View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4547_low_11 (Length: 250)
Name: NF4547_low_11
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 15807054 - 15807274
Alignment:
| Q |
20 |
acatctcctacaagtgtgcctcaagcaactaattaattatctttcctaagattgatgagtctgcaatttacaaaattgaaaggcatccaaattgaaaaac |
119 |
Q |
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| T |
15807054 |
acatctcctacaagtgtgcctcaagcaactaattaattatctttcctaagattgatgagtctgcaatttacaacattgaaaggcatccaaattaaaaaac |
15807153 |
T |
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| Q |
120 |
aaacaattaatattacctggatttggcagaggagatggagatcctgtttgattttcgtagaaattataatcatcaatcttcaacccacaactaggacaca |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807154 |
aaacaattaatattacctggatttggcaaaggagatggagatcctgtttgttgttcgtagaaattataatcatcaatcttcaacccacaactaggacaca |
15807253 |
T |
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| Q |
220 |
aaactacccatccaacctttg |
240 |
Q |
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| T |
15807254 |
aaactacccatccaacctttg |
15807274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 15793744 - 15793856
Alignment:
| Q |
128 |
aatattacctggatttggcagaggagatggagatcctgtttgattttcgtagaaattataatcatcaatcttcaacccacaactaggacacaaaactacc |
227 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| |
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| T |
15793744 |
aatattacctggatttggcaaaggagaaggagatcctgtttgttgtccgtagaaattataatcatcaatcttcatcccacaactaggagacacaactacc |
15793843 |
T |
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| Q |
228 |
catccaacctttg |
240 |
Q |
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| T |
15793844 |
catccaacctttg |
15793856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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