View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4547_high_8 (Length: 252)
Name: NF4547_high_8
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 52564351 - 52564115
Alignment:
| Q |
1 |
tttgtcatattattagatgtatatcatcaacttaattatctaagtctttcttattttaatcataagttgattttaaaataaatataacttgtatgtgcat |
100 |
Q |
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| T |
52564351 |
tttgtcatattattagatgtatatcatcaacttaattatctaagtctttcttattttaatcataagttgattttaaaataaatataacttgtatgtgcat |
52564252 |
T |
|
| Q |
101 |
atatttttagtctcctaaaattatcaatttagatttgcctacaccttaag---agaaaaacatgcttttcgtatacggcttcatgaacacactccgaaaa |
197 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
52564251 |
atatttttagtctcctaaaattatcaatttagacttgcctacaccttaagatcagataaacatgctttttgtagacggcttcatgaacacactccgaaaa |
52564152 |
T |
|
| Q |
198 |
caaaagagataaacacaatctcttgatggagttggta |
234 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||| |
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|
| T |
52564151 |
caaaagagataaacacaatttcttgatggagtcggta |
52564115 |
T |
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