View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4547_low_1 (Length: 1103)
Name: NF4547_low_1
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 242 - 743
Target Start/End: Original strand, 15871179 - 15871680
Alignment:
| Q |
242 |
ttgaatgcactaatacttgaaatttaactctttctcaattttccctatttacaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtg |
341 |
Q |
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||||||| ||||||||||||||||||||| ||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15871179 |
ttgaatgaactaatacttgaaatttaactttttctgaattttcactctttacaggcttcgtgaacttcatacccttaaaggacatgttgaatctgttgtg |
15871278 |
T |
|
| Q |
342 |
aagctgaaaggacttgacatagagactatgcaacaacattacactgtgtaatataagcaacacagacaaatgttgttgtagatagttaaggaaagaaaag |
441 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15871279 |
aagctgaaaggactggacatagagactatgcaacaacattacactgtgtaatataagcaacacagacaaatgttgttgtagatagttaaggaaagaaaag |
15871378 |
T |
|
| Q |
442 |
ataaattgccattaggtagggagagaaattctgtgatatatctctcccagtgttttactttattaatgcatttctagtaaacttttgatgcttgagacaa |
541 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15871379 |
ataaattgccattaggtagggagagaaattctgtgatatatctctcccagtgttttactttattaatgcatttctagtaaacttttgatgcttgagacaa |
15871478 |
T |
|
| Q |
542 |
agaagttttagtttcaatcaaatattatatggttctatatgcttttgagtccaccaatttctcaatttgtggttttcatttttattttatgcaaacatta |
641 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15871479 |
agaagttttagtttcaatcaaatattatatgcttctctatgcttttgagtccaccaatttctcaatttgtggttttcatttttattttatgcaaacatta |
15871578 |
T |
|
| Q |
642 |
ttgggaaacttgtgtgaataagcattatgaaaaatttcaacatggtctcaactcattctcatgttatttttgtcttttggaaacactatgacaagcaaat |
741 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15871579 |
ttgggaaacttgtgtgaataagcattatgaaaattttcaacatggtagcaactcattttcatgttatttttgtcttttgggaacactatgacaagcaaat |
15871678 |
T |
|
| Q |
742 |
ac |
743 |
Q |
| |
|
|| |
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|
| T |
15871679 |
ac |
15871680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 15870898 - 15871131
Alignment:
| Q |
17 |
actttcagcaccacaagaaacttctagtctcttcaatgacaagaacacttatagagaattgtctgagattgctgagcaggctaagcgacgcgctgaagtt |
116 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15870898 |
actttcagcaccagaagaaacttctagtctcttcaatgacaagaacacttatagagaattgtctgagattgctgagcaggctaagcgacgcgctgaagtt |
15870997 |
T |
|
| Q |
117 |
gctaggtaagcaataacaacatacctagattacgagattttcacgatgattattactttctatcgtctcgtacataagcaacaaaaatagttaatatcgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15870998 |
gctaggtaagcaataacaacatacctagattacgagattttcacgatgattattactttctatcgtctcgtacataagcaacaaaaatagttaatatcgt |
15871097 |
T |
|
| Q |
217 |
ttaattttcatgacgtagtataacattgaatgca |
250 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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| T |
15871098 |
ttaattttcatgacgtaatataacattgaatgca |
15871131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 755 - 1016
Target Start/End: Original strand, 15871728 - 15871987
Alignment:
| Q |
755 |
cgaccgataaagaattgattcataccttacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatccttattct |
854 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15871728 |
cgaccgataaagaattgattcatacctcacatggtcatggattcatcatcgcttcccgcgtaaggatataatttgtaggtaatctatgaatgtttattct |
15871827 |
T |
|
| Q |
855 |
gagtttttatgcctgcctagatgaacctccaggaccaaactcgcaaaaacnnnnnnnncttagaaaaagagcgtaagaaagtaatctttaattaagtgcc |
954 |
Q |
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||||||||||||||| | ||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||| || |
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| T |
15871828 |
gagtttttatgcctgtc-cgatgagcctccaggaccaaactcgcaaaaac-tttttttcttaaaaaaagagcataagaaagtaatctttaatcaagtacc |
15871925 |
T |
|
| Q |
955 |
tcttttgagctttgacgtttgtcttaactagcctctgggtctcaacttgcatacaattatac |
1016 |
Q |
| |
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||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
15871926 |
tcttttgagctttgatgtttgtcttagctagcctctgagtctcaacttgcatacaattatac |
15871987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 45196005 - 45195920
Alignment:
| Q |
303 |
gagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacactgt |
388 |
Q |
| |
|
|||||||| || || |||||||||||||| |||||||| || || || ||||||||||| ||||| || |||||||| |||||||| |
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| T |
45196005 |
gagcttcacacactgaaaggacatgttgagtctgttgtaaaactcaagggacttgacattgagacaatccaacaacactacactgt |
45195920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1035 - 1064
Target Start/End: Original strand, 15871999 - 15872028
Alignment:
| Q |
1035 |
ctacaaataagagtacaagaaagaaatata |
1064 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
15871999 |
ctacaaataagagtacaagaaagaaatata |
15872028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 53073875 - 53073812
Alignment:
| Q |
289 |
tttacaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaagg |
352 |
Q |
| |
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|||||||||||||||||||||| || || || ||||||||||||||||| |||||||||||||| |
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| T |
53073875 |
tttacaggcttcgtgagcttcacacactcaagggacatgttgaatctgtggtgaagctgaaagg |
53073812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 53074072 - 53073970
Alignment:
| Q |
26 |
accacaagaaacttctagtctcttcaatgacaagaacacttatagagaattgtctgagattgctgagcaggctaagcgacgcgctgaagttgctaggtaa |
125 |
Q |
| |
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||||| ||||| |||| || | |||||||| |||| || ||| |||||| |||| |||||||||||||| || ||| || | ||||||||||| |||||| |
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| T |
53074072 |
accaccagaaagttctggtattttcaatgagaagagcagttacagagaactgtccgagattgctgagcaagcgaagagaagagctgaagttgcaaggtaa |
53073973 |
T |
|
| Q |
126 |
gca |
128 |
Q |
| |
|
||| |
|
|
| T |
53073972 |
gca |
53073970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 385
Target Start/End: Complemental strand, 48434949 - 48434867
Alignment:
| Q |
303 |
gagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacac |
385 |
Q |
| |
|
||||| ||||| || || ||||||||||||||||| |||||| |||| || |||||||| || || || |||||||| ||||| |
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| T |
48434949 |
gagctccatacactcaagggacatgttgaatctgtggtgaagttgaagggtcttgacattgatacgattcaacaacactacac |
48434867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 292 - 388
Target Start/End: Original strand, 50278288 - 50278384
Alignment:
| Q |
292 |
acaggcttcgtgagcttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggacttgacatagagactatgcaacaacattacactgt |
388 |
Q |
| |
|
|||||||| | |||||||| || || || || || |||||||| || |||||||| || |||||||| || || ||||||||||||||||| ||||| |
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| T |
50278288 |
acaggcttagggagcttcacacactaaagggtcacgttgaatcagtcgtgaagcttaagggacttgatatcgacactatgcaacaacattatactgt |
50278384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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