View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4547_low_5 (Length: 375)
Name: NF4547_low_5
Description: NF4547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4547_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 35575319 - 35575465
Alignment:
| Q |
5 |
atcattaaacaacacagccaaacccagaagactagcttctataatcatgttttaaatgtcaccaaacactacaatacattttcattcatctcacatgatt |
104 |
Q |
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| T |
35575319 |
atcattaaacaacacagccaaacccagaagactagcttctataatcatgttttaaatgtcaccaaacactacaatacattttcattcatctcacatgatt |
35575418 |
T |
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| Q |
105 |
ccaaaaacctttatgatagaagtcaaccattaccaaattccatcagc |
151 |
Q |
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| T |
35575419 |
ccaaaaacctttatgatagaagtcaaccattaccaaattccatcagc |
35575465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 202 - 360
Target Start/End: Original strand, 35575516 - 35575684
Alignment:
| Q |
202 |
tcagaaaatttacttatttactcgcatttaaaggaaaaccaaatacacatcaaagta-----ggaagacaagaagcaacaaatctttgcagcacacaaaa |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
35575516 |
tcagaaaatttacttatttactcgcatttaaaggaaaaccaaatacacatcaaagcaaataaggaagacaagaagcaacaaatctttgcagcacacaaaa |
35575615 |
T |
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| Q |
297 |
agtttaaaatacaacaagattttagttcttcattattaactacacac-----aaaaagcaaagcatatt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
35575616 |
agtttaaaatacaacaagattttagttcttcattattaactacatacatgcaaaaaagcaaagcatatt |
35575684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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