View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4548-Insertion-1 (Length: 1000)

Name: NF4548-Insertion-1
Description: NF4548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4548-Insertion-1
NF4548-Insertion-1
[»] chr7 (4 HSPs)
chr7 (6-654)||(42072229-42072891)
chr7 (780-988)||(42071169-42071386)
chr7 (646-715)||(42071451-42071520)
chr7 (209-254)||(33887896-33887941)
[»] chr8 (2 HSPs)
chr8 (213-273)||(20279580-20279640)
chr8 (213-273)||(21066207-21066267)
[»] chr1 (2 HSPs)
chr1 (213-272)||(44442271-44442330)
chr1 (210-263)||(8365521-8365574)
[»] chr4 (3 HSPs)
chr4 (212-272)||(4394928-4394988)
chr4 (213-271)||(39274982-39275040)
chr4 (213-271)||(50086435-50086493)
[»] chr6 (1 HSPs)
chr6 (210-264)||(1841001-1841055)
[»] chr5 (2 HSPs)
chr5 (213-250)||(2816199-2816236)
chr5 (205-254)||(42265449-42265498)


Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 6 - 654
Target Start/End: Complemental strand, 42072891 - 42072229
Alignment:
Q  6 caaatacatcctaaataaaaaa-caaataatttgaaataatcggttgggcgtattgtgtatataccaattctatgtttgaaggtcaatgtgtacctacgt 104  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42072891 caaatacatcctaaataaaaaaacaaataatttgaaataatcggcagggcgtattgtgtatgtaccaattctatgtttgaaggtcaatgtgtacctacgt 42072792  T
Q  105 atgaaatcgaaagaagaaaatgatgtactaacatttttcaaaaagatagatcctgtccctacgattctaatttatgtaaaggtattgccaacaggtataa 204  Q
    ||||||||||||||||||||||||||| ||   ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||    
T  42072791 atgaaatcgaaagaagaaaatgatgtaata---tttttcaaaaagatagatcatgtccctacgattctaatttatgtaaaggtgttgccaacgggtataa 42072695  T
Q  205 aataaaataattattcttttaagaaatcaaatatttcaattttcaatgcaataaatacacgtattttttatagtacttactacttgtgcttatttaaaag 304  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42072694 aataaaataattattcttttaagaaattaaatattttaattttcaatgcaataaatacacgtattttttatagtacttactacttgtgcttatttaaaag 42072595  T
Q  305 tgtgttagcattttttcctttatataagttgccttacacctcacgtctacattttgattcttgttaaggaaatgcttctaaaaacttaatactttattgt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42072594 tgtgttagcattttttcctttatataagttgccttacacctcacgtctacattttgattcttgttaaggaaatgcttctaaaaacttaatactttattgt 42072495  T
Q  405 gatgctctgtactcgtttgtttgtttgtttcttatgaccacttcacgtcaaagcgtttacctaaagtttgtgttttctttcccgttcattcaaccg---- 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||        
T  42072494 gatgctctgtactcgtttgtttgtttgtttcttatgaccacttcacgtcaaagcgtttacctaaagtttgtgttttctttcccgttcattaaaccgttaa 42072395  T
Q  501 ------------ttaatctcttctgttttgatttgtaaataacgttatagtgcaggcaaggaagtatttcattttgtttgtgacaaagcaaattgatgct 588  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42072394 atgagtcgtgacttaatctcttctgttttgatttgtaaataacgttatagtgcaggcaaggaagtatttcattttgtttgtgacaaagcaaattgatgct 42072295  T
Q  589 tttagtttcagagttcaatacatttggaaatttaatgtgccgcttgagtattatgtgacccttgag 654  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42072294 tttagtttcagagttcaatgcatttggaaatttaatgtgccgcttgagtattatgtgacccttgag 42072229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 6e-83
Query Start/End: Original strand, 780 - 988
Target Start/End: Complemental strand, 42071386 - 42071169
Alignment:
Q  780 tcacatcaactattataattttgca--------ataaacatgatgagcttaatttaaatagaaatggaacatcatatactagtattctaatctttatcaa 871  Q
    |||||||||||||||||||||||||        ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42071386 tcacatcaactattataattttgcattaaaataataaacaagatgaccttaatttaaatagaaatggaacatcatatactagtattctaatctttatcaa 42071287  T
Q  872 gtatgggtctaagaacatttcacccttacatccttcatgcttgcagggtgtggattatcatagaatctataccaaacataaagatagct-aaaaagcctg 970  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||     
T  42071286 gtatgggtctaagaacatttcacccttacatccttcatgcttgcaggttgtggattatcatagaatctataccaaccataaatatagctcaaaaagcctt 42071187  T
Q  971 tgggatattcttatttgg 988  Q
    ||||||||||||||||||    
T  42071186 tgggatattcttatttgg 42071169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 646 - 715
Target Start/End: Complemental strand, 42071520 - 42071451
Alignment:
Q  646 acccttgagcaaatctcatgtgtatgtaaacgcataacaaaaacccacatcaactattgtgattttgcgt 715  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42071520 acccttaagcaaatctcatgtgtatgtaaacgcataacaaaaacccacatcaactattgtgattttgcgt 42071451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 33887941 - 33887896
Alignment:
Q  209 aaataattattcttttaagaaatcaaatatttcaattttcaatgca 254  Q
    ||||||||||||||| || || ||||||||||||||||||||||||    
T  33887941 aaataattattctttaaaaaagtcaaatatttcaattttcaatgca 33887896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 20279640 - 20279580
Alignment:
Q  213 aattattcttttaagaaatcaaatatttcaattttcaatgcaataaatacacgtatttttt 273  Q
    ||||||||||| || || ||||||||||||||||||||| || |||||||||| |||||||    
T  20279640 aattattctttcaaaaagtcaaatatttcaattttcaatacattaaatacacgcatttttt 20279580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 21066267 - 21066207
Alignment:
Q  213 aattattcttttaagaaatcaaatatttcaattttcaatgcaataaatacacgtatttttt 273  Q
    ||||||||||| || || ||||||||||||||||||||| || |||||||||| |||||||    
T  21066267 aattattctttcaaaaagtcaaatatttcaattttcaatacattaaatacacgcatttttt 21066207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 44442271 - 44442330
Alignment:
Q  213 aattattcttttaagaaatcaaatatttcaattttcaatgcaataaatacacgtattttt 272  Q
    ||||||||||| || || ||||||||||||||||||||| || ||||||||| |||||||    
T  44442271 aattattctttaaaaaagtcaaatatttcaattttcaatacattaaatacacatattttt 44442330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 8365521 - 8365574
Alignment:
Q  210 aataattattcttttaagaaatcaaatatttcaattttcaatgcaataaataca 263  Q
    ||||||||||||||||| ||||||| |||| |||| ||||||||| | ||||||    
T  8365521 aataattattcttttaaaaaatcaactattacaatcttcaatgcattcaataca 8365574  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 4394928 - 4394988
Alignment:
Q  212 taattattcttttaagaaatcaaatatttcaattttcaatgcaataaatacacgtattttt 272  Q
    |||||||||||| || ||||||||||||| |||||| ||| || | |||||||||||||||    
T  4394928 taattattctttaaaaaaatcaaatattttaatttttaatacattgaatacacgtattttt 4394988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 39274982 - 39275040
Alignment:
Q  213 aattattcttttaagaaatcaaatatttcaattttcaatgcaataaatacacgtatttt 271  Q
    ||||||| |||||| ||||||||||||||||||| ||||||| | |||| ||| |||||    
T  39274982 aattatttttttaaaaaatcaaatatttcaatttccaatgcattgaatagacgcatttt 39275040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 50086493 - 50086435
Alignment:
Q  213 aattattcttttaagaaatcaaatatttcaattttcaatgcaataaatacacgtatttt 271  Q
    ||||||||||| || |||||||||||||  |||||||||||| | ||||||| ||||||    
T  50086493 aattattctttaaaaaaatcaaatattttgattttcaatgcattgaatacacatatttt 50086435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 1841001 - 1841055
Alignment:
Q  210 aataattattcttttaagaaatcaaatatttcaattttcaatgcaataaatacac 264  Q
    ||||||||||||||||| ||||||| |||| |||||| ||||||| | |||||||    
T  1841001 aataattattcttttaaaaaatcaactattacaatttccaatgcattcaatacac 1841055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 2816199 - 2816236
Alignment:
Q  213 aattattcttttaagaaatcaaatatttcaattttcaa 250  Q
    ||||||||||| || |||||||||||||||||||||||    
T  2816199 aattattctttaaaaaaatcaaatatttcaattttcaa 2816236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 42265449 - 42265498
Alignment:
Q  205 aataaaataattattcttttaagaaatcaaatatttcaattttcaatgca 254  Q
    ||||||| ||||||||||| || || ||||| ||||||||||||||||||    
T  42265449 aataaaaaaattattctttaaaaaagtcaaaaatttcaattttcaatgca 42265498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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