View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4558-Insertion-5 (Length: 860)
Name: NF4558-Insertion-5
Description: NF4558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4558-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 699; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 8 - 857
Target Start/End: Complemental strand, 302710 - 301875
Alignment:
| Q |
8 |
gagcaaagacacaactgtctctgttacaagcaaggtatacatcctacgttactacatcatctaatatagacagtgtacctatttgaagacacaagtgtga |
107 |
Q |
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| T |
302710 |
gagcaaagacacaacagtctctgttacaagcaaggtatacatactacgttactacatcatctaatatagacagtgtacctatttgaagacacaagtgtga |
302611 |
T |
|
| Q |
108 |
ctactaaccagcagttaggaaagttaggtatagaatccaatatcataaatccaatattcccatacacagcagcatgattatttaatacccattctctata |
207 |
Q |
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| T |
302610 |
ctactaaccagcagttaggaaagttaggtatagaatccaatat--------------tcccataca--gcagcatgattatttaatacccatgctccata |
302527 |
T |
|
| Q |
208 |
taccaattgaataggggaattgtagaacagaacaaggctaggccaaaatgtgtcgatcattgcatactgtaagcctcctctttcctatgacctcaaccat |
307 |
Q |
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| T |
302526 |
taccaattgaataggggaattgtagaacagaacaaggctaggccaaaatgtgtcgatcattgcatactgtaagcctcctctttcctatgacctcaaccat |
302427 |
T |
|
| Q |
308 |
atagnnnnnnn-atgctgcaagagtgtcttgtggctcaagtctttgtccaaaacaccaacaaaaattgtaggggcagatgtgtgtgtatatcccagaata |
406 |
Q |
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| T |
302426 |
atagttttttttatgctgcaagagtgtcttgtggctcaagtctttgtccaaaacaccaacaaaaattgtaggggcagatgtgtgtgtatatcccagaata |
302327 |
T |
|
| Q |
407 |
gaatacagcacaactccaatgtgtcaatgcataagttgtggaaaaagctttgcataatatatacccggaacacaagaaagacactgcccttggaatcaat |
506 |
Q |
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| T |
302326 |
gaatacaacacaactccaatgtgtcaatgcataagttgtggaaaaagctttgcataatatatacccggaacacaagaaagatactgcc-ttggaatcaat |
302228 |
T |
|
| Q |
507 |
caaaattttataaaggatgcaactatttcaaaaagaaaatttgtaaaaagacat--taaaatttgaacaaggatttgcttaagctggaagatcagtctat |
604 |
Q |
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| T |
302227 |
aaattttttataaaggatgcaactatttcaaaaagaaaatttgtaaaaagacatattaaaatttgaacaaggatttgctgaagctggaagatcagtctat |
302128 |
T |
|
| Q |
605 |
tgtaaaatgacaaatatgcacaccagaatatggatacaatatttttcacatgtctcgatcaaatgcctgcgattaggtaaaaatattaaaaataacagtt |
704 |
Q |
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| T |
302127 |
tgtaaaatgacaaatattcacaccagaatatggatacaatatttttcacatgtctcgatcaaatgcctgcgattaggtaaaaatattaaaaataacagtt |
302028 |
T |
|
| Q |
705 |
cggctcatgtttctgcctaaaagaatgagaaatgagataacagttaaccgtataaaaacatacataagagaatagcttcccaagaaaactatatctcacc |
804 |
Q |
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| T |
302027 |
cggctcatgtttctgcctaaaagaatgagaaatgagataacagttaaccgtataaaaacatacataagagaatagcttccaaagaaaactatatctcacc |
301928 |
T |
|
| Q |
805 |
agaatagaattaaacaaagacaacattgcggtagaaattgacagaactaaata |
857 |
Q |
| |
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| T |
301927 |
agaatagaattaaacaaagacaacattgcggtagaaattgacagaactaaata |
301875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 322 - 471
Target Start/End: Original strand, 27464013 - 27464155
Alignment:
| Q |
322 |
ctgcaagagtgtcttgtggctcaagtctttgtccaaaacaccaacaaaaattgtaggggcagatgtgtgtgtatatcccagaatagaatacagcacaact |
421 |
Q |
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||||||||||||| | || ||||||||||||||||||| ||||||||||||||| || |||| |||||||| | |||||||||||| ||| ||| |
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| T |
27464013 |
ctgcaagagtgtcctatgactcaagtctttgtccaaaataccaacaaaaattgtgggtacaga----tgtgtataacacagaatagaata---cactact |
27464105 |
T |
|
| Q |
422 |
ccaatgtgtcaatgcataagttgtggaaaaagctttgcataatatatacc |
471 |
Q |
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| T |
27464106 |
ccaatctgttaatgcagaagttgtagaaaaagccgtgcataatatatacc |
27464155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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