View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4547-Insertion-4 (Length: 527)
Name: NF4547-Insertion-4
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547-Insertion-4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 37250139 - 37249617
Alignment:
| Q |
8 |
ttaacctcataattttgttaaaatatttggtgagccaccccttgcttttatcgtcaagactttttcacagttcaatagatatgttatttggtccaacttc |
107 |
Q |
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| T |
37250139 |
ttaacctcataattttgttaaaatatttggtgagccaccccttgcttttatcgtcaagactttttcatagttcaatagatatgttatttggtccaacttc |
37250040 |
T |
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| Q |
108 |
ctaatcattactcatccttttcaatgcttcttttactctttgtgtatttgaattcgatgatatgtataattttatcctcctatccaatgtgtaccatttt |
207 |
Q |
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| T |
37250039 |
ctaatcattactcatccttttcaatgcttcttttact-tttgtgtatttgaattcgatgatatgtataatttgatcctcctatccaatgtgtaccatttt |
37249941 |
T |
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| Q |
208 |
agagagcagtaagatctaatatccttcattacataagttgtgaacgtgattctttctaaagtaaaatgggattttggattgtgatccattcnnnnnnntt |
307 |
Q |
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| T |
37249940 |
aaagagcactaagatctcatatccttcattacataagttgtgaacgtgattctttctgaagtaaaatgggattttggattgtgatccattcaaaaaattt |
37249841 |
T |
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| Q |
308 |
gcaataaaacttctaaactgataacttttatttgattacttacttagtaagaaacaacatttaataactatagcaagtgtaaattggaaatttaaatgag |
407 |
Q |
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| T |
37249840 |
gcaataaaacttctaaactgataacttttatttgattacttacttagtaagaaacaacatttaataactatagcaagtgtaaattggaaatttaaatgag |
37249741 |
T |
|
| Q |
408 |
gcgagttaattagagaatcacacacataaagttatattggtttatccaatgta----actttagtccacacaatattgtgatattttccaccatgcactt |
503 |
Q |
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| T |
37249740 |
gcgagttaattagagaatcacacacataaagttatattggtttatccaatgtaggctactttagtccacacaatattgtgatattttccaccatgcactt |
37249641 |
T |
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| Q |
504 |
aagatttaatactatctctatgca |
527 |
Q |
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| T |
37249640 |
aagatttaatactatctctatgca |
37249617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 27451558 - 27451638
Alignment:
| Q |
56 |
tatcgtcaagactttttcacagttcaatagatatgttatttggtccaacttcctaatcattactcatccttttcaatgctt |
136 |
Q |
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||||| |||||||||| |||| ||| |||| |||||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
27451558 |
tatcgccaagacttttccacacttcgataggtatgttatccggcccaacttccttgccattactcatccttttcaatgctt |
27451638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 32629499 - 32629415
Alignment:
| Q |
56 |
tatcgtcaagactttttcacagttcaatagatatgttatttggtccaacttcctaatcattactcatccttttcaatgcttcttt |
140 |
Q |
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||||| |||||||||| |||| ||| |||| |||||| | || |||||| ||| | ||||||||||||||||||| |||||||| |
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| T |
32629499 |
tatcgccaagacttttccacacttcgataggtatgttgtccggcccaactgccttaccattactcatccttttcaacgcttcttt |
32629415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 32405887 - 32405934
Alignment:
| Q |
96 |
tggtccaacttcctaatcattactcatccttttcaatgcttcttttac |
143 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
32405887 |
tggtccaactgccttgccattactcatccttttcaatgcttcttttac |
32405934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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