View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4547_low_17 (Length: 204)
Name: NF4547_low_17
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547_low_17 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold1652 (2 HSPs) |
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| [»] scaffold1176 (2 HSPs) |
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| [»] scaffold1801 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 14248349 - 14248161
Alignment:
| Q |
16 |
ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa |
115 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248349 |
ttcaccgtctgccatcaactctccatcatctcctcctcaagctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa |
14248250 |
T |
|
| Q |
116 |
gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgcttt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14248249 |
gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgcttt |
14248161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 14316884 - 14316699
Alignment:
| Q |
16 |
ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa |
115 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || || |||||||| |||||||||||||||| |||||| |
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| T |
14316884 |
ttcaccgtctgccatcaactctccatcatctcctcctcaagcttcccccgcagccactccggccatcactccatcatcgatctctacccctccttctaaa |
14316785 |
T |
|
| Q |
116 |
gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgcttt |
204 |
Q |
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||||||||||||||||| || || ||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |
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| T |
14316784 |
gcaccatcaacgtccacgaa---cgacgccgctttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgcttt |
14316699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 14254153 - 14253971
Alignment:
| Q |
16 |
ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa |
115 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||| | |||| || ||||| |||||||| |||||||||||| ||||||||| ||||||||||||| |
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| T |
14254153 |
ttcaccgtctgccatcaactctccaccatctcctc---aagcttcacctgcagctactcctgctattactccatcgtcgatctctatccctccatctaaa |
14254057 |
T |
|
| Q |
116 |
gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgcttt |
204 |
Q |
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| |||||||||||||||||| || ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| |
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| T |
14254056 |
gtaccatcaacgtccacaaa---cgacgccgctttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgcttt |
14253971 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 130; Significance: 1e-67; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 3405 - 3228
Alignment:
| Q |
16 |
ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa |
115 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3405 |
ttcaccgtctgccatcaactctccaccatctcctcctcatgcttccccagcagccgctcctgccattactccatcggcgatctctacccctccatctaaa |
3306 |
T |
|
| Q |
116 |
gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttc |
193 |
Q |
| |
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||||||||||| | ||||||||| | | |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3305 |
gcaccatcaacattcacaaacgctggcaccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttc |
3228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 3536 - 3483
Alignment:
| Q |
68 |
gccactcctgcaattactccatcggcgatctctacccctccatctaaagcacca |
121 |
Q |
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|
||||||||||| | ||||||||| |||||||||| ||||||||| |||||||| |
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| T |
3536 |
gccactcctgctgtgactccatcgtcgatctctactcctccatctcaagcacca |
3483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 467 - 652
Alignment:
| Q |
16 |
ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa |
115 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| | |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
467 |
ttcaccgtctgccatcaactctccaccatctcctc---aagcttcccccgcagccactcctgctattactccatcggcgatctctaccccaccatctaaa |
563 |
T |
|
| Q |
116 |
gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgcttt |
204 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
564 |
gcaccatcaacgtccacaaacgctgccaccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgcttt |
652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 277 - 316
Alignment:
| Q |
84 |
ctccatcggcgatctctacccctccatctaaagcaccatc |
123 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |
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| T |
277 |
ctccatcgtcgatctctacccctccatctcaagcaccatc |
316 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 48 - 204
Target Start/End: Original strand, 277 - 433
Alignment:
| Q |
48 |
ctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgc |
147 |
Q |
| |
|
||||||| |||| |||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
277 |
ctcctcaagcttcccccgcagccacccctgctattactccatcgtccatctctacccctccatctaaagcaccatcaacgtccacaaacgacgccgccgc |
376 |
T |
|
| Q |
148 |
tttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgcttt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
377 |
tttgaacagatttacagttgccggatctactgctgtcgtggttttcattgctgcttt |
433 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 1365 - 1478
Alignment:
| Q |
16 |
ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctcta-cccctccatctaa |
114 |
Q |
| |
|
||||| || ||||||||||| |||| |||||||||||||||||| ||||||| | |||| || | |||| ||||| | ||||||| ||||||||||||| |
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|
| T |
1365 |
ttcaccgtgtgccatcaactgtccaccatctcctcctcatgcttcccccgcaacagctccggctaatact-catcgtcaatctctaccccctccatctaa |
1463 |
T |
|
| Q |
115 |
agcaccatcaacgtc |
129 |
Q |
| |
|
||||| ||||||||| |
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|
| T |
1464 |
agcacaatcaacgtc |
1478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 132 - 311
Alignment:
| Q |
16 |
ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa |
115 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||| || ||||| ||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
132 |
ttcaccgtctgccatcaactctccacaatctcctcctcatgcttcgccagcagctgctcctgccattactccatcgtcgatctctacccctccatctaaa |
231 |
T |
|
| Q |
116 |
gcaccatca---------acgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgt |
186 |
Q |
| |
|
||| ||||| || ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
232 |
gcatcatcaacatcacagacatccacaaacgctgctgccgctttgaacagatttacagttgccggatctgctgctgtcgt |
311 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 37245021 - 37244896
Alignment:
| Q |
72 |
ctcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccgg |
171 |
Q |
| |
|
||||||| ||||||||| || | ||||||||||||||||||||| |||||||||| |||||||| || ||||||||| |||||||| || |||||||| |
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|
| T |
37245021 |
ctcctgctattactccaacgtctatctctacccctccatctaaatcaccatcaacatccacaaa---cggcgccgctttcaacagattcactgttgccgg |
37244925 |
T |
|
| Q |
172 |
atctactgctgtcgtggttttcgttgctg |
200 |
Q |
| |
|
|||| ||||||| |||||||||| ||||| |
|
|
| T |
37244924 |
atctgctgctgttgtggttttcgctgctg |
37244896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 37242033 - 37241923
Alignment:
| Q |
16 |
ttcactgtctgccatcaactctccatcatctcctcctcat---gctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatct |
112 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||||| | || | ||| || ||| ||||||| |||||||||||| | |||||||| |||||| || |
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|
| T |
37242033 |
ttcaccgtccgccatcaactctccaccatctcctcctcctcacgcctcccctgctgccgctcctgctattactccatcgtcaatctctactcctccaact |
37241934 |
T |
|
| Q |
113 |
aaagcaccatc |
123 |
Q |
| |
|
||||||||||| |
|
|
| T |
37241933 |
aaagcaccatc |
37241923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 37253011 - 37252960
Alignment:
| Q |
143 |
gccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcg |
194 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
37253011 |
gccgctttgaacagatttaccgttgccggatctgctgctgtagtggttttcg |
37252960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 37241927 - 37241876
Alignment:
| Q |
86 |
ccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacg |
137 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||||||| ||||||||| |
|
|
| T |
37241927 |
ccatcgtcgatctctactcctccaactaaagcaccatcaacgcccacaaacg |
37241876 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 37232766 - 37232704
Alignment:
| Q |
142 |
cgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgcttt |
204 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||| ||||||| ||| |||||| ||| ||||| |
|
|
| T |
37232766 |
cgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgcttt |
37232704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 37257141 - 37257075
Alignment:
| Q |
138 |
ccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgcttt |
204 |
Q |
| |
|
||||||||||||| |||||||| || ||||| |||||| ||||||| ||||||||| |||||||| |
|
|
| T |
37257141 |
ccgccgccgcttttaacagattcaccgttgctggatctgctgctgttatggttttcgccgctgcttt |
37257075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 37245169 - 37245128
Alignment:
| Q |
83 |
actccatcggcgatctctacccctccatctaaagcaccatca |
124 |
Q |
| |
|
||||||||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
37245169 |
actccatcgtcgatctctactcctccatctcaagcaccatca |
37245128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 37242163 - 37242111
Alignment:
| Q |
72 |
ctcctgcaattactccatcggcgatctctacccctccatctaaagcaccatca |
124 |
Q |
| |
|
|||||||| ||||||||| | ||||||| || ||||||||| ||||||||||| |
|
|
| T |
37242163 |
ctcctgcagttactccattgtcgatctcaactcctccatctcaagcaccatca |
37242111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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