View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4547-Insertion-5 (Length: 472)
Name: NF4547-Insertion-5
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 7 - 472
Target Start/End: Complemental strand, 39586933 - 39586468
Alignment:
| Q |
7 |
ataatctcccttgacgttctctcaacacaccgtttaaactcatttttacgtattagaaaaaacgaaatcatgaaactcatgcaagccctagctcgtggtt |
106 |
Q |
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| T |
39586933 |
ataatctcccttgacgttctctcaacacaccgtttaaactcatttttacgtattagaaaaaacgaaatcatgaaactcatgcaagccctagctcgtggtt |
39586834 |
T |
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| Q |
107 |
ctagttctagttctagcgacggttttgcgagagtggagttaaaaacaaagctttcggagatgacttttaacacgataatgagaatgatatctggaaagag |
206 |
Q |
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| T |
39586833 |
ctagttctagttctagcgacggttttgtgagagtggagttgaaaacaaagctttcggagatgacttttaacacgataatgagaatgatatctggaaagag |
39586734 |
T |
|
| Q |
207 |
atattatggtgaggattgtgatgtgagtgatgaagaagaagctaagggatttagggagatgattaaggagatggtatcgttgggtggttcgagtaatcct |
306 |
Q |
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| T |
39586733 |
atattatggtgaggattgtgatgtgagtgatgaagaagaagctaagggatttagggagatgattaaggagatggtatcgttgggtggttcgagtaatcct |
39586634 |
T |
|
| Q |
307 |
ggtgaatttgttgggattttgaggtggttcgattttggtggttatgaaaagaagttgaaaaggattgcaagaagatttgatgggtttttgcagggtttga |
406 |
Q |
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| T |
39586633 |
ggtgaatttgttgggattttgaggtggtttgattttggtggttatgaaaagaagttgaaaaggattgcaagaagatttgatgggtttttgcaaggtttga |
39586534 |
T |
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| Q |
407 |
ttgatgagcataggaggaagaaggagaaggggaataacatgattgatcatctcttgaacttgcaag |
472 |
Q |
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| T |
39586533 |
ttgatgagcataggaggaagaaggagaaggggaataacatgattgatcatctcttgaacttgcaag |
39586468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 38954399 - 38954439
Alignment:
| Q |
184 |
atgagaatgatatctggaaagagatattatggtgaggattg |
224 |
Q |
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| T |
38954399 |
atgagaatgatctctggaaagagatactatggtgatgattg |
38954439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 5884330 - 5884410
Alignment:
| Q |
158 |
tttcggagatgacttttaacacgataatgagaatgatatctggaaagagatattatggtgaggattgtgatgtgagtgatg |
238 |
Q |
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| T |
5884330 |
tttcggaaatgacatttaatactataatgagaatggtgtcggggaaaagatactatggaaatgattgtgatgtgagtgatg |
5884410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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