View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4558_high_2 (Length: 248)
Name: NF4558_high_2
Description: NF4558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4558_high_2 |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold0158 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 37934 - 38064
Alignment:
| Q |
85 |
aaaggataagttcatgagaaaatccatgactataaatatacgttatatattgagccatcagttgtactaccttatgtattgcgtactcgtcagtcagtgc |
184 |
Q |
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||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37934 |
aaaggataa-ttcaggagaaaatccatgactataaatacacgttatatattgagccatcagttgtactaccttatgtattgcatactcgtcagtcagtgc |
38032 |
T |
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| Q |
185 |
actattactcagatgagaattatatttgatgt |
216 |
Q |
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|||||||||||||||||||| |||||||||| |
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| T |
38033 |
gctattactcagatgagaattttatttgatgt |
38064 |
T |
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Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 20808946 - 20809073
Alignment:
| Q |
100 |
gagaaaatccatgactataaatatacgttatatattgagccatcagttgtactaccttatgtattgcgtactcgtcagtcagtgcactattactcagatg |
199 |
Q |
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| T |
20808946 |
gagaaaatccatgactataaatatacgtcatatattgagccatcaattgtactatcttatgtgttgcatactcgtcagtcagtgcactattactcagatg |
20809045 |
T |
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| Q |
200 |
agaattatatttgatgtactcgtcagtt |
227 |
Q |
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| T |
20809046 |
ggaattatatttgatgtactcgtcagtt |
20809073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20808762 - 20808844
Alignment:
| Q |
1 |
ttaaccacgatgtttcgaaaagtaaataaaagaatgttgccatacaagttaagaattcgtcagtcacctatggcatgggacta |
83 |
Q |
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| T |
20808762 |
ttaaacacgatgtttcataaagtaaataaaagaatgttgccatacaagttaagaattcatcagtgacctatggcatgggacta |
20808844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 6286544 - 6286661
Alignment:
| Q |
110 |
atgactataaatatacgttatatattgagccatcagttgtactaccttatgtattgcgtactcgtcagtcagtgcactattactcagatgagaattatat |
209 |
Q |
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||||||||| ||||||||||| |||| ||||||||||||||||||||| | ||||| ||||||| |||| |||||||||||||||||| ||||||||| |
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| T |
6286544 |
atgactatagatatacgttatgtattaagccatcagttgtactaccttgtctattgtatactcgttagtcggtgcactattactcagatatgaattatat |
6286643 |
T |
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| Q |
210 |
ttgatgtactcgtcagtt |
227 |
Q |
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| T |
6286644 |
ttaatgtaatcgccagtt |
6286661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11909 - 11991
Alignment:
| Q |
1 |
ttaaccacgatgtttcgaaaagtaaataaaagaatgttgccatacaagttaagaattcgtcagtcacctatggcatgggacta |
83 |
Q |
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|||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |
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| T |
11909 |
ttaaacacaatgtttcagaaagtaaataaaagaatgttgccatataagttaagaattcatcagtgacctatggcatgggacta |
11991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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