View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4548_low_2 (Length: 266)
Name: NF4548_low_2
Description: NF4548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4548_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 594022 - 594271
Alignment:
| Q |
1 |
caagacacgaatgctgaccaatcataatcaataaactaatgtaaaagaaatgatataattcaatataagcgcatgtgtctggtggttgacgtgtcagaca |
100 |
Q |
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| T |
594022 |
caagacacgaatgctgaccaatcaaaatcaataaaataatgtaaaagaaatgatataattcaatataagtgcatgtgtctggtggttgacgttttagaca |
594121 |
T |
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| Q |
101 |
cacgacatgtcttcgattagaagtgtcattgcacatagtaaatagtaaatcaataacaattaaccagattagaagtttcatttaaaaatattgggggtag |
200 |
Q |
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| T |
594122 |
cacgacatgtcttcgattagaagtgtcattgcacatagtaaatagtaaatcaataacacttaaccagattagaagtttcatttaaaaatattgggggtag |
594221 |
T |
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| Q |
201 |
aatttgagaggagaaacaagtcttggtgacgactaacattgtcaccaaac |
250 |
Q |
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| T |
594222 |
aatttgagaggagaaacaagtcttggtgacgactaacattgtcaccaaac |
594271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 578402 - 578325
Alignment:
| Q |
4 |
gacacgaatgctgaccaatcataatcaataaactaatgtaaaagaaatgatataattcaatataagcgcatgtgtctg |
81 |
Q |
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| T |
578402 |
gacacgaatgctgaccaatcaaaatcaagaaaataatgtaaaagaaatgatataattcaatataatcgcatgtgtctg |
578325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 578308 - 578261
Alignment:
| Q |
122 |
agtgtcattgcacatagtaaatagtaaatcaataacaattaaccagat |
169 |
Q |
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| T |
578308 |
agtgtcattgcacatagtaaatagtaaatcaataacaattaaccagat |
578261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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