View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4548_low_3 (Length: 248)
Name: NF4548_low_3
Description: NF4548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4548_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 34343065 - 34343287
Alignment:
| Q |
18 |
cacatgtttggttttctaaaatccatggctcttaaatgggctattcaactaaacattccagatataatatacaaccatggaaaacctattaccctttctg |
117 |
Q |
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| T |
34343065 |
cacatgtttggttttctaaaatccatggctcttaaatgggctattcaactaaacattccagacataatctacaaccatggaaaacctattactctctctg |
34343164 |
T |
|
| Q |
118 |
acttagtttcaaccctacaagttccactatctaaacaaagtcttgtggaaagactcatgcgttttctagcacacaatggaatctttgtaatccatgagaa |
217 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34343165 |
acttagtttcaactctacaagttccaatatctaaacaaagtcttgtggaaagactcatgcgttttctagcacacaatggaatatttgtaatccatgagaa |
34343264 |
T |
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| Q |
218 |
aggtgaaaatgatgatgatgatg |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
34343265 |
aggtgaaaatgatgatgatgatg |
34343287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 34330478 - 34330682
Alignment:
| Q |
32 |
tctaaaatccatggctcttaaatgggctattcaactaaacattccagatataatatacaaccatggaaaacctattaccctttctgacttagtttcaacc |
131 |
Q |
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||||||| ||||| |||| ||||| ||| ||||||||||||||||||| |||||||| |||||||||||||| ||||| || |||||||||||||||| |
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| T |
34330478 |
tctaaaacccatgtctctcaaatgtgctgttcaactaaacattccagaaataatatataaccatggaaaacccattactctccctgacttagtttcaact |
34330577 |
T |
|
| Q |
132 |
ctacaagttccactatctaaacaaagtcttgtggaaagactcatgcgttttctagcacacaatggaatctttgtaatccatgagaaaggtgaaaatgatg |
231 |
Q |
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||| ||||||||||| |||| |||||||| ||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||| ||| ||||| |
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| T |
34330578 |
ctaaaagttccactagctaagtctagtcttgtcaaaagactcatgcgatttctagcacacattggaatctttgcaatccatgggaaaggagaagatgatc |
34330677 |
T |
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| Q |
232 |
atgat |
236 |
Q |
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||||| |
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| T |
34330678 |
atgat |
34330682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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