View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4547_high_1 (Length: 496)
Name: NF4547_high_1
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 2324362 - 2324829
Alignment:
| Q |
18 |
caagaagggcttacatctgtcaagccgatcgcgtcaaagtcattctggtggtgagataatgaactacatgagtgtagatgtgcagaggattacggatttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2324362 |
caagaagggcttacatctgtcaagccgatcgcgtcaaagtcattctggtggtgagataatgaactacatgagtgtagatgtgcagaggattacggatttc |
2324461 |
T |
|
| Q |
118 |
gtttggtatgtaaatgttatttggatgctgccgatacaaatttccttagctgttatcattttgcagacaaatcttggattaggttcattggctgcattag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2324462 |
gtttggtatgtaaatgttatttggatgctgccgatacaaatttccttagctgttatcattttgcagacaaatcttggattaggttcattggctgcattag |
2324561 |
T |
|
| Q |
218 |
ctgctacactagcagttatgactttgaacatacctttaacgaaaatacagaaaagataccaaaccaagatcatggatgcaaaagacaacagaatgaagac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2324562 |
ctgctacactagcagttatgactttgaacatacctttaacgaaaatacagaaaagataccaaaccaagatcatggatgcaaaagacaacagaatgaagac |
2324661 |
T |
|
| Q |
318 |
cacttcagaaattctcaaaaacatgaggactttgaaacttcaagcatgggatggtgagtttttccaaaggatagaatcattgagaagtgttgaatatggt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2324662 |
cacttcagaaattctcaaaaacatgaggactttgaaatttcaagcatgggattgtgagtttttccaaaggatagaatcattgagaagtgttgaatatggt |
2324761 |
T |
|
| Q |
418 |
tggttatcaaagtcattaagacaacaggcgttttcggcttttatcttctggggttcacctacattcat |
485 |
Q |
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| T |
2324762 |
tggttatcaaagtcattaagacaacaggctttttcggcttttatcttctggggttcacctacattcat |
2324829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 2300143 - 2300610
Alignment:
| Q |
18 |
caagaagggcttacatctgtcaagccgatcgcgtcaaagtcattctggtggtgagataatgaactacatgagtgtagatgtgcagaggattacggatttc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2300143 |
caagaagggcttacatctgtcaagccgatcgcgtcaaagtcattctggtggtgagataatgaactacatgagtgtagatgtgcagaggattacggatttc |
2300242 |
T |
|
| Q |
118 |
gtttggtatgtaaatgttatttggatgctgccgatacaaatttccttagctgttatcattttgcagacaaatcttggattaggttcattggctgcattag |
217 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2300243 |
gtttggtatgtaaacgttatttggatgctgccgatacaaatttccttagctgttatcattttgcagacaaatcttggattaggttcattggctgcattag |
2300342 |
T |
|
| Q |
218 |
ctgctacactagcagttatgactttgaacatacctttaacgaaaatacagaaaagataccaaaccaagatcatggatgcaaaagacaacagaatgaagac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2300343 |
ctgctacactagcagttatgactttgaacatacctttaacgaaaatacagaaaagataccaaaccaagatcatggatgcaaaagacaacagaatgaagac |
2300442 |
T |
|
| Q |
318 |
cacttcagaaattctcaaaaacatgaggactttgaaacttcaagcatgggatggtgagtttttccaaaggatagaatcattgagaagtgttgaatatggt |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2300443 |
cacttcagaaattctcaaaaacatgaggactttgaaatttcaagcatgggattgtgagtttttccaaaggatagaatcattgagaagtgttgaatatggt |
2300542 |
T |
|
| Q |
418 |
tggttatcaaagtcattaagacaacaggcgttttcggcttttatcttctggggttcacctacattcat |
485 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
2300543 |
tggttatcaaagtcattaagacaacaggctttttcggcttttatcttctggggttcacctacattcat |
2300610 |
T |
|
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