View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4558-Insertion-2 (Length: 1056)

Name: NF4558-Insertion-2
Description: NF4558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4558-Insertion-2
NF4558-Insertion-2
[»] chr3 (19 HSPs)
chr3 (244-592)||(38792128-38792478)
chr3 (687-1038)||(38791681-38792033)
chr3 (687-1000)||(407448-407767)
chr3 (687-1000)||(416175-416494)
chr3 (8-163)||(38792559-38792715)
chr3 (8-163)||(415592-415748)
chr3 (8-163)||(408194-408350)
chr3 (82-163)||(49962412-49962493)
chr3 (436-495)||(407932-407991)
chr3 (436-495)||(415951-416010)
chr3 (82-161)||(6458040-6458119)
chr3 (82-161)||(6758729-6758808)
chr3 (247-405)||(6758850-6759010)
chr3 (247-405)||(6457838-6457998)
chr3 (247-388)||(49962533-49962675)
chr3 (791-847)||(26305591-26305647)
chr3 (948-991)||(49963147-49963190)
chr3 (448-486)||(6457721-6457759)
chr3 (436-486)||(49962756-49962806)
[»] chr6 (6 HSPs)
chr6 (687-1006)||(24183925-24184250)
chr6 (8-163)||(24184676-24184832)
chr6 (82-163)||(20786751-20786832)
chr6 (855-993)||(20786105-20786244)
chr6 (436-495)||(24184414-24184473)
chr6 (105-163)||(8532254-8532312)
[»] chr1 (7 HSPs)
chr1 (687-1000)||(24345758-24346077)
chr1 (687-1000)||(24358030-24358349)
chr1 (8-163)||(24357447-24357603)
chr1 (8-163)||(24345069-24345225)
chr1 (247-363)||(24345310-24345426)
chr1 (436-495)||(24357806-24357865)
chr1 (436-495)||(24345535-24345592)
[»] chr2 (6 HSPs)
chr2 (82-163)||(15047300-15047381)
chr2 (82-163)||(38176500-38176581)
chr2 (855-993)||(15046547-15046686)
chr2 (247-388)||(38176318-38176460)
chr2 (962-991)||(15229643-15229672)
chr2 (930-991)||(38175789-38175850)
[»] chr7 (2 HSPs)
chr7 (863-1006)||(27980060-27980208)
chr7 (82-161)||(39676732-39676811)
[»] chr5 (2 HSPs)
chr5 (82-161)||(42632882-42632961)
chr5 (247-362)||(42632725-42632840)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 244 - 592
Target Start/End: Complemental strand, 38792478 - 38792128
Alignment:
Q  244 atcatgaacataacttattaagtatgtattctttttaggctccttatttttctcatgtcataaaccataatgttgtttgttctgacctattacaggtgtt 343  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38792478 atcatgaacataacttattaagtatgtattcttttcaggctccttatttttctcatgtcataaaccataatgttgcttgttctgacctattacaggtgtt 38792379  T
Q  344 ggtttgaagttttcttattgatggaaatacaacatgtt-gttttttactatgcgggaatacaacctctttgtctctctttgtaggatatgaaaatcaaca 442  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  38792378 ggtttgaagttttcttattgatggaaatacaacatgttggttttttactatgcgggaatacaacctctttacctctctttgtaggatatgaaaatcaaca 38792279  T
Q  443 taatcatcatagagacacaa--gttgaatgatccagacatcaaaagccaagattacattgtcgttacgatgtttttagtttgaactgttgtctgattttc 540  Q
     ||||||||| | |    ||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38792278 caatcatcattg-gtttgaactgttgaatgatccagccatcaaaagccaagattacattgtcgttacgatgtttttagtttgaactgttgtctggttttc 38792180  T
Q  541 tgcagtcacgacatgagggtctgcatgattggttgttccggtgatgattggc 592  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38792179 tgcagtcacgacatgagagtctgcatgattggttgttccggtgatgattggc 38792128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 687 - 1038
Target Start/End: Complemental strand, 38792033 - 38791681
Alignment:
Q  687 catcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtttaaga 786  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38792033 catcggtgcgtggaggcttgtttgttttgatttgtttgtaatctctagccttttgtactccttgtgctaggctttattgaatgaattaagttgtttaaga 38791934  T
Q  787 aaaaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatacaac 886  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||       |||||||||||||||||| |||||||||||||    
T  38791933 aaaaactacttttgcaacttcttagctttattttgtgttcta-ttttaatatttttatttgaaaaatatatcatgttattgatacaaaaagaaatacaac 38791835  T
Q  887 ttaagaatatgaaaacttgaagcacacaaattgatgttcgtgctttcattcattcacatgcataacatagacattagtaatattacattacatggatagt 986  Q
    |||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38791834 ttaaaaacatgaaaacttgaagcacacaaattgatgttcctgctttcattcattcacatgtataacatagacattagtaatattacattacatggatagt 38791735  T
Q  987 cttaacacatactttctaaa--gcaaaggctcgccgttagttttcctctttttc 1038  Q
    ||||||||||||||||||||   ||||||||| |||||||||||||||||||||    
T  38791734 cttaacacatactttctaaaagccaaaggctcaccgttagttttcctctttttc 38791681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 687 - 1000
Target Start/End: Complemental strand, 407767 - 407448
Alignment:
Q  687 catcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtt-taag 785  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||   ||| |||     
T  407767 catcagtgcgtggagacttgtttgtttggatttgtttgtaaactctagccttttgcactccttgtgctaggctttattgaatgaattaatcagttataaa 407668  T
Q  786 aaa--aaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatac 883  Q
    |||  | ||  || || |||||| |||||||||||||| | ||||| | |||||||||||||||       ||||||||||||||| | |||||||||||    
T  407667 aaatgacaccgctctttcaactttttagctttattttgcgatcaaactataatatttttatttggaaggaatatcatgttattgatgctgaaagaaatac 407568  T
Q  884 aacttaagaatatgaaaacttgaagcacacaaattgatgttcgtgc---tttcattcattcacatgcataacatagacattagtaatattacattacatg 980  Q
     ||| |||||||| ||||||||||| |||||||||||||||| |||   ||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  407567 tactaaagaatattaaaacttgaagtacacaaattgatgttcctgcacttttcattcattgacatgcataacatagacatgagtaatattacattacatg 407468  T
Q  981 gatagtcttaacacatactt 1000  Q
    ||||||||||||||| ||||    
T  407467 gatagtcttaacacagactt 407448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 687 - 1000
Target Start/End: Original strand, 416175 - 416494
Alignment:
Q  687 catcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtt-taag 785  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||   ||| |||     
T  416175 catcagtgcgtggagacttgtttgtttggatttgtttgtaaactctagccttttgcactccttgtgctaggctttattgaatgaattaatcagttataaa 416274  T
Q  786 aaa--aaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatac 883  Q
    |||  | ||  || || |||||| |||||||||||||| | ||||| | |||||||||||||||       ||||||||||||||| | |||||||||||    
T  416275 aaatgacaccgctctttcaactttttagctttattttgcgatcaaactataatatttttatttggaaggaatatcatgttattgatgctgaaagaaatac 416374  T
Q  884 aacttaagaatatgaaaacttgaagcacacaaattgatgttcgtgc---tttcattcattcacatgcataacatagacattagtaatattacattacatg 980  Q
     ||| |||||||| ||||||||||| |||||||||||||||| |||   ||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  416375 tactaaagaatattaaaacttgaagtacacaaattgatgttcctgcacttttcattcattgacatgcataacatagacatgagtaatattacattacatg 416474  T
Q  981 gatagtcttaacacatactt 1000  Q
    ||||||||||||||| ||||    
T  416475 gatagtcttaacacagactt 416494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 38792715 - 38792559
Alignment:
Q  8 atattacattgcatactaagcatt-atgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgta 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38792715 atattacattgcatactaagcattcatgttttttatgtaaatattttagcaggagcagaattgtgtctggatcggtgaaaatggtagtgtgaatattgta 38792616  T
Q  107 gctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 163  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  38792615 gctcccttcaatccaaattaagatcatcttggtgaagtaaacaaggttcaaatatag 38792559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 415592 - 415748
Alignment:
Q  8 atattacattgcatactaagcatt-atgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgta 106  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||   ||| ||||  | ||||||||||||||| |||| ||||    
T  415592 atattacattgcatactaagcatccatgttttctatgtaaatattttagcaggagcagaacaatgtatggagtggtgaaaatggtagtgtaaatactgta 415691  T
Q  107 gctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 163  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  415692 gctcccttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatatag 415748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 408350 - 408194
Alignment:
Q  8 atattacattgcatactaagcatt-atgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgta 106  Q
    |||||||||||||||||||| ||  ||||||| |||||||||||||||||||||||||||   ||| ||||  | ||||||||||||||| |||| ||||    
T  408350 atattacattgcatactaagaatccatgttttctatgtaaatattttagcaggagcagaacaatgtatggagtggtgaaaatggtagtgtaaatactgta 408251  T
Q  107 gctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 163  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  408250 gctcccttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatatag 408194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 49962412 - 49962493
Alignment:
Q  82 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 163  Q
    |||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||    
T  49962412 tgaaaatggtagtgtgaatactttagctcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgtaaatatag 49962493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 436 - 495
Target Start/End: Complemental strand, 407991 - 407932
Alignment:
Q  436 atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaagccaagatta 495  Q
    ||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  407991 atcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagatta 407932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 436 - 495
Target Start/End: Original strand, 415951 - 416010
Alignment:
Q  436 atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaagccaagatta 495  Q
    ||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  415951 atcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagatta 416010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 6458119 - 6458040
Alignment:
Q  82 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatat 161  Q
    ||||||||||| |||| ||||| | ||||||||||||| |||| |||||||| ||||| ||||||||||||| |||||||    
T  6458119 tgaaaatggtaatgtggatatttttgctcccttcaatctaaatcaagaacattttggtcaagtaaacaaggtacaaatat 6458040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 6758729 - 6758808
Alignment:
Q  82 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatat 161  Q
    ||||||||||| |||| ||||| | ||||| |||||||||||| |||||||| ||||| ||||||||||||| |||||||    
T  6758729 tgaaaatggtaatgtggatatttttgctcctttcaatccaaatcaagaacattttggtcaagtaaacaaggtacaaatat 6758808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 405
Target Start/End: Original strand, 6758850 - 6759010
Alignment:
Q  247 atgaacataacttattaagtatgtattctttttaggctccttatttttctcatgtcataaaccataatgttgtttgttctgacctattacaggtgttggt 346  Q
    |||||||||| |  |||| ||| ||||||||  ||||||||||||  ||||| |||| ||||||||||| |  |||||||||  | |||||||| |||||    
T  6758850 atgaacataagtggttaattatatattctttgcaggctccttattactctcaggtcacaaaccataatgctacttgttctgatttgttacaggtattggt 6758949  T
Q  347 ttgaagttttcttatt-gatggaaatacaacatgtt-gttttttactatgcgggaatacaa 405  Q
    ||||||| ||||||||  ||| ||||||||  |||| |||||||| | || ||||||||||    
T  6758950 ttgaagtcttcttattatatgaaaatacaatctgttggttttttattgtgtgggaatacaa 6759010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 405
Target Start/End: Complemental strand, 6457998 - 6457838
Alignment:
Q  247 atgaacataacttattaagtatgtattctttttaggctccttatttttctcatgtcataaaccataatgttgtttgttctgacctattacaggtgttggt 346  Q
    |||||||||| |  |||| ||| ||||||||  ||||||||||||  ||||| |||| ||||||||||| |  ||||| |||  | |||||||| |||||    
T  6457998 atgaacataagtggttaattatatattctttgcaggctccttattactctcaggtcacaaaccataatgctacttgttttgatatgttacaggtattggt 6457899  T
Q  347 ttgaagttttcttatt-gatggaaatacaacatgtt-gttttttactatgcgggaatacaa 405  Q
    ||||||| ||||||||  ||| ||||||||  |||| |||||||| | || ||||||||||    
T  6457898 ttgaagtcttcttattatatgaaaatacaatctgttggttttttattgtgtgggaatacaa 6457838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 388
Target Start/End: Original strand, 49962533 - 49962675
Alignment:
Q  247 atgaacataacttattaagtatgtattctttttaggctccttatttttctcatgtcataaaccataatgttgtttgttctgacctattacaggtgttggt 346  Q
    |||||||||| |  |||| ||| ||||||||  ||||||||||||  ||||| |||| |||| |||||| |  |||||||||  | || ||||| |||||    
T  49962533 atgaacataaatggttaattatatattctttgcaggctccttattactctcaggtcacaaactataatgctacttgttctgatttgttgcaggtattggt 49962632  T
Q  347 ttgaagttttcttattg-atggaaatacaacatgttgtttttt 388  Q
    ||||||| ||||||||| ||| ||||||||  ||||| |||||    
T  49962633 ttgaagtcttcttattgtatgaaaatacaatctgttggttttt 49962675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 791 - 847
Target Start/End: Original strand, 26305591 - 26305647
Alignment:
Q  791 actacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttg 847  Q
    |||||||||||||||| ||||||||||||||| ||  |||||| ||||||| |||||    
T  26305591 actacttttgcaactttttagctttattttgtattagaattttgatattttcatttg 26305647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 948 - 991
Target Start/End: Original strand, 49963147 - 49963190
Alignment:
Q  948 ataacatagacattagtaatattacattacatggatagtcttaa 991  Q
    ||||||||||  | ||||||||||||||||||||||||||||||    
T  49963147 ataacatagatttgagtaatattacattacatggatagtcttaa 49963190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 448 - 486
Target Start/End: Complemental strand, 6457759 - 6457721
Alignment:
Q  448 atcatagagacacaagttgaatgatccagacatcaaaag 486  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  6457759 atcatagagacgcaagttgaatgatccagccatcaaaag 6457721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 436 - 486
Target Start/End: Original strand, 49962756 - 49962806
Alignment:
Q  436 atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaag 486  Q
    ||||||| ||| ||| ||||||| ||||||||||||||||| |||||||||    
T  49962756 atcaacacaataatcttagagacgcaagttgaatgatccagccatcaaaag 49962806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 6e-80; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 687 - 1006
Target Start/End: Complemental strand, 24184250 - 24183925
Alignment:
Q  687 catcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtt-taag 785  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||   ||| |||     
T  24184250 catcagtgcgtggagacttgtttgtttggatttgtttgtaaactctagccttttgcactccttgtgctaggttttattgaatgaattaatcagttataaa 24184151  T
Q  786 aaa--aaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatac 883  Q
    |||  | ||  || || |||||| |||||||||||||||| ||||| | |||||||||||||||       ||||||||||||||| | |||||||||||    
T  24184150 aaatgacaccgctctttcaactttttagctttattttgtgatcaaactgtaatatttttatttggaaggaatatcatgttattgatgccgaaagaaatac 24184051  T
Q  884 aacttaagaatatgaaaacttgaagcacacaaattgatgttcgtgc---tttcattcattcacatgcataacatagacattagtaatattacattacatg 980  Q
     ||| |||||||| ||||||||||| |||||||||||||||| |||   ||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  24184050 tactaaagaatattaaaacttgaagtacacaaattgatgttcctgcacttttcattcattgacatgcataacatagacatgagtaatattacattacatg 24183951  T
Q  981 gatagtcttaacacatactttctaaa 1006  Q
    ||||||||||||||| |||| |||||    
T  24183950 gatagtcttaacacagacttcctaaa 24183925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 24184832 - 24184676
Alignment:
Q  8 atattacattgcatactaagcatt-atgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgta 106  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||   ||| ||||  | ||||||||||||||| |||| ||||    
T  24184832 atattacattgcatactaagcatccatgttttctatgtaaatattttagcaggagcagaacaatgtatggagtggtgaaaatggtagtgtaaatactgta 24184733  T
Q  107 gctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 163  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  24184732 gctcccttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatatag 24184676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 20786832 - 20786751
Alignment:
Q  82 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 163  Q
    |||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  20786832 tgaaaatggtagtgtgaatactgtagcttccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatatag 20786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 855 - 993
Target Start/End: Complemental strand, 20786244 - 20786105
Alignment:
Q  855 tatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgttcg-tgc---tttcattcattcacatgcata 950  Q
    ||||||||||||||| |  |||||||||| |   |||||||| ||||||||||| ||||||||||||||| | ||    ||| ||||||| ||||| |||    
T  20786244 tatcatgttattgatgccaaaagaaatacta---aagaatattaaaacttgaagtacacaaattgatgttagatggactttttattcattgacatgtata 20786148  T
Q  951 acatagacattagtaatattacattacatggatagtcttaaca 993  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  20786147 acatagacatgagtaatattacattgcatggatagtcttaaca 20786105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 436 - 495
Target Start/End: Complemental strand, 24184473 - 24184414
Alignment:
Q  436 atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaagccaagatta 495  Q
    ||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  24184473 atcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagatta 24184414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 8532312 - 8532254
Alignment:
Q  105 tagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 163  Q
    |||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||    
T  8532312 tagctcccttcaatccaaatcaagaacattttgctgaagtaaacaaggtgcatatatag 8532254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 9e-79; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 687 - 1000
Target Start/End: Original strand, 24345758 - 24346077
Alignment:
Q  687 catcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtt-taag 785  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||   ||| |||     
T  24345758 catcagtgcgtggagacttgtttgtttggatttgtttgtaaactctagccttttgcactccttgtgctaggctttattgaatgaattaatcagttataaa 24345857  T
Q  786 aaa--aaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatac 883  Q
    |||  | ||  || || |||||| |||||||||||||| | ||||| | |||||||||||||||       ||||||||||||||| | |||||||||||    
T  24345858 aaatgacaccgctctttcaactttttagctttattttgcgatcaaactataatatttttatttggaaggaatatcatgttattgatgctgaaagaaatac 24345957  T
Q  884 aacttaagaatatgaaaacttgaagcacacaaattgatgttcgtgc---tttcattcattcacatgcataacatagacattagtaatattacattacatg 980  Q
     ||| |||||||| ||||||||||| |||||||||||||||| |||   ||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  24345958 tactaaagaatattaaaacttgaagtacacaaattgatgttcctgcacttttcattcattgacatgcataacatagacatgagtaatattacattacatg 24346057  T
Q  981 gatagtcttaacacatactt 1000  Q
    ||||||||||||||| ||||    
T  24346058 gatagtcttaacacagactt 24346077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 687 - 1000
Target Start/End: Original strand, 24358030 - 24358349
Alignment:
Q  687 catcagtgtgtggaggcttgtttgtttggatttgtttgtaatctctaaccttttgtactccttgtgctaggctttattgaatgaattaagttgtt-taag 785  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||   ||| |||     
T  24358030 catcagtgcgtggagacttgtttgtttggatttgtttgtaaactctagccttttgcactccttgtgctaggctttattgaatgaattaatcagttataaa 24358129  T
Q  786 aaa--aaactacttttgcaacttcttagctttattttgtgttcaaattttaatatttttatttgnnnnnnntatcatgttattgatacagaaagaaatac 883  Q
    |||  | ||  || || |||||| |||||||||||||| | ||||| | |||||||||||||||       ||||||||||||||| | |||||||||||    
T  24358130 aaatgacaccgctctttcaactttttagctttattttgcgatcaaactataatatttttatttggaaggaatatcatgttattgatgctgaaagaaatac 24358229  T
Q  884 aacttaagaatatgaaaacttgaagcacacaaattgatgttcgtgc---tttcattcattcacatgcataacatagacattagtaatattacattacatg 980  Q
     ||| |||||||| ||||||||||| |||||||||||||||| |||   ||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  24358230 tactaaagaatattaaaacttgaagtacacaaattgatgttcctgcacttttcattcattgacatgcataacatagacatgagtaatattacattacatg 24358329  T
Q  981 gatagtcttaacacatactt 1000  Q
    ||||||||||||||| ||||    
T  24358330 gatagtcttaacacagactt 24358349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 24357447 - 24357603
Alignment:
Q  8 atattacattgcatactaagcatt-atgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgta 106  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||   ||| ||||  | ||||||||||||||| |||| ||||    
T  24357447 atattacattgcatactaagcatccatgttttctatgtaaatattttagcaggagcagaacaatgtatggagtggtgaaaatggtagtgtaaatactgta 24357546  T
Q  107 gctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 163  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  24357547 gctcccttcaatccaaatcaagaacatcttggtgaagaaaacaaggtgcaaatatag 24357603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 24345069 - 24345225
Alignment:
Q  8 atattacattgcatactaagcatt-atgttttttatgtaaatattttagcaggagcagaattgtgtctggatcgatgaaaatggtagtgtgaatattgta 106  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||   |||  |||  | ||||||||||||||| |||| ||||    
T  24345069 atattacattgcatactaagcatccatgttttctatgtaaatattttagcaggagcagaacaatgtacggagtggtgaaaatggtagtgtaaatactgta 24345168  T
Q  107 gctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 163  Q
    |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||    
T  24345169 gctcccttcaatccaaatcaagaatatcttggtgaagaaaacaaggtgcaaatatag 24345225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 247 - 363
Target Start/End: Original strand, 24345310 - 24345426
Alignment:
Q  247 atgaacataacttattaagtatgtattctttttaggctccttatttttctcatgtcataaaccataatgttgtttgttctgacctattacaggtgttggt 346  Q
    |||||||||||| ||||||||| ||||||||  |||||||||||| |||| | |||||||||||||||| || |||||| || || |||||||| || ||    
T  24345310 atgaacataactgattaagtatatattctttgcaggctccttattattctgaggtcataaaccataatgctgcttgttcagatctgttacaggtatttgt 24345409  T
Q  347 ttgaagttttcttattg 363  Q
    |||||||||||||||||    
T  24345410 ttgaagttttcttattg 24345426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 436 - 495
Target Start/End: Original strand, 24357806 - 24357865
Alignment:
Q  436 atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaagccaagatta 495  Q
    ||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||    
T  24357806 atcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagatta 24357865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 436 - 495
Target Start/End: Original strand, 24345535 - 24345592
Alignment:
Q  436 atcaacataatcatcatagagacacaagttgaatgatccagacatcaaaagccaagatta 495  Q
    ||||||| ||||||||  |||||| |||||||||||||||| ||||||||||||||||||    
T  24345535 atcaacacaatcatca--gagacataagttgaatgatccagccatcaaaagccaagatta 24345592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 15047381 - 15047300
Alignment:
Q  82 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 163  Q
    |||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  15047381 tgaaaatggtagtgtgaatactgtagcttccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatatag 15047300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 38176581 - 38176500
Alignment:
Q  82 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatatag 163  Q
    |||||||||||||||||||| | |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  38176581 tgaaaatggtagtgtgaatactttagctcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatatag 38176500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 855 - 993
Target Start/End: Complemental strand, 15046686 - 15046547
Alignment:
Q  855 tatcatgttattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgttcg-tgc---tttcattcattcacatgcata 950  Q
    ||||||||||||||| |  |||||||||| |   |||||||| ||||||||||| ||||||||||||||| | ||    ||| ||| ||| ||||| |||    
T  15046686 tatcatgttattgatgccaaaagaaatacta---aagaatattaaaacttgaagtacacaaattgatgttagatggactttttattgattgacatgtata 15046590  T
Q  951 acatagacattagtaatattacattacatggatagtcttaaca 993  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  15046589 acatagacatgagtaatattacattgcatggatagtcttaaca 15046547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 388
Target Start/End: Complemental strand, 38176460 - 38176318
Alignment:
Q  247 atgaacataacttattaagtatgtattctttttaggctccttatttttctcatgtcataaaccataatgttgtttgttctgacctattacaggtgttggt 346  Q
    |||||||||| | ||||| ||| ||||||||  ||||||||||||  ||||| |||| |||| |||||| |  |||||||||  | || ||||| |||||    
T  38176460 atgaacataagtgattaattatatattctttgcaggctccttattactctcaggtcacaaactataatgctacttgttctgatttgttgcaggtattggt 38176361  T
Q  347 ttgaagttttcttattg-atggaaatacaacatgttgtttttt 388  Q
    ||||||| ||||||||| ||| ||||||||  ||||| |||||    
T  38176360 ttgaagtcttcttattgtatgaaaatacaatctgttggttttt 38176318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 962 - 991
Target Start/End: Complemental strand, 15229672 - 15229643
Alignment:
Q  962 agtaatattacattacatggatagtcttaa 991  Q
    ||||||||||||||||||||||||||||||    
T  15229672 agtaatattacattacatggatagtcttaa 15229643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 930 - 991
Target Start/End: Complemental strand, 38175850 - 38175789
Alignment:
Q  930 tttcattcattcacatgcataacatagacattagtaatattacattacatggatagtcttaa 991  Q
    ||||||||| | | ||| ||||||||||  | ||||| ||||||||||||||||||||||||    
T  38175850 tttcattcaatgaaatgtataacatagatttgagtaacattacattacatggatagtcttaa 38175789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 863 - 1006
Target Start/End: Original strand, 27980060 - 27980208
Alignment:
Q  863 tattgatacagaaagaaatacaacttaagaatatgaaaacttgaagcacacaaattgatgttcgtgc---tttcattcattcacatgcataacatagaca 959  Q
    ||||||| | ||||||||||  |||||||||||| ||||||||||| ||||||||||||||||   |   ||||||||||| | ||| ||||||||||||    
T  27980060 tattgatgctgaaagaaataatacttaagaatattaaaacttgaagtacacaaattgatgttccaacacttttcattcattgatatgtataacatagaca 27980159  T
Q  960 ttagta--atattacattacatggatagtcttaacacatactttctaaa 1006  Q
      ||||  ||||||||| ||||||| |||||||||||| |||| |||||    
T  27980160 aaagtaatatattacataacatggacagtcttaacacagacttcctaaa 27980208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 39676811 - 39676732
Alignment:
Q  82 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatat 161  Q
    ||||||||||| |||| ||||| | |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  39676811 tgaaaatggtaatgtggatatttttgctcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatat 39676732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 42632961 - 42632882
Alignment:
Q  82 tgaaaatggtagtgtgaatattgtagctcccttcaatccaaattaagaacatcttggtgaagtaaacaaggtgcaaatat 161  Q
    ||||||||||| |||||||| | || ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||    
T  42632961 tgaaaatggtaatgtgaatactttaactcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaatat 42632882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 362
Target Start/End: Complemental strand, 42632840 - 42632725
Alignment:
Q  247 atgaacataacttattaagtatgtattctttttaggctccttatttttctcatgtcataaaccataatgttgtttgttctgacctattacaggtgttggt 346  Q
    |||||||||| |  |||| ||| ||||||||  ||||||||||||  ||||| |||| ||||||||||| |  ||||||| |  | || ||||| |||||    
T  42632840 atgaacataagtggttaattatatattctttgcaggctccttattactctcaggtcacaaaccataatgctacttgttctaatttgttgcaggtattggt 42632741  T
Q  347 ttgaagttttcttatt 362  Q
    ||||||| ||||||||    
T  42632740 ttgaagtcttcttatt 42632725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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