View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4547_low_3 (Length: 456)
Name: NF4547_low_3
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 205 - 446
Target Start/End: Complemental strand, 30477021 - 30476776
Alignment:
| Q |
205 |
atcgtaagagacaaacagtctcaaattttttgttgcagactaaagtggatcttgactaagaaacaacatgcaccattacattatcacctgtattgtatat |
304 |
Q |
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| T |
30477021 |
atcgtaagagacaaacagtctcaaattttttgttgcagactaaagtggatcttgactaagaaacaacatgcaccattacattatcacctgtattatatat |
30476922 |
T |
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| Q |
305 |
ttacatatttaactttcagatccgtttcaatacttacgacagtatttgaaactcattattgaccaacactctat----tattatacaacaatatgagatt |
400 |
Q |
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| T |
30476921 |
ttacatatttaactttcagatccgtttcaatacctacgacagtatttgaaacccattattgaccaacactctattatatattatacaacaatatgagatt |
30476822 |
T |
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| Q |
401 |
tttattttacattatgagcattatgttgccactttacgtagaataa |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30476821 |
tttattttacattatgagcattatgttgccactttacgtagaataa |
30476776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Complemental strand, 30477115 - 30477084
Alignment:
| Q |
108 |
gctatattttcagttaggaactaaagtcttcc |
139 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30477115 |
gctatattttcagttaggaactaaagtcttcc |
30477084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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