View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4558_high_3 (Length: 246)
Name: NF4558_high_3
Description: NF4558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4558_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31944340 - 31944561
Alignment:
| Q |
1 |
ccgatgaagcatgcgtcatcggaattgacggacgattgcttcgctttctttcttctggaaggaagaagagaaaccagttcttcttcaacgggaataaccg |
100 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31944340 |
ccgatgaagcatgcatcatcggaattgaccgacgattgcttcgctttctttcttctggaaggaagaagagaaaccagttcttcttcaacgggaataaccg |
31944439 |
T |
|
| Q |
101 |
gagattttttggatttcttccgttgagaagaacgaggaacgacgtcgtcttgtttggaagatttacgaacgcgttttttaggcattgttgaggtgaaaga |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31944440 |
gagatattttggatttcttccgttgagaagaacgaggaacgacgtcgtcttgtttgggagatttacgaacgcgttttttaggcattattgaggtgaaaga |
31944539 |
T |
|
| Q |
201 |
gaaaataagtgcttattttttg |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
31944540 |
gaaaataagtgcttattttttg |
31944561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9394832 - 9395056
Alignment:
| Q |
1 |
ccgatgaagcatgcgtcatcggaattgacggacgattgcttcgctttctttcttctggaaggaagaagagaaacc---agttcttcttcaacgggaataa |
97 |
Q |
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|||| ||| ||||| || ||||| || || || ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| |||||| ||| |
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| T |
9394832 |
ccgacgaaacatgcatcgtcggagttaaccgaagattgcttcgctttctttcttctagaaggaagaagcgaaacctgtagttcttcttcgacgggattaa |
9394931 |
T |
|
| Q |
98 |
ccggagattttttggatttcttccgttgagaagaacgaggaacgacgtcgtcttgtttggaagatttacgaacgcgttttttaggcattgttgaggtgaa |
197 |
Q |
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|||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9394932 |
ccggagattttttggatttcttccatttagaagaatgaggaacgacgtcgtcttgtttggaagatttacgaacgcgttttttaggcattgttgaggtgaa |
9395031 |
T |
|
| Q |
198 |
agagaaaataagtgcttattttttg |
222 |
Q |
| |
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|||||||||||| ||| ||||||| |
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| T |
9395032 |
ggagaaaataagtacttgttttttg |
9395056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1342389 - 1342601
Alignment:
| Q |
1 |
ccgatgaagcatgcgtcatcggaattgacggacgattgcttcgctttctttcttctggaaggaagaagagaaaccagttcttcttcaacgggaataaccg |
100 |
Q |
| |
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|||| ||| ||||| |||||||| || || || |||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| ||| |
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| T |
1342389 |
ccgacgaaacatgcatcatcggagttaaccgaagattgcttcgatttctttcttctagaaggaagaagcgaaaccagttcttcttcaactgga------- |
1342481 |
T |
|
| Q |
101 |
gagattttttggatttcttccgttgagaagaacgaggaacgacgtcgtcttgtttggaagatttacgaacgcgttttttaggcattgttgaggtgaaaga |
200 |
Q |
| |
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|||| ||| | ||||||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||| |||||||||| ||||||| || |
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| T |
1342482 |
--gattgtttagctttcttccgtttagaagaatgaggaacaacgtcgtcttgattggaagatttgcgaacgcgtttttgaggcattgttaaggtgaatga |
1342579 |
T |
|
| Q |
201 |
gaaaataagtgcttattttttg |
222 |
Q |
| |
|
|| |||||| |||||||||||| |
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|
| T |
1342580 |
gagaataagcgcttattttttg |
1342601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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