View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4547_low_14 (Length: 243)
Name: NF4547_low_14
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 33901550 - 33901766
Alignment:
| Q |
6 |
tttttgtaggtgattgtgttatctctttcaacatggatatcatggtttgtagctagaaaattgcattcatacccaaaatcatggataccatcttctatga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33901550 |
tttttgtaggtgattgtgttatctctttcaacatggatatcatggtttgtagctggaaaattgcattcatacccaaaatcatggataccatcttctatga |
33901649 |
T |
|
| Q |
106 |
atagttttgagcttgcacttcagtttggaatttcagtcatggtcatagcttgtccttgtgctctaggcctagccactcctacagcggtcatggttggtac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33901650 |
atagttttgagcttgcacttcagtttggaatttcagtcatggtcatagcttgtccttgtgctctaggcctagccactcctacagcggtcatggttggtac |
33901749 |
T |
|
| Q |
206 |
cgtagttggtgcaactc |
222 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
33901750 |
cggagttggtgcaactc |
33901766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 33919070 - 33919288
Alignment:
| Q |
2 |
cctgtttttgtaggtgattgtgttatctctttcaacatggatatcatggtttgtagctagaaaattgcattcatacccaaaatcatggataccatcttct |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33919070 |
cctgtttttgtaggtgattgtgttatctctttcaacatggatatcatggtttgtagctggaaaattgcattcatacccaaaatcatggataccatcttct |
33919169 |
T |
|
| Q |
102 |
atgaatagttttgagcttgcacttcagtttggaatttcagtcatggtcatagcttgtccttgtgctctaggcctagccactcctacagcggtcatggttg |
201 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
33919170 |
atgaataatttcgagcttgcacttcagtttggaatttcagtcatggtcatagcttgtccttgtgctctaggcct--ctactcctacagcggtcatggttg |
33919267 |
T |
|
| Q |
202 |
gtaccgtagttggtgcaactc |
222 |
Q |
| |
|
|||| | |||||||||||||| |
|
|
| T |
33919268 |
gtactggagttggtgcaactc |
33919288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 218
Target Start/End: Complemental strand, 2781194 - 2781051
Alignment:
| Q |
75 |
tacccaaaatcatggataccatcttctatgaatagttttgagcttgcacttcagtttggaatttcagtcatggtcatagcttgtccttgtgctctaggcc |
174 |
Q |
| |
|
||||| ||||| ||||| || ||||| ||| | || ||||||||||| || ||||||||||| || |||||||| || ||||| ||||||||| | || |
|
|
| T |
2781194 |
tacccgaaatcttggattccgtcttccatggacagctttgagcttgctctgcagtttggaatatctgtcatggttattgcttgcccttgtgctttgggtt |
2781095 |
T |
|
| Q |
175 |
tagccactcctacagcggtcatggttggtaccgtagttggtgca |
218 |
Q |
| |
|
||||||| ||||| || || |||||||| || | |||||||||| |
|
|
| T |
2781094 |
tagccacacctaccgctgttatggttggaactggagttggtgca |
2781051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3088 times since January 2019
Visitors: 8656