View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4547-Insertion-3 (Length: 567)
Name: NF4547-Insertion-3
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547-Insertion-3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 7 - 567
Target Start/End: Complemental strand, 28119310 - 28118751
Alignment:
| Q |
7 |
aggagtttggatacattgctagccccaaacactttatgcacagctgcaaagtgtgttgttccatgctccgaatcgaagtatggagcaaaaacacaccctt |
106 |
Q |
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| T |
28119310 |
aggagtttggatacattgctagccccaaacactttatgcacagctgcaaagtgtgttgttccatgctccgaatcgaagtatggagcaaaaacacaccctt |
28119211 |
T |
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| Q |
107 |
gcacacacttcctcctcaaaaacttgcaagccccacaagggcttccactgcttccgccgccaccactgcttccgctgccactagagtttagactcatctc |
206 |
Q |
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| T |
28119210 |
gcacacacttcctcctcaaaaacttgcaagccccacaagggcttccactgcttccgccgccaccaccgcttccgctgccactagagtttagactcatctc |
28119111 |
T |
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| Q |
207 |
taaagggtaattaatatttttgtttttgttttaatgtctatagctatggnnnnnnnnnagatgtaataattaggtttnnnnnnnctagggtttgattaaa |
306 |
Q |
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| T |
28119110 |
taaagggtaattaatatttttgtttttgttttaatgtctatagctatggtttttttt-agatgtaataattaggtttaaaaaaactagggtttgattaaa |
28119012 |
T |
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| Q |
307 |
tttgtgagagtcatatgatctatgaaggaaaaattgaaaggaaagaattaaggtagtgtttgtaggaatatttggtggggttatatagctagtgatttaa |
406 |
Q |
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| T |
28119011 |
tttgtgagagtcatatgatctatgaaggaaaaattgaaaggaaagaattaaggtagtgtttgtaggaatatttggtggggttatatagctagtgatttaa |
28118912 |
T |
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| Q |
407 |
tgaggaaatttaagaaaaattctttaaagccacgcgaaggagcaaaggcttaacctaaacatttttgcttcttgcgtgaagaaaaacataagataaaaat |
506 |
Q |
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| T |
28118911 |
tgaggaaatttaagaaaaattctttaaagccacgcgaaggagcaaaggcttaacctaaacatttttgcttcttgcgtgaagaaaaacataagataaaaat |
28118812 |
T |
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| Q |
507 |
ttatataagattggttattggttatatataccttaaatgattcacttttcctcttttgtcc |
567 |
Q |
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| T |
28118811 |
ttatataagattggttattggttatatataccttaaatgattcacttttcctcttttgtcc |
28118751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 13270669 - 13270747
Alignment:
| Q |
70 |
tgctccgaatcgaagtatggagcaaaaacacacccttgcacacacttcctcctcaaaaacttgcaagccccacaagggc |
148 |
Q |
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| T |
13270669 |
tgctccgaatcgaagtaaggcgcaaaaatacatcccgggatacacttccttctcaaaaacttgcacgcgccacaagggc |
13270747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 13286916 - 13286790
Alignment:
| Q |
20 |
cattgctagccccaaacactttatgcacagctgcaaagtgtgttgttccatgctccgaatcgaagtatggagcaaaaacacacccttgcacacacttcct |
119 |
Q |
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|||| ||||| |||||||||||||| || |||||||| || ||||| || || ||||| || ||||| ||||| | || |||| |||||||| || |
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| T |
13286916 |
cattactagcaccaaacactttatgaactgctgcaaaatgaaccgttccttggtctgaatcaaaatatggtgcaaatatgcaaccttttacacactttct |
13286817 |
T |
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| Q |
120 |
cctcaaaaacttgcaagccccacaagg |
146 |
Q |
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| T |
13286816 |
cctcaaaaacttgcaagcaccacaagg |
13286790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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