Q |
| |
|
|||||||||| || |||||||||||||| || |||||| | ||||||||||| | |||||||| | ||||| || | |||||||| |||| || |
|
|
| T |
9167574 |
tccagttcaagatcagttgtacaagttcattggcgtgaaaactcgatggcaaatacttgaaaggatatcgataccactcaagatatcttaattcgttcga |
9167673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 8 - 449
Target Start/End: Original strand, 33410370 - 33410790
Alignment:
| Q |
8 |
ggaacaaccgcacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaaca |
107 |
Q |
| |
|
|||||| || ||||||| | ||||||||||||||||||||| |||||| |||||||||||||||||| |||| || ||| | || |||||||||||| |
|
|
| T |
33410370 |
ggaacagccacacatatatagatcttcaagagagctaagacagaatatgctgttgggtatgcttactaaatttatgcaatagtccaaattcaagtaaaca |
33410469 |
T |
|
| Q |
108 |
agcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgtta |
207 |
Q |
| |
|
|||||| |||||||||||| |||| ||||||||||||||||||| |||||| || |||||||| | ||||||||||||||||||||||||||| ||| |
|
|
| T |
33410470 |
agctttcttagaagtccaatcgatgaatccaactccacaagtttttcacatctttccaaatttaacgactcaagattcgggaactctccaaaatctatta |
33410569 |
T |
|
| Q |
208 |
tcttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatgaaaa-ccaacaaaaatagag-cattgctttgatta |
305 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| | |||||||||||| ||||||||||||||||| | ||||||||||||| |||| ||||||||| |
|
|
| T |
33410570 |
tcttttcta---ttttggagtcacttagatccaatgctttcaaattgggaaaatactgtgacatgaaaagcaaacaaaaatagagacattactttgatta |
33410666 |
T |
|
| Q |
306 |
aaagataattgttttcaattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgc |
405 |
Q |
| |
|
|| | ||||||||| |||| |||||||| |||| |||||||||| |||||||||| |||||| ||||||||| | ||||| |
|
|
| T |
33410667 |
taacagaattgttttgaatttgtttatatctcta--------------------agaatttatagtaccttcttgcttttccatagttgtttgaagctgc |
33410746 |
T |
|
| Q |
406 |
atttcttcaagatcaattctacaagttcattggggttaaaactt |
449 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
33410747 |
tattcttcaagatcaattcaacaagttcattagggtgaaaactt |
33410790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 33644267 - 33643986
Alignment:
| Q |
8 |
ggaacaaccgcacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaaca |
107 |
Q |
| |
|
||||||||| | || |||| |||||| |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |
|
|
| T |
33644267 |
ggaacaaccacccaaatttagatcttgaagagagctaagactgaatatgttgttgggtatgcttaccagattttcacaatcttttacattcaagtaaaca |
33644168 |
T |
|
| Q |
108 |
agcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgtta |
207 |
Q |
| |
|
|||||| ||| |||||||| |||| ||||||||||||||| ||||| ||||||| |||||||| | ||||||||||||||||||||||||||| ||| |
|
|
| T |
33644167 |
agctttcttaaaagtccaatagataaatccaactccacaaggtttacgcatccttccaaatttaaccactcaagattcgggaactctccaaaatctatta |
33644068 |
T |
|
| Q |
208 |
tcttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatgaaaa-ccaacaaaaata |
288 |
Q |
| |
|
|||||||||||| | | || | ||||| ||||||| |||||| |||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
33644067 |
tcttttctagctttctagaatcacttaaatccaatcttctcagattgggaagatactgtgacatgaaaagccaagaaaaata |
33643986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 8 - 290
Target Start/End: Original strand, 33388477 - 33388758
Alignment:
| Q |
8 |
ggaacaaccgcacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaaca |
107 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| | || ||| || |||||||||||| |
|
|
| T |
33388477 |
ggaacaaccacatatatttagatcttcaagagagctaagaccggatatgttgttgggtatgcttactagatttacgcaaccttccaaattcaagtaaaca |
33388576 |
T |
|
| Q |
108 |
agcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgtta |
207 |
Q |
| |
|
|||||| |||||||||||| ||||||||| ||||| ||||| || ||||| || |||||||| | ||||||||||||||||||||||||||| || |
|
|
| T |
33388577 |
agctttcttagaagtccaatagatggatctaactcaacaaggttcgcacataattccaaatttaaccactcaagattcgggaactctccaaaatctacta |
33388676 |
T |
|
| Q |
208 |
tcttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatg-aaaaccaacaaaaataga |
290 |
Q |
| |
|
|||||||||| | | |||||| |||||||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
33388677 |
tcttttctagatttctggagtgtcttagatccaatcttctcaaattgggaagatac--tgacatgaaaaaacaacaaaaataga |
33388758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 28869853 - 28869610
Alignment:
| Q |
19 |
acatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttag |
118 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||||||| || ||||||| ||| | | || | ||||| |||||||| ||||||||| |||| |
|
|
| T |
28869853 |
acatatttagatcttcaagagagttaagaccgaatatgttgttgg-tacacttactatattatagcaaccgtttaaattcaagtatacaagctttcttag |
28869755 |
T |
|
| Q |
119 |
aagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttatcttttctagc |
218 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| |||| ||| ||||||| |||||||| |||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
28869754 |
aagtccaatagatggatccaactcaacaaggtttatacactctttcaactttagcttctcaagatttgggaactctccaaaatctattatcttttctaga |
28869655 |
T |
|
| Q |
219 |
tctttggagttacttagatccaatgttctcaaattgggaagatac |
263 |
Q |
| |
|
| |||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
28869654 |
ttgctggagtgacttagatgcaatgttctcaaattgggaagatac |
28869610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 351 - 582
Target Start/End: Original strand, 33401373 - 33401610
Alignment:
| Q |
351 |
aataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttg |
450 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33401373 |
aataataagagaatttatagtaccttcttgtttttccatagttgtttaatgttgctacaccacaagatcaattctacaagttcattggggtgaaaacttg |
33401472 |
T |
|
| Q |
451 |
ttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggcttcttgagatat-----atgca-ttgatgat |
544 |
Q |
| |
|
|||||||||||| | |||||||| | | ||| | || | |||||||| ||||||||||| ||| || || |||||||| |||| |||||||| |
|
|
| T |
33401473 |
ttggcaaatacttgaaaggatattcatgccaatcaacatatcttaattcgtttgaaagaaaatttgagcctcctgagatattccaattgcacttgatgat |
33401572 |
T |
|
| Q |
545 |
gagcactctaagattactcatttttgacaagtgttcaa |
582 |
Q |
| |
|
||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
33401573 |
gagaagtctaagattactcatttttgataagtgttcaa |
33401610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 33399374 - 33399515
Alignment:
| Q |
20 |
catattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttaga |
119 |
Q |
| |
|
||||||| ||| |||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
33399374 |
catatttagatattcaagagagctaagatcgaatatgttgttgggtatgcttaccagattttcacaatcttttacattcaagcaaacaagctttcttaga |
33399473 |
T |
|
| Q |
120 |
agtccaagagatggatccaactccacaagttttacacatcct |
161 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
33399474 |
agtccaatagatggatccaactccacaagttttttacatcct |
33399515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 322 - 590
Target Start/End: Original strand, 33388768 - 33389039
Alignment:
| Q |
322 |
aattggtttatatttctaaaataaacattaataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaa |
421 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| | ||| |||| |||||||||||| |||| ||||||||| ||| || | | |||||||||| |
|
|
| T |
33388768 |
aatttgtttatatttctaagataaacattaataatca---aatgtataataccttcttgttcttccatagttgtttgatgtcgctatacatcaagatcaa |
33388864 |
T |
|
| Q |
422 |
ttctacaagttcattggggttaaaacttgttggcaaatactggcaaggatatgcctcccactgaataaatcttaatgcgtttgaaagactcgttgggctt |
521 |
Q |
| |
|
|||||||| ||| |||||| |||||||| ||||||||||| | ||||||| | ||||| || | ||||||||| |||||||||||||| |||||| |
|
|
| T |
33388865 |
ctctacaagatcactggggtgaaaacttgatggcaaatacttgaaaggataataattccactcaacatatcttaatgtgtttgaaagactcgatgggcta |
33388964 |
T |
|
| Q |
522 |
cttgagatatatgca------ttgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccacc |
590 |
Q |
| |
|
|||| ||||| | | ||||||||||| | |||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
33388965 |
cttgggatattcggaccccacttgatgatgagtaatctaagattactcatttttgacaactgttcaacgtccacc |
33389039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 96 - 340
Target Start/End: Original strand, 33399522 - 33399768
Alignment:
| Q |
96 |
ttcaagtaaacaagcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctc |
195 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||| ||||| || |||| || ||||| || | |||||||| |||||||||| |
|
|
| T |
33399522 |
ttcaagtaaacaagctttcttagaagtccaatagatggatccaactcaacaaggttcttacataattccaaatctaaccactcaagatttgggaactctc |
33399621 |
T |
|
| Q |
196 |
caaaatctgttatcttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatga-aaaccaacaaaaatagag-ca |
293 |
Q |
| |
|
|||||||| ||||||||||||| | | | || ||||||||||| ||| ||||||| |||||||||||||||||| || ||| ||||| |||| || |
|
|
| T |
33399622 |
caaaatctattatcttttctagatttattgaacccattagatccaattttcgcaaattgcgaagatactgtgacatgattaaacaataaaaacagagaca |
33399721 |
T |
|
| Q |
294 |
ttgctttgattaaaagataattgttttcaattggtttatatttctaa |
340 |
Q |
| |
|
|| ||||||||| || | |||||||| |||| |||||||||||||| |
|
|
| T |
33399722 |
ttactttgattataaaagaattgtttcgaatttgtttatatttctaa |
33399768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 355 - 458
Target Start/End: Complemental strand, 33643935 - 33643832
Alignment:
| Q |
355 |
ataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttgg |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |||||||||| |||||||||||||| |||||| | |||| ||| ||| |
|
|
| T |
33643935 |
ataagagaatttatattaccttcttgtttttccatagttgtctaatgttgctcttcttcaagaacaattctacaagttgattgggctgaaaatttgatgg |
33643836 |
T |
|
| Q |
455 |
caaa |
458 |
Q |
| |
|
|||| |
|
|
| T |
33643835 |
caaa |
33643832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 9167705 - 9167750
Alignment:
| Q |
537 |
ttgatgatgagcactctaagattactcatttttgacaagtgttcaa |
582 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
9167705 |
ttgatgatgagcaatctaagactactcatttttgacaagtgttcaa |
9167750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 539 - 587
Target Start/End: Original strand, 33058513 - 33058561
Alignment:
| Q |
539 |
gatgatgagcactctaagattactcatttttgacaagtgttcaaagtcc |
587 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33058513 |
gatgaagagcaatctgagattactcatttttgacaagtgttcaaagtcc |
33058561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 539 - 582
Target Start/End: Original strand, 33410916 - 33410959
Alignment:
| Q |
539 |
gatgatgagcactctaagattactcatttttgacaagtgttcaa |
582 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
33410916 |
gatgatgagcaatctaagattactcatttttgaaaagtgttcaa |
33410959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 575
Target Start/End: Complemental strand, 31561935 - 31561898
Alignment:
| Q |
538 |
tgatgatgagcactctaagattactcatttttgacaag |
575 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31561935 |
tgatgatgagcaatctaagattactcatttttgacaag |
31561898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 540 - 582
Target Start/End: Complemental strand, 33643744 - 33643702
Alignment:
| Q |
540 |
atgatgagcactctaagattactcatttttgacaagtgttcaa |
582 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
33643744 |
atgatcagcaatctaagattactcatttttgacaagtattcaa |
33643702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 473
Target Start/End: Complemental strand, 17440484 - 17440035
Alignment:
| Q |
20 |
catattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttaga |
119 |
Q |
| |
|
||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17440484 |
catatttagatattcaagagagctaagacagaatatgttgttgggtatgcttactagattatagcaatcttttaagttcaagtaaacaagctttcttaga |
17440385 |
T |
|
| Q |
120 |
agtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttatcttttctagct |
219 |
Q |
| |
|
||||||| ||||||||||| ||||||||| || ||||||||| |||||||| | |||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
17440384 |
agtccaattgatggatccaattccacaagtctttcacatccttccaaatttaaccactcaagatttgggaactctccaaaatccattatcttttctagct |
17440285 |
T |
|
| Q |
220 |
ctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatgaaaaccaacaaaaatagag-cattgctttgattaaaagataattgtt |
318 |
Q |
| |
|
| | |||| ||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |||| | ||||||| |||| ||||||| |
|
|
| T |
17440284 |
ttctagagtcacttagatccaatcttctcaaattgggaagatactgtgacataaaa------aaaaatagagccattacattgattataagaaaattgtt |
17440191 |
T |
|
| Q |
319 |
ttcaattggtttatatttctaaaataaacattaa-taataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaaga |
417 |
Q |
| |
|
| |||| ||||||||||| || ||||||||||| |||||||||||||||| ||||||||||||||||| ||| | ||||||| ||| | ||| | |
|
|
| T |
17440190 |
tcgaatttgtttatatttcaaagataaacattaattaataagagaatttatggtaccttcttgtttttccataggtttttaatgttgctcccatccaaaa |
17440091 |
T |
|
| Q |
418 |
tcaattctacaagttcattggggttaaaacttgttggcaaatactggcaaggatat |
473 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||| | |||||||| |
|
|
| T |
17440090 |
tcaattctactagttcattggggtgaaaacttgttggcaaatacttgaaaggatat |
17440035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 539 - 590
Target Start/End: Complemental strand, 17439960 - 17439909
Alignment:
| Q |
539 |
gatgatgagcactctaagattactcatttttgacaagtgttcaaagtccacc |
590 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
17439960 |
gatgatgagcaatctaagattactcatttttgacaaatgttcagcgtccacc |
17439909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 1071 - 1387
Alignment:
| Q |
19 |
acatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttag |
118 |
Q |
| |
|
|||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||| | | || | ||| |||||||||||||||||| |||| |
|
|
| T |
1071 |
acatatttagatatttaagagagctaagaccgaatatgttgttgggtatgcttactagattatagcaacgctctaaattcaagtaaacaagctttcttag |
1170 |
T |
|
| Q |
119 |
aagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttatcttttctagc |
218 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| || |||||||| | |||||||| || |||| |||||||||| ||||||||||||| |
|
|
| T |
1171 |
aagtccaatagatggatccaactccacaagttttatacatctttccaaatttaaccactcaagattaggaaactgtccaaaatcttctatcttttctagc |
1270 |
T |
|
| Q |
219 |
tctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatg-aaaaccaacaaaaatagag-cattgctttgattaaaagataattg |
316 |
Q |
| |
|
| ||||||| ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| | |||| ||| |||| |||| |||| |
|
|
| T |
1271 |
ttcttggagtcacttagatccaatcttctcaaattgggaagatgctgtgacatgaaaaaccaacaaaaatagggtcattacttcgattgtaagagaattt |
1370 |
T |
|
| Q |
317 |
ttttcaattggtttata |
333 |
Q |
| |
|
|||| |||| ||||||| |
|
|
| T |
1371 |
ttttgaatttgtttata |
1387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 355 - 473
Target Start/End: Original strand, 1385 - 1503
Alignment:
| Q |
355 |
ataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttgg |
454 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||| || | || ||| |||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
1385 |
ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg |
1484 |
T |
|
| Q |
455 |
caaatactggcaaggatat |
473 |
Q |
| |
|
|| ||||| | |||||||| |
|
|
| T |
1485 |
cagatacttgaaaggatat |
1503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 19 - 333
Target Start/End: Original strand, 6817 - 7133
Alignment:
| Q |
19 |
acatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttag |
118 |
Q |
| |
|
|||||||| ||| || ||||||||||||||| ||||||||||||||||||||||||||||| | | || | ||| |||||||||||||||||| |||| |
|
|
| T |
6817 |
acatatttagatatttaagagagctaagaccgaatatgttgttgggtatgcttactagattatagcaacgctctaaattcaagtaaacaagctttcttag |
6916 |
T |
|
| Q |
119 |
aagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttatcttttctagc |
218 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| || |||||||| | |||||||| || |||| |||||||||| ||||||||||||| |
|
|
| T |
6917 |
aagtccaatagatggatccaactccacaagttttatacatctttccaaatttaaccactcaagattaggaaactgtccaaaatcttctatcttttctagc |
7016 |
T |
|
| Q |
219 |
tctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatg-aaaaccaacaaaaatagag-cattgctttgattaaaagataattg |
316 |
Q |
| |
|
| ||||||| ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| | |||| ||| |||| |||| |||| |
|
|
| T |
7017 |
ttcttggagtcacttagatccaatcttctcaaattgggaagatgctgtgacatgaaaaaccaacaaaaatagggtcattacttcgattgtaagagaattt |
7116 |
T |
|
| Q |
317 |
ttttcaattggtttata |
333 |
Q |
| |
|
|||| |||| ||||||| |
|
|
| T |
7117 |
ttttgaatttgtttata |
7133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 355 - 473
Target Start/End: Original strand, 7131 - 7249
Alignment:
| Q |
355 |
ataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttgg |
454 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||| || | || ||| |||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
7131 |
ataagagaatttatagtaccttcttgtttttccatagttgtttaatgcagcttctcaccaaaatcaattctacaagttcagcagggtgaaaacttgatgg |
7230 |
T |
|
| Q |
455 |
caaatactggcaaggatat |
473 |
Q |
| |
|
|| ||||| | |||||||| |
|
|
| T |
7231 |
cagatacttgaaaggatat |
7249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 31498718 - 31498434
Alignment:
| Q |
8 |
ggaacaaccgcacatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaaca |
107 |
Q |
| |
|
|||||| || ||||||||| |||||| |||| |||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||| |||||| ||||| |
|
|
| T |
31498718 |
ggaacacccacacatatttagatctttaagaaagctgagaccaaatatgttgttgggtatgcttacaagattcttgcaatcttttaaattcaaggaaaca |
31498619 |
T |
|
| Q |
108 |
agcttttttagaagtccaagagatggatccaa-ctccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgtt |
206 |
Q |
| |
|
| |||| |||||||||||| |||||||||||| | | |||| |||| |||||||| || ||||| | |||||||| |||||||||||||||| || |
|
|
| T |
31498618 |
atctttcttagaagtccaatagatggatccaaccgcaacaaatttt-tacatccttccagatttaagtgctcaagatttgggaactctccaaaatttggc |
31498520 |
T |
|
| Q |
207 |
atcttttctagctctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatgaaa-accaacaaaaatagag |
291 |
Q |
| |
|
| |||| ||| | | |||| ||||||||||| ||| ||||||| || |||||||||||||||||| |||||| ||||||||| |
|
|
| T |
31498519 |
acctttattagatgtgaagagtagcttagatccaaagttatcaaattcggcagatactgtgacatgaaagaccaaccaaaatagag |
31498434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 21 - 276
Target Start/End: Complemental strand, 31503818 - 31503563
Alignment:
| Q |
21 |
atattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttagaa |
120 |
Q |
| |
|
|||||| |||| |||||| | || ||||||||||||||| || ||| ||||| || || |||| | ||||| ||||||||||||||||||||| |||||| |
|
|
| T |
31503818 |
atatttagatcatcaagacaactgagaccaaatatgttgctgagtaggcttattatatgtttgcagtctttcaagttcaagtaaacaagctttgttagaa |
31503719 |
T |
|
| Q |
121 |
gtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttatcttttctagctc |
220 |
Q |
| |
|
| |||| ||||||||| | || ||||||||||| |||||||| || || |||| ||||| ||||||||||||||||||| || |||||| || | |
|
|
| T |
31503718 |
gaccaatagatggatctatctgcacaagttttatacatccttccagatctagccgctcaaggttcgggaactctccaaaatgtggcatctttattaaatt |
31503619 |
T |
|
| Q |
221 |
tttggagttacttagatccaatgttctcaaattgggaagatactgtgacatgaaaa |
276 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
31503618 |
tttggagtggcttagatccaaatttctcaaattgcgcagatactgtgacatgaaaa |
31503563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 31157645 - 31157814
Alignment:
| Q |
35 |
aagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttagaagtccaagagatgga |
134 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||| || |||| | ||||||||||| |||||| |||| |||||| |
|
|
| T |
31157645 |
aagagagctgagaccaagtatgttgttcggtatgcttactagatttttgcaatctttcaatttcatgaaaacaagctttcttagaaccccaattgatgga |
31157744 |
T |
|
| Q |
135 |
tccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctg |
204 |
Q |
| |
|
|| | || |||||| |||| ||| ||||| | |||||||| ||| ||||| || | |||||||||||||| |
|
|
| T |
31157745 |
tcaatctgcacaagctttatacagcctttgagatttagctcttctagatttggcatctctccaaaatctg |
31157814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 31472170 - 31471897
Alignment:
| Q |
19 |
acatattttgatcttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttag |
118 |
Q |
| |
|
|||||||| |||| |||||| ||| ||||||||||||||| || || ||||| || | ||||| |||| || || |||||||| ||||||||| | || |
|
|
| T |
31472170 |
acatatttagatcatcaagacagcccagaccaaatatgttgctgattaagcttattatacttttgcaatcattcaaattcaagtatacaagctttgtaag |
31472071 |
T |
|
| Q |
119 |
aagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttatcttttctagc |
218 |
Q |
| |
|
||| | || ||| | |||||||| ||||||||||| |||||||| || || |||| |||||||| |||||||||||||||| | |||||| | |
|
|
| T |
31472070 |
aagcctaatagacgaatccaactgcacaagttttatacatccttccagatctagccgctcaagatttgggaactctccaaaatgcggcatctttatgaaa |
31471971 |
T |
|
| Q |
219 |
tctttggagttacttagatccaatgttctcaaattgggaagatactgtgacatg-aaaaccaacaaaaatagag |
291 |
Q |
| |
|
| || ||||| ||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||| |
|
|
| T |
31471970 |
ttttgggagtagcttagatccaaatttctcaaattgggcagatactgtgacatgaaaaatcaacaaaaatagag |
31471897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 31478606 - 31478485
Alignment:
| Q |
80 |
tttgtaatcttttaagttcaagtaaacaagcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttca |
179 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||| ||| ||| | ||||||||||||||||| ||||||||||| |||||||| || || |||| ||| |
|
|
| T |
31478606 |
tttgcaatctttcaaattcaagtaaacaagcttcgttaaaagactaagagatggatccaactgcacaagttttatacatccttccagatctagccgctca |
31478507 |
T |
|
| Q |
180 |
agattcgggaactctccaaaat |
201 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31478506 |
agattcgggaactctccaaaat |
31478485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 35 - 160
Target Start/End: Original strand, 31028006 - 31028131
Alignment:
| Q |
35 |
aagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttagaagtccaagagatgga |
134 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||||| |||||||||| ||| ||| ||||||||| | ||||||||| | ||||| |||| ||||||| |
|
|
| T |
31028006 |
aagagaggtgagaccaaatatgttgttaggtatgcttattagatttttgcaatttttcaagttcaagaatacaagctttctcagaagaccaatagatgga |
31028105 |
T |
|
| Q |
135 |
tccaactccacaagttttacacatcc |
160 |
Q |
| |
|
|| | | |||||| ||||||||||| |
|
|
| T |
31028106 |
tctatttgcacaagatttacacatcc |
31028131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 31526857 - 31527028
Alignment:
| Q |
33 |
tcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttagaagtccaagagatg |
132 |
Q |
| |
|
||||||||| | |||||||| | || || |||||| |||||||||||||| |||||| || |||||||||||||| ||| |||||| | || ||||| |
|
|
| T |
31526857 |
tcaagagaggtgagaccaaacaagtcattcggtatggttactagatttttgcaatcttccaaattcaagtaaacaagttttcttagaacactaatagatg |
31526956 |
T |
|
| Q |
133 |
gatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctg |
204 |
Q |
| |
|
|||| | || | ||||||||||||||||||| | ||||||| |||||||| |||| |||||| ||||||| |
|
|
| T |
31526957 |
gatctatctgctcaagttttacacatcctttgagatttagccgctcaagattagggatctctccgaaatctg |
31527028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 32 - 266
Target Start/End: Original strand, 31148740 - 31148974
Alignment:
| Q |
32 |
ttcaagagagctaagaccaaatatgttgttgggtatgcttactagatttttgtaatcttttaagttcaagtaaacaagcttttttagaagtccaagagat |
131 |
Q |
| |
|
|||||||||||| ||||||||||| || || ||||| ||| ||| |||||| ||||||| || |||| ||||||||||||| |||||| |||| |||| |
|
|
| T |
31148740 |
ttcaagagagctgagaccaaatatattttttggtattattattagttttttgcaatctttcaaattcaggtaaacaagctttcttagaaccccaatagat |
31148839 |
T |
|
| Q |
132 |
ggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctccaaaatctgttatcttttctagctctttggagttac |
231 |
Q |
| |
|
||| ||| | ||| ||||| |||||||||| ||| ||| |||||||| |||| ||||||||||| || |||||| ||| ||| |||| | |
|
|
| T |
31148840 |
ggacccatttgcaccagtttcacacatccttcaaaacttacacgctcaagatttgggacctctccaaaatttggcatctttcttagactttttgagtggc |
31148939 |
T |
|
| Q |
232 |
ttagatccaatgttctcaaattgggaagatactgt |
266 |
Q |
| |
|
|||||||||| ||||||||||| || | ||||||| |
|
|
| T |
31148940 |
ttagatccaaagttctcaaattcggcaaatactgt |
31148974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 473
Target Start/End: Original strand, 31157992 - 31158108
Alignment:
| Q |
357 |
aagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgttggca |
456 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||||||| | ||||| | | ||| ||||||||| ||||||| |||||| | ||||| || ||||| |
|
|
| T |
31157992 |
aagagaatttatagtaccttcttgtctttccatagttgtttgacgctgctatgcctcatgatcaattcaacaagttgattgggctgaaaacatgctggca |
31158091 |
T |
|
| Q |
457 |
aatactggcaaggatat |
473 |
Q |
| |
|
|||||| | |||||||| |
|
|
| T |
31158092 |
aatacttgaaaggatat |
31158108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 31032569 - 31032615
Alignment:
| Q |
35 |
aagagagctaagaccaaatatgttgttgggtatgcttactagatttt |
81 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31032569 |
aagagaggtgagaccaaatatgttgttgggtatgcttattagatttt |
31032615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 31484411 - 31484304
Alignment:
| Q |
96 |
ttcaagtaaacaagcttttttagaagtccaagagatggatccaactccacaagttttacacatcctttcaaatttagcttttcaagattcgggaactctc |
195 |
Q |
| |
|
|||||| |||||||||| ||| |||| | || | || |||||| ||||||||||||||||||||||| | |||| | |||||||| |||| ||||| |
|
|
| T |
31484411 |
ttcaagaaaacaagcttctttggaagacaaataaatagatccatctccacaagttttacacatccttcaaggtttaaccgctcaagatttgggacctctc |
31484312 |
T |
|
| Q |
196 |
caaaatct |
203 |
Q |
| |
|
|||||||| |
|
|
| T |
31484311 |
caaaatct |
31484304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 473
Target Start/End: Original strand, 31149112 - 31149234
Alignment:
| Q |
351 |
aataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttg |
450 |
Q |
| |
|
||||| |||||||| |||| ||||||||| | ||||| ||| ||||| | |||| | | ||||||||||||| ||||||| ||| || |||||||| |
|
|
| T |
31149112 |
aataaaaagagaatgtatagtaccttcttatctttccatagctgtttgacactgctatacctcaagatcaattcgacaagttgattaggcagaaaacttg |
31149211 |
T |
|
| Q |
451 |
ttggcaaatactggcaaggatat |
473 |
Q |
| |
|
||||||||||| | |||||||| |
|
|
| T |
31149212 |
atggcaaatacttgaaaggatat |
31149234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 473
Target Start/End: Complemental strand, 31503459 - 31503338
Alignment:
| Q |
352 |
ataataagagaatttatattaccttcttgtttttccgtagttgtttaatgctgcatttcttcaagatcaattctacaagttcattggggttaaaacttgt |
451 |
Q |
| |
|
||||| |||| ||||| | ||||||||||| || || || ||||| ||||||| ||||||||||||| || ||||||| ||| || | |||||||| |
|
|
| T |
31503459 |
ataattagaggatttagagtaccttcttgtcttcccataattgttcgatgctgctactcttcaagatcaactcaacaagttgatttggctgaaaacttga |
31503360 |
T |
|
| Q |
452 |
tggcaaatactggcaaggatat |
473 |
Q |
| |
|
|||||||||| | |||||||| |
|
|
| T |
31503359 |
cggcaaatacttgaaaggatat |
31503338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 31491114 - 31491066
Alignment:
| Q |
357 |
aagagaatttatattaccttcttgtttttccgtagttgtttaatgctgc |
405 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||||| | ||||||| |
|
|
| T |
31491114 |
aagagaatttatagtaccttcttgtctttccatagttgtgtgatgctgc |
31491066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 6785012 - 6784946
Alignment:
| Q |
96 |
ttcaagtaaacaagcttttttagaagtccaagagatggatccaactccacaagttttacacatcctt |
162 |
Q |
| |
|
|||||| |||||||||| |||| ||| |||| | || |||||||||||||||| |||||||||||| |
|
|
| T |
6785012 |
ttcaagaaaacaagcttctttacaagaccaatatattgatccaactccacaagagttacacatcctt |
6784946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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