View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4558_low_5 (Length: 242)

Name: NF4558_low_5
Description: NF4558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4558_low_5
NF4558_low_5
[»] chr6 (20 HSPs)
chr6 (25-226)||(19170383-19170582)
chr6 (94-226)||(22073366-22073498)
chr6 (94-226)||(15664891-15665023)
chr6 (52-196)||(20047237-20047372)
chr6 (52-196)||(20039430-20039565)
chr6 (23-164)||(18964095-18964237)
chr6 (32-164)||(24142183-24142317)
chr6 (32-164)||(24148673-24148807)
chr6 (24-110)||(1550884-1550968)
chr6 (94-132)||(30435933-30435971)
chr6 (1-127)||(20049625-20049747)
chr6 (1-127)||(20057486-20057608)
chr6 (1-44)||(22073296-22073339)
chr6 (93-132)||(16815619-16815659)
chr6 (93-132)||(16824374-16824414)
chr6 (94-132)||(614592-614631)
chr6 (94-132)||(622512-622551)
chr6 (94-132)||(9130455-9130494)
chr6 (94-132)||(9144291-9144330)
chr6 (94-132)||(16324292-16324331)
[»] scaffold0002 (3 HSPs)
scaffold0002 (32-226)||(297995-298188)
scaffold0002 (82-226)||(361397-361541)
scaffold0002 (55-197)||(122705-122844)
[»] chr4 (18 HSPs)
chr4 (93-226)||(13101639-13101772)
chr4 (94-226)||(7945476-7945608)
chr4 (94-226)||(16361603-16361733)
chr4 (100-226)||(15878528-15878654)
chr4 (113-226)||(18216989-18217102)
chr4 (52-226)||(14926303-14926467)
chr4 (27-226)||(22174190-22174390)
chr4 (23-226)||(17405-17608)
chr4 (55-223)||(27342189-27342356)
chr4 (112-223)||(44623321-44623433)
chr4 (31-164)||(25985880-25986011)
chr4 (23-114)||(16719420-16719505)
chr4 (89-151)||(15566506-15566567)
chr4 (89-151)||(15579152-15579213)
chr4 (1-44)||(16361529-16361572)
chr4 (93-132)||(20841376-20841416)
chr4 (94-132)||(22704846-22704886)
chr4 (94-132)||(22713817-22713857)
[»] chr3 (35 HSPs)
chr3 (93-226)||(8805112-8805245)
chr3 (93-226)||(8813512-8813645)
chr3 (93-226)||(15628558-15628691)
chr3 (94-226)||(15621198-15621330)
chr3 (94-212)||(19834724-19834840)
chr3 (94-226)||(5650329-5650459)
chr3 (55-197)||(18886622-18886763)
chr3 (55-161)||(18890901-18891005)
chr3 (55-161)||(18901084-18901188)
chr3 (55-197)||(30063338-30063477)
chr3 (55-158)||(4435134-4435235)
chr3 (55-158)||(4455925-4456026)
chr3 (94-164)||(15910687-15910757)
chr3 (94-164)||(15924930-15925000)
chr3 (96-164)||(15577919-15577987)
chr3 (94-157)||(15608993-15609056)
chr3 (168-226)||(18692453-18692511)
chr3 (168-226)||(18707823-18707881)
chr3 (23-164)||(18693655-18693792)
chr3 (94-136)||(21608624-21608667)
chr3 (94-136)||(21617252-21617295)
chr3 (94-132)||(5944724-5944763)
chr3 (94-132)||(5958836-5958875)
chr3 (94-132)||(11628614-11628653)
chr3 (1-44)||(14253477-14253520)
chr3 (94-132)||(15527710-15527749)
chr3 (94-132)||(15536399-15536438)
chr3 (94-132)||(20602732-20602771)
chr3 (23-129)||(2253932-2254035)
chr3 (94-132)||(37254846-37254884)
chr3 (94-132)||(37264686-37264724)
chr3 (94-131)||(46392117-46392155)
chr3 (94-131)||(46399865-46399903)
chr3 (23-119)||(49965879-49965972)
chr3 (180-221)||(14253640-14253681)
[»] scaffold0420 (1 HSPs)
scaffold0420 (94-226)||(12389-12521)
[»] chr2 (13 HSPs)
chr2 (27-226)||(22517417-22517616)
chr2 (94-226)||(21066006-21066138)
chr2 (96-197)||(17332247-17332348)
chr2 (32-164)||(22935551-22935684)
chr2 (32-164)||(22941515-22941648)
chr2 (32-164)||(22955410-22955543)
chr2 (48-226)||(29755583-29755757)
chr2 (1-44)||(21065936-21065979)
chr2 (70-139)||(21069738-21069808)
chr2 (116-164)||(12369197-12369245)
chr2 (94-132)||(12375887-12375926)
chr2 (94-132)||(12389714-12389753)
chr2 (179-226)||(30797136-30797183)
[»] chr7 (25 HSPs)
chr7 (94-226)||(42016287-42016419)
chr7 (94-226)||(15685130-15685261)
chr7 (31-164)||(4892087-4892219)
chr7 (94-164)||(17014722-17014792)
chr7 (23-131)||(8911844-8911952)
chr7 (82-187)||(19242951-19243057)
chr7 (24-110)||(15765407-15765491)
chr7 (32-164)||(5647735-5647871)
chr7 (94-132)||(4850762-4850800)
chr7 (88-224)||(15821926-15822047)
chr7 (94-151)||(19881357-19881415)
chr7 (94-132)||(30363789-30363827)
chr7 (94-132)||(30377854-30377892)
chr7 (88-164)||(3335211-3335288)
chr7 (173-221)||(35076620-35076668)
chr7 (94-132)||(8811291-8811330)
chr7 (94-132)||(8819105-8819144)
chr7 (94-132)||(9461795-9461834)
chr7 (94-132)||(9475553-9475592)
chr7 (94-132)||(16387233-16387272)
chr7 (94-132)||(16401360-16401399)
chr7 (94-132)||(23877329-23877368)
chr7 (94-132)||(23886185-23886224)
chr7 (28-107)||(3082323-3082399)
chr7 (173-221)||(35091143-35091191)
[»] scaffold0050 (1 HSPs)
scaffold0050 (94-226)||(39610-39740)
[»] chr1 (13 HSPs)
chr1 (23-226)||(6196477-6196673)
chr1 (23-194)||(6204360-6204524)
chr1 (94-226)||(45498405-45498539)
chr1 (23-164)||(16886166-16886306)
chr1 (96-151)||(20519660-20519715)
chr1 (52-159)||(39455679-39455788)
chr1 (94-164)||(20978646-20978715)
chr1 (70-173)||(28426177-28426280)
chr1 (1-44)||(20978742-20978785)
chr1 (94-162)||(44909156-44909223)
chr1 (94-132)||(5622900-5622939)
chr1 (94-132)||(5637039-5637078)
chr1 (1-48)||(13187068-13187115)
[»] scaffold0378 (1 HSPs)
scaffold0378 (94-226)||(2268-2398)
[»] scaffold0014 (1 HSPs)
scaffold0014 (94-226)||(5079-5211)
[»] scaffold0101 (1 HSPs)
scaffold0101 (23-226)||(15312-15508)
[»] chr8 (13 HSPs)
chr8 (94-226)||(24484073-24484205)
chr8 (88-226)||(20734558-20734697)
chr8 (32-164)||(21473950-21474084)
chr8 (27-156)||(27807103-27807231)
chr8 (94-132)||(12306435-12306473)
chr8 (173-226)||(20726733-20726786)
chr8 (173-226)||(20739631-20739684)
chr8 (70-164)||(14890557-14890651)
chr8 (1-44)||(15448926-15448969)
chr8 (94-132)||(23266720-23266759)
chr8 (180-226)||(23640913-23640959)
chr8 (95-132)||(39630212-39630250)
chr8 (95-132)||(39639763-39639801)
[»] scaffold0032 (1 HSPs)
scaffold0032 (52-226)||(27609-27773)
[»] scaffold0573 (2 HSPs)
scaffold0573 (52-226)||(554-718)
scaffold0573 (52-226)||(1151-1315)
[»] chr5 (30 HSPs)
chr5 (52-226)||(25449093-25449257)
chr5 (111-224)||(18956618-18956730)
chr5 (32-164)||(26547079-26547213)
chr5 (23-164)||(23575993-23576134)
chr5 (70-173)||(33313137-33313240)
chr5 (70-173)||(33303933-33304036)
chr5 (94-132)||(15778393-15778431)
chr5 (94-132)||(15792628-15792666)
chr5 (2-110)||(25676418-25676521)
chr5 (94-132)||(36369967-36370005)
chr5 (94-132)||(36383895-36383933)
chr5 (94-132)||(36994630-36994668)
chr5 (94-132)||(37008568-37008606)
chr5 (94-132)||(7253855-7253894)
chr5 (94-132)||(7261298-7261337)
chr5 (94-132)||(7787697-7787736)
chr5 (94-132)||(7795547-7795586)
chr5 (94-132)||(11938379-11938418)
chr5 (94-132)||(11952303-11952342)
chr5 (94-132)||(12386104-12386143)
chr5 (94-132)||(12394797-12394836)
chr5 (94-132)||(21689413-21689452)
chr5 (94-132)||(21697332-21697371)
chr5 (94-132)||(31512535-31512574)
chr5 (94-132)||(31526660-31526699)
chr5 (94-132)||(17949318-17949356)
chr5 (94-132)||(17963207-17963245)
chr5 (71-139)||(21727753-21727822)
chr5 (71-139)||(21807238-21807307)
chr5 (23-110)||(29902589-29902675)
[»] scaffold0152 (5 HSPs)
scaffold0152 (94-173)||(14767-14846)
scaffold0152 (100-172)||(15063-15135)
scaffold0152 (100-173)||(14845-14918)
scaffold0152 (106-173)||(14927-14994)
scaffold0152 (100-173)||(14993-15064)
[»] scaffold0075 (1 HSPs)
scaffold0075 (23-226)||(57103-57306)
[»] scaffold0048 (1 HSPs)
scaffold0048 (55-169)||(3814-3926)
[»] scaffold0019 (2 HSPs)
scaffold0019 (27-221)||(12707-12904)
scaffold0019 (27-226)||(22390-22592)
[»] scaffold1855 (1 HSPs)
scaffold1855 (52-226)||(762-926)
[»] scaffold0049 (1 HSPs)
scaffold0049 (23-164)||(22046-22186)
[»] scaffold0770 (1 HSPs)
scaffold0770 (94-191)||(2374-2474)
[»] scaffold0269 (1 HSPs)
scaffold0269 (23-226)||(13166-13360)
[»] scaffold0029 (4 HSPs)
scaffold0029 (94-191)||(100678-100778)
scaffold0029 (7-157)||(36713-36856)
scaffold0029 (93-132)||(35160-35200)
scaffold0029 (94-132)||(21420-21459)
[»] scaffold0551 (1 HSPs)
scaffold0551 (23-159)||(6624-6759)
[»] scaffold0503 (2 HSPs)
scaffold0503 (31-164)||(523-651)
scaffold0503 (31-164)||(5090-5218)
[»] scaffold0956 (1 HSPs)
scaffold0956 (23-164)||(467-602)
[»] scaffold0243 (1 HSPs)
scaffold0243 (82-226)||(22281-22422)
[»] scaffold0540 (1 HSPs)
scaffold0540 (23-110)||(1585-1667)
[»] scaffold0458 (1 HSPs)
scaffold0458 (52-159)||(7929-8038)
[»] scaffold1271 (2 HSPs)
scaffold1271 (31-129)||(514-609)
scaffold1271 (176-226)||(440-490)
[»] scaffold1796 (1 HSPs)
scaffold1796 (23-110)||(427-512)
[»] scaffold0094 (2 HSPs)
scaffold0094 (138-226)||(29108-29198)
scaffold0094 (23-112)||(29218-29303)
[»] scaffold0084 (2 HSPs)
scaffold0084 (138-226)||(35413-35503)
scaffold0084 (23-110)||(35525-35608)
[»] scaffold0067 (1 HSPs)
scaffold0067 (89-226)||(43058-43189)
[»] scaffold0484 (1 HSPs)
scaffold0484 (70-139)||(10040-10110)
[»] scaffold0362 (1 HSPs)
scaffold0362 (1-92)||(3365-3452)
[»] scaffold1761 (1 HSPs)
scaffold1761 (94-136)||(151-194)
[»] scaffold1623 (1 HSPs)
scaffold1623 (94-132)||(836-875)
[»] scaffold1575 (1 HSPs)
scaffold1575 (94-132)||(1312-1351)
[»] scaffold0755 (1 HSPs)
scaffold0755 (94-132)||(2167-2206)
[»] scaffold0431 (1 HSPs)
scaffold0431 (94-132)||(1449-1488)
[»] scaffold0068 (2 HSPs)
scaffold0068 (94-132)||(16539-16578)
scaffold0068 (94-132)||(24458-24497)
[»] scaffold0011 (1 HSPs)
scaffold0011 (94-132)||(201422-201461)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-44)||(6229-6272)
[»] scaffold0104 (1 HSPs)
scaffold0104 (8-46)||(11979-12017)
[»] scaffold0721 (1 HSPs)
scaffold0721 (94-130)||(1653-1690)


Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 19170383 - 19170582
Alignment:
Q  25 aaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttat 123  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||| |||  |||||||| |||||||||||| ||||||||||  ||||||||||||    
T  19170383 aaggatattagaatgtaaattagg-ctttgatgtaaataatttgtttttttcttgtcatttatttttccgcagactttagaatgtaccataggcttttat 19170481  T
Q  124 gtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatga 223  Q
    ||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  19170482 gtaatagtcgtaggtgcatgtgtgcgtg--tgtgtgtatccctcttatctgctttgtagtttaggtcaagggtccttgtgatggtccaacgccaccatga 19170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 22073366 - 22073498
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22073366 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 22073465  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||||| |||||||| |||||||||||||    
T  22073466 ggtcctcgtggtggtccaacgccaccatgaggt 22073498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 15665023 - 15664891
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||    
T  15665023 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgtgtgcgtgtgtgtatgtcttttatctgctttgtagtttaggtcaaa 15664924  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||| | ||| |||||||| |||||||| ||||    
T  15664923 ggtcattgtggtggtccaacgccaccataaggt 15664891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 20047372 - 20047237
Alignment:
Q  52 ttgatgtaaataatttattt--tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcg 149  Q
    ||||||||||||||||||||  | |||  |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||          
T  20047372 ttgatgtaaataatttatttatttttcttgtcattta-ttttctgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatg------ 20047280  T
Q  150 tgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggt 196  Q
        |||||||||| ||||||||||||||||||||||||||||||||    
T  20047279 ----tgtgtgtatgtctcttatctgctttgtagtttaggtcaaaggt 20047237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 20039565 - 20039430
Alignment:
Q  52 ttgatgtaaataatttattt--tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcg 149  Q
    ||||||||||||||||||||  | |||  |||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||          
T  20039565 ttgatgtaaataatttatttatttttcttgtcattta-ttttctgcagaccttagaatgtaaattggcttttatgtaatagtcgtaggtgcatg------ 20039473  T
Q  150 tgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggt 196  Q
        |||||||||| ||||||||||||||||||||||||||||||||    
T  20039472 ----tgtgtgtatgtctcttatctgctttgtagtttaggtcaaaggt 20039430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 18964237 - 18964095
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta-aatagg-cttt 120  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||  |||||||| ||| ||||| ||||||  |||    
T  18964237 gcaatgatgttagaatgtaaattaggcctttgatgtaaataatttattttattcccatcatttactttctcgcagaccatagcatgtataataggttttt 18964138  T
Q  121 tatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    | ||||||| |  |||||||||||||||||| ||| ||||||||    
T  18964137 tttgtaataat-ttaggtgcatgtgtgcgtgtgtgggtgtatgc 18964095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 24142317 - 24142183
Alignment:
Q  32 ttagaatgtaaattagggctttgatgtaaataatttattt---tattcccgtcatttacttttcc-gcagaccttagaatgtaaataggcttttatgtaa 127  Q
    ||||||||||||||||| ||| ||||||||||||||||||   | |||  |||||||| ||||   ||||||||||||||||||||||| |||| |||||    
T  24142317 ttagaatgtaaattaggcctt-gatgtaaataatttatttactttttcttgtcatttattttttttgcagaccttagaatgtaaataggtttttttgtaa 24142219  T
Q  128 tagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    ||||  |||||||||||||||||| ||| ||| ||||    
T  24142218 tagt-ttaggtgcatgtgtgcgtgtgtgggtgcatgc 24142183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 24148807 - 24148673
Alignment:
Q  32 ttagaatgtaaattagggctttgatgtaaataatttattt---tattcccgtcatttacttttcc-gcagaccttagaatgtaaataggcttttatgtaa 127  Q
    ||||||||||||||||| ||| ||||||||||||||||||   | |||  |||||||| ||||   ||||||||||||||||||||||| |||| |||||    
T  24148807 ttagaatgtaaattaggcctt-gatgtaaataatttatttactttttcttgtcatttattttttttgcagaccttagaatgtaaataggtttttttgtaa 24148709  T
Q  128 tagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    ||||  |||||||||||||||||| ||| ||| ||||    
T  24148708 tagt-ttaggtgcatgtgtgcgtgtgtgggtgcatgc 24148673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 1550884 - 1550968
Alignment:
Q  24 caaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta 110  Q
    ||||||||||||||||||||||| || ||| |||||||||||| ||| | |||  |||||||| |||||||||||||||||||||||    
T  1550884 caaggatattagaatgtaaatta-ggttttaatgtaaataattcattattttcttgtcattta-ttttccgcagaccttagaatgta 1550968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 30435971 - 30435933
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30435971 gcagaccttagaatgtaaataggcttttatgtaatagtc 30435933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 20049747 - 20049625
Alignment:
Q  1 ttttacgtcatttatttttgctgcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagacc 100  Q
    ||||| ||||||||||| | |  |||||||||||||||||||||   ||| || |||||||| ||||||||  || ||||||||||||||| ||||||||    
T  20049747 ttttatgtcatttatttctacaacaaggatattagaatgtaaatataggc-ttaatgtaaattatttattt--tttccgtcatttactttt-cgcagacc 20049652  T
Q  101 ttagaatgtaaataggcttttatgtaa 127  Q
     ||| |||||  |||||||| ||||||    
T  20049651 atagcatgtatctaggctttaatgtaa 20049625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 20057608 - 20057486
Alignment:
Q  1 ttttacgtcatttatttttgctgcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagacc 100  Q
    ||||| ||||||||||| | |  |||||||||||||||||||||   ||| || |||||||| ||||||||| ||  |||||||||||||| ||||||||    
T  20057608 ttttatgtcatttatttctacaacaaggatattagaatgtaaatataggc-ttaatgtaaattatttattttttt--cgtcatttactttt-cgcagacc 20057513  T
Q  101 ttagaatgtaaataggcttttatgtaa 127  Q
     ||| |||||  |||||||| ||||||    
T  20057512 atagcatgtatctaggctttaatgtaa 20057486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 22073296 - 22073339
Alignment:
Q  1 ttttacgtcatttatttttgctgcaaggatattagaatgtaaat 44  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||    
T  22073296 ttttatgtcatttatttttgcagcaaggatattagaatgtaaat 22073339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 16815659 - 16815619
Alignment:
Q  93 cgcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  16815659 cgcagaccttagaatgtaaataggctttttatgtaatagtc 16815619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 16824414 - 16824374
Alignment:
Q  93 cgcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  16824414 cgcagaccttagaatgtaaataggctttttatgtaatagtc 16824374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 614631 - 614592
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  614631 gcagaccttagaatgtaaataggctttttatgtaatagtc 614592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 622551 - 622512
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  622551 gcagaccttagaatgtaaataggctttttatgtaatagtc 622512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 9130494 - 9130455
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9130494 gcagaccttagaatgtaaataggctttttatgtaatagtc 9130455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 9144330 - 9144291
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9144330 gcagaccttagaatgtaaataggctttttatgtaatagtc 9144291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 16324331 - 16324292
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  16324331 gcagaccttagaatgtaaataggctttttatgtaatagtc 16324292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 32 - 226
Target Start/End: Original strand, 297995 - 298188
Alignment:
Q  32 ttagaatgtaaattagggctttgatgtaaataatttattt--tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaata 129  Q
    ||||||||||||||||| ||| ||||||||||||||||||  | |||  |||||||| ||||| ||||||||||||||||||||||| |||| |||||||    
T  297995 ttagaatgtaaattaggcctt-gatgtaaataatttatttacttttcttgtcattta-ttttctgcagaccttagaatgtaaataggtttttttgtaata 298092  T
Q  130 gtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  298093 gt-gtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtggtggtccaacgccaccatgaggt 298188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 361541 - 361397
Alignment:
Q  82 atttacttttccgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgta 181  Q
    ||||| |||||||||||  ||||||| ||  || |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  361541 atttatttttccgcagattttagaatatatctaaggctttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgta 361442  T
Q  182 gtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||||||||||||||| || ||| |||||||| |||||||| ||||    
T  361441 gtttaggtcaaaggtgcttgtggtggtccaacgccaccataaggt 361397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 122705 - 122844
Alignment:
Q  55 atgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 153  Q
    ||||||||||||||||||  ||  |||||||| |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||     
T  122705 atgtaaataatttatttt--tcttgtcattta-ttttccgcagactttagaatgtatcataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgc- 122800  T
Q  154 tgtgtgtatgcctct-tatctgctttgtagtttaggtcaaaggtc 197  Q
     |||||||||||||| | | |||||| || ||||||| |||||||    
T  122801 -gtgtgtatgcctctctttatgctttataatttaggttaaaggtc 122844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 13101639 - 13101772
Alignment:
Q  93 cgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaa 192  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13101639 cgcagaccttagaatgtaaataggctttgatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaa 13101738  T
Q  193 aggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||||||||||| |||||||  |||||||||||||    
T  13101739 aggtcctcgtggtggtccaccgccaccatgaggt 13101772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 7945476 - 7945608
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||    
T  7945476 gcagaccttagaatgtaaataggcttttatgtattagtcgtaggtgcatgtgtgcgtgcatgtgtgtatgtctcttatctgctttgtagtttaggtaaaa 7945575  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||||||| |||||| |||||||||||||    
T  7945576 ggtcctcgtgattgtccaacgccaccatgaggt 7945608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 16361603 - 16361733
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||     
T  16361603 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtacatgtgtgcgtgcgtgtgtg--tgcctcttatctgctttgtagtttaggtcaat 16361700  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||| ||| |||||||| |||||||| ||||    
T  16361701 ggtccttgtggtggtccaacgccaccataaggt 16361733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 15878654 - 15878528
Alignment:
Q  100 cttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||| |    
T  15878654 cttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgtgttttatctgctttgtagtttaggtcaaaggtcat 15878555  T
Q  200 cgtgatggtccaatgccaccatgaggt 226  Q
     ||| |||||||| |||||||| ||||    
T  15878554 tgtggtggtccaacgccaccataaggt 15878528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 18216989 - 18217102
Alignment:
Q  113 taggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaa 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  18216989 taggcttttatgtaatagtcgtaggtgcatgtgtgtgtgcgtgtgtgtatgcctcttatctgctttgtagtctaggtcaaaggtccttgtgttggtccaa 18217088  T
Q  213 tgccaccatgaggt 226  Q
     |||||||||||||    
T  18217089 cgccaccatgaggt 18217102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 52 - 226
Target Start/End: Original strand, 14926303 - 14926467
Alignment:
Q  52 ttgatgtaaataatttattt---tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgc 148  Q
    ||||||||||||||||||||   | |||  |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||      
T  14926303 ttgatgtaaataatttatttatttcttcttgtcattta-ttttctgcagaccttagaatgtaaataggcttttatgtaatagt-gtaggtgcatgtgt-- 14926398  T
Q  149 gtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
            ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||    
T  14926399 --------gtgtatgcctcttatctgctttgtagtttaggtcaaaggtccttgtggtggtccaatacc-ccatgaggt 14926467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 22174390 - 22174190
Alignment:
Q  27 ggatattagaatgtaaattagggctttgatgtaaataatttattt-tattcccgtcatttacttttccgcagaccttagaatgta-aataggcttttatg 124  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||| | |||  ||| |||| ||||| ||||||||||||||||| |||||| |||||||    
T  22174390 ggatgttagaatgtaaattagg-ctttgatgtaattaatttatttattttcttgtcgttta-ttttctgcagaccttagaatgtataatagg-ttttatg 22174294  T
Q  125 taatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc--ctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatg 222  Q
    ||||||||||||||||||||||||||| ||||| ||||||  ||||||| | |||  ||||||||||||| |||||| ||| |||||||| ||| ||||     
T  22174293 taatagtcgtaggtgcatgtgtgcgtgtgtgtgggtatgcctctcttatttacttcatagtttaggtcaatggtcctggtggtggtccaacgcctccata 22174194  T
Q  223 aggt 226  Q
    ||||    
T  22174193 aggt 22174190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 17405 - 17608
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattt-tattcccgtcatttacttttccgcagaccttagaatgta-aataggcttt 120  Q
    |||||||| ||| ||||||||||||| |||||||||||||||||||||| | |||  |||||||| ||||| |||||| |||||||| | |||||| |||    
T  17405 gcaaggatgttataatgtaaattagg-ctttgatgtaaataatttatttgttttcttgtcattta-ttttctgcagacattagaatgcataatagg-ttt 17501  T
Q  121 tatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcct-cttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccacc 219  Q
    ||||||||||   |||||||||||||||||| ||| |||||||  | ||| | |||||  |||||||||||||||||||||||| |||||||| ||||||    
T  17502 tatgtaatagctttaggtgcatgtgtgcgtgtgtgcgtgtatgtttacttttatgcttaatagtttaggtcaaaggtcctcgtggtggtccaacgccacc 17601  T
Q  220 atgaggt 226  Q
    |||||||    
T  17602 atgaggt 17608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 27342356 - 27342189
Alignment:
Q  55 atgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaaa-taggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 153  Q
    ||||||||||||||||||  ||  |||||||| |||||||||||| ||||||||||   |||  ||||||||||||||||||||||||||||||||||||    
T  27342356 atgtaaataatttatttt--tcttgtcattta-ttttccgcagactttagaatgtatcgtagttttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 27342260  T
Q  154 tgtgtgtatgcctc-ttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatga 223  Q
    |||||||||||||| || | |||||| || ||||||| ||||||| | ||| || ||||| | ||||||||    
T  27342259 tgtgtgtatgcctctttttatgctttataatttaggttaaaggtctttgtggtgatccaacgtcaccatga 27342189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 44623321 - 44623433
Alignment:
Q  112 ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctc-ttatctgctttgtagtttaggtcaaaggtcctcgtgatggtcc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| || ||||||| ||||||| | ||| || |||    
T  44623321 ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctctttttatgctttataatttaggttaaaggtctttgtggtgatcc 44623420  T
Q  211 aatgccaccatga 223  Q
    || | ||||||||    
T  44623421 aacgtcaccatga 44623433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 25985880 - 25986011
Alignment:
Q  31 attagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaata 129  Q
    ||||||||||||  |||||  ||||||||||||||||||||| |||  |||||||| |||||||||||| ||| ||||||  ||||||||||||||||||    
T  25985880 attagaatgtaatctaggg--ttgatgtaaataatttatttttttcttgtcatttatttttccgcagacttta-aatgtatcataggcttttatgtaata 25985976  T
Q  130 gtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    || ||||||||||| ||||||| ||| ||||||||    
T  25985977 gttgtaggtgcatgggtgcgtgtgtgggtgtatgc 25986011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 16719505 - 16719420
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaaata 114  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||    |||  |||||||| ||||| |||||||||||||||||||||    
T  16719505 gcaaggatgttagaatgtaaattagg-ctttgatgtaaataatttat----ttcttgtcattta-ttttctgcagaccttagaatgtaaata 16719420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 15566567 - 15566506
Alignment:
Q  89 tttccgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtg 151  Q
    |||| ||||||||||||||||||||||| |||| |||||||||  ||||||||||||||||||    
T  15566567 tttctgcagaccttagaatgtaaataggattttttgtaatagt-ttaggtgcatgtgtgcgtg 15566506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 15579213 - 15579152
Alignment:
Q  89 tttccgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtg 151  Q
    |||| ||||||||||||||||||||||| |||| |||||||||  ||||||||||||||||||    
T  15579213 tttctgcagaccttagaatgtaaataggattttttgtaatagt-ttaggtgcatgtgtgcgtg 15579152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16361529 - 16361572
Alignment:
Q  1 ttttacgtcatttatttttgctgcaaggatattagaatgtaaat 44  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||    
T  16361529 ttttatgtcatttatttttgcagcaaggatattagaatgtaaat 16361572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 20841416 - 20841376
Alignment:
Q  93 cgcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  20841416 cgcagaccttagaatgtaaataggctttttatgtaatagtc 20841376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 22704846 - 22704886
Alignment:
Q  94 gcagaccttagaatgtaaataggc--ttttatgtaatagtc 132  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  22704846 gcagaccttagaatgtaaataggcttttttatgtaatagtc 22704886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 22713817 - 22713857
Alignment:
Q  94 gcagaccttagaatgtaaataggc--ttttatgtaatagtc 132  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  22713817 gcagaccttagaatgtaaataggcttttttatgtaatagtc 22713857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 8805112 - 8805245
Alignment:
Q  93 cgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaa 192  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8805112 cgcagaccttagaatgtaaataggctttgatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaa 8805211  T
Q  193 aggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||||||||||| |||||||  |||||||||||||    
T  8805212 aggtcctcgtggtggtccaccgccaccatgaggt 8805245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 8813512 - 8813645
Alignment:
Q  93 cgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaa 192  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813512 cgcagaccttagaatgtaaataggctttgatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaa 8813611  T
Q  193 aggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||||||||||| |||||||  |||||||||||||    
T  8813612 aggtcctcgtggtggtccaccgccaccatgaggt 8813645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 93 - 226
Target Start/End: Original strand, 15628558 - 15628691
Alignment:
Q  93 cgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaa 192  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15628558 cgcagaccttagaatgtaaataggctttgatgtaatagtcgtaggtgcatgtgtgcgtgcatgtgtgtatgcctcttatctgctttgtagtttaggtcaa 15628657  T
Q  193 aggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||||||||||| |||||||  |||||||||||||    
T  15628658 aggtcctcgtggtggtccaccgccaccatgaggt 15628691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 15621198 - 15621330
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15621198 gcagaccttagaatgtaaataggctttgatgtaatagtcgtaggtgcatgtgtgcatgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 15621297  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||||| |||||||  |||||||||||||    
T  15621298 ggtcctcgtggtggtccaccgccaccatgaggt 15621330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 19834724 - 19834840
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||     
T  19834724 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtacatgtgtgcgtgcgtgtgtg--tgcctcttatctgctttgtagtttaggtcaat 19834821  T
Q  194 ggtcctcgtgatggtccaa 212  Q
    |||||| ||| ||||||||    
T  19834822 ggtccttgtggtggtccaa 19834840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 5650459 - 5650329
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||||||||||||||||||||||||||||     
T  5650459 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggaacatgtgtgcgtgcgtgtgtg--tgcctcttatctgctttgtagtttaggtcaat 5650362  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||| ||| |||| ||| |||||||| ||||    
T  5650361 ggtccttgtggtggttcaacgccaccataaggt 5650329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 18886763 - 18886622
Alignment:
Q  55 atgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 153  Q
    |||||||||| |||||||  ||  |||||||| |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||| |||||    
T  18886763 atgtaaataacttatttt--tcttgtcattta-ttttccgcagactttagaatgtatcataggcttttatgtaatagtcgtaggtgcatgtgtgtgtgcg 18886667  T
Q  154 tgtgtgtatgcctc-ttatctgctttgtagtttaggtcaaaggtc 197  Q
    |||||||||||||| || | |||||| || ||||||| |||||||    
T  18886666 tgtgtgtatgcctctttttatgctttataatttaggttaaaggtc 18886622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 18891005 - 18890901
Alignment:
Q  55 atgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 153  Q
    ||||||||||||||||||  ||  |||||||| |||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  18891005 atgtaaataatttatttt--tcttgtcattta-ttttccgcagactttagaatgtatcataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 18890909  T
Q  154 tgtgtgta 161  Q
    ||||||||    
T  18890908 tgtgtgta 18890901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 18901188 - 18901084
Alignment:
Q  55 atgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 153  Q
    ||||||||||||||||||  ||  |||||||| |||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  18901188 atgtaaataatttatttt--tcttgtcattta-ttttccgcagactttagaatgtatcataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 18901092  T
Q  154 tgtgtgta 161  Q
    ||||||||    
T  18901091 tgtgtgta 18901084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 30063477 - 30063338
Alignment:
Q  55 atgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 153  Q
    ||||||||||||||||||  ||  |||||||| ||||||||| || ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  30063477 atgtaaataatttatttt--tcttgtcattta-ttttccgcaaactttagaatgtatcataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 30063381  T
Q  154 tgtgtgtatgcctct-tatctgctttgtagtttaggtcaaaggtc 197  Q
    |  |||||||||||| | | |||||| || ||||||| |||||||    
T  30063380 t--gtgtatgcctctctttatgctttataatttaggttaaaggtc 30063338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 4435134 - 4435235
Alignment:
Q  55 atgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 153  Q
    ||||||||||||||||||  ||  |||||||| |||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||||| |||||    
T  4435134 atgtaaataatttatttt--tcttgtcattta-ttttccgcagactttagaatgtatcataggcttttatgtagtagtcgtaggtgcatgtgtgtgtgcg 4435230  T
Q  154 tgtgt 158  Q
    |||||    
T  4435231 tgtgt 4435235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 4455925 - 4456026
Alignment:
Q  55 atgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 153  Q
    ||||||||||||||||||  ||  |||||||| |||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||||| |||||    
T  4455925 atgtaaataatttatttt--tcttgtcattta-ttttccgcagactttagaatgtatcataggcttttatgtagtagtcgtaggtgcatgtgtgtgtgcg 4456021  T
Q  154 tgtgt 158  Q
    |||||    
T  4456022 tgtgt 4456026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 15910687 - 15910757
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||| ||||||||    
T  15910687 gcagaccttagaatgtaaataggcttttatgtaatagttgtaggtgcatgggtgtgtgtgtgggtgtatgc 15910757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 15924930 - 15925000
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||| ||||||||    
T  15924930 gcagaccttagaatgtaaataggcttttatgtaatagttgtaggtgcatgggtgtgtgtgtgggtgtatgc 15925000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 15577987 - 15577919
Alignment:
Q  96 agaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||| ||||||||    
T  15577987 agaccttagaatgtaaataggcttttatgtaatagttgtaggtgcatgggtgtgtgtgtgggtgtatgc 15577919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 15609056 - 15608993
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtg 157  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||    
T  15609056 gcagaccttagaatgtaaataggcttttatgtaatagttgtaggtgcatgggtgtgtgtgtgtg 15608993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 18692453 - 18692511
Alignment:
Q  168 ttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||    
T  18692453 ttatatgctttgtagtttaggtcaaaggtccttgtggtggtccaacgccaccataaggt 18692511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 18707823 - 18707881
Alignment:
Q  168 ttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||    
T  18707823 ttatatgctttgtagtttaggtcaaaggtccttgtggtggtccaacgccaccataaggt 18707881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 18693655 - 18693792
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta-aataggctttt 121  Q
    |||||| |||||||||||||||||||  |   ||||||||    ||||||||||||||||||||||||  |||||||| ||| | ||| |||||| |||     
T  18693655 gcaagggtattagaatgtaaattaggtttgaaatgtaaat----tattttattcccgtcatttactttctcgcagaccatagcaagtataataggttttc 18693750  T
Q  122 atgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
     |||||||  | |||||||||||||||||| ||| ||||||||    
T  18693751 ttgtaata-acttaggtgcatgtgtgcgtgtgtgggtgtatgc 18693792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 21608624 - 21608667
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtcgtag 136  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  21608624 gcagaccttagaatgtaaataggctttttatgtaatagtcgtag 21608667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 21617252 - 21617295
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtcgtag 136  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  21617252 gcagaccttagaatgtaaataggctttttatgtaatagtcgtag 21617295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 5944763 - 5944724
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  5944763 gcagaccttagaatgtaaataggctttttatgtaatagtc 5944724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 5958875 - 5958836
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  5958875 gcagaccttagaatgtaaataggctttttatgtaatagtc 5958836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 11628653 - 11628614
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  11628653 gcagaccttagaatgtaaataggctttttatgtaatagtc 11628614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14253477 - 14253520
Alignment:
Q  1 ttttacgtcatttatttttgctgcaaggatattagaatgtaaat 44  Q
    ||||| ||||||||||||| | ||||||||||||||||||||||    
T  14253477 ttttatgtcatttatttttacagcaaggatattagaatgtaaat 14253520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 15527749 - 15527710
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  15527749 gcagaccttagaatgtaaataggctttttatgtaatagtc 15527710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 15536438 - 15536399
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  15536438 gcagaccttagaatgtaaataggctttttatgtaatagtc 15536399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 20602771 - 20602732
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  20602771 gcagaccttagaatgtaaataggctttttatgtaatagtc 20602732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 2254035 - 2253932
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta-aataggctttt 121  Q
    |||||| |||||||||||||||||||  |   ||||||||    ||||||||| ||||||||||||||  |||||||| ||| ||||| |||||| ||||    
T  2254035 gcaagggtattagaatgtaaattaggtttgaaatgtaaat----tattttatttccgtcatttactttctcgcagaccatagcatgtataataggttttt 2253940  T
Q  122 atgtaata 129  Q
     |||||||    
T  2253939 ttgtaata 2253932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 37254884 - 37254846
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  37254884 gcagaccttagaatgtaaataggtttttttgtaatagtc 37254846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 37264724 - 37264686
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  37264724 gcagaccttagaatgtaaataggtttttttgtaatagtc 37264686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 46392155 - 46392117
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagt 131  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  46392155 gcagaccttagaatgtaaataggctttttatgtaatagt 46392117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 46399903 - 46399865
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagt 131  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  46399903 gcagaccttagaatgtaaataggctttttatgtaatagt 46399865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 49965972 - 49965879
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta-aataggctt 119  Q
    ||||||||||||||||||||| || | |||| |||||||||||||||||  ||   ||| |||| ||||||||| ||||||||||||| |||||||||    
T  49965972 gcaaggatattagaatgtaaacta-gactttaatgtaaataatttatttattt--tgtccttta-ttttccgcataccttagaatgtataataggctt 49965879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 14253640 - 14253681
Alignment:
Q  180 tagtttaggtcaaaggtcctcgtgatggtccaatgccaccat 221  Q
    ||||||||||||| |||||| ||| |||||||||||||||||    
T  14253640 tagtttaggtcaatggtccttgtggtggtccaatgccaccat 14253681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0420 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0420
Description:

Target: scaffold0420; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 12389 - 12521
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12389 gcagactttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 12488  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||| ||| |||||||| |||||||||||||    
T  12489 ggtccttgtggtggtccaacgccaccatgaggt 12521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 22517616 - 22517417
Alignment:
Q  27 ggatattagaatgtaaattagggctttgatgtaaataatttattt-tattcccgtcatttacttt--tccgcagaccttagaatgtaaataggcttttat 123  Q
    |||| |||||||||||||||||  ||||||||||||||||||||| | |||  |||||||| |||  || ||||||||||||||||||||||||||||||    
T  22517616 ggatgttagaatgtaaattaggt-tttgatgtaaataatttatttattttcttgtcatttattttcttctgcagaccttagaatgtaaataggcttttat 22517518  T
Q  124 gtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatga 223  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||| || |||||||    
T  22517517 gtaatagtcgtaggtgcatgtgtg--tgcgtgtgtgtatgcctcttatttgctttatagtttaggtcaaaggtccttgtggtggtccaacgctaccatga 22517420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 21066006 - 21066138
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  21066006 gcagaccttagaatgtaaataggcttttatgtaatagccgtaggtgcatgagtgcgtgcgcgtgtgtatgcctcttatctgctttgtggtttaggtcaaa 21066105  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||||| |||||||| ||| |||||||||    
T  21066106 ggtcctcgtggtggtccaacgccgccatgaggt 21066138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 17332348 - 17332247
Alignment:
Q  96 agaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaagg 195  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  17332348 agaccttagaatgtaaataggcttttgtgtaatagtcgtaggtgcatgtgtgtgtgcgggtgtgtatgcctcttatctgctttgtagtttaggttaaagg 17332249  T
Q  196 tc 197  Q
    ||    
T  17332248 tc 17332247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 164
Target Start/End: Original strand, 22935551 - 22935684
Alignment:
Q  32 ttagaatgtaaattagggctttgatgtaaataatttattt---tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaat 128  Q
    ||||||||||||||||| ||| ||||||||||||||||||   | |||  |||||||| ||||  ||||||||||||||||||||||| |||| ||||||    
T  22935551 ttagaatgtaaattaggcctt-gatgtaaataatttatttactttttcttgtcatttatttttttgcagaccttagaatgtaaataggtttttttgtaat 22935649  T
Q  129 agtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||  |||||||||||||||||| ||| ||||||||    
T  22935650 agt-ttaggtgcatgtgtgcgtgtgtgggtgtatgc 22935684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 164
Target Start/End: Original strand, 22941515 - 22941648
Alignment:
Q  32 ttagaatgtaaattagggctttgatgtaaataatttattt---tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaat 128  Q
    ||||||||||||||||| ||| ||||||||||||||||||   | |||  |||||||| ||||  ||||||||||||||||||||||| |||| ||||||    
T  22941515 ttagaatgtaaattaggcctt-gatgtaaataatttatttactttttcttgtcatttatttttttgcagaccttagaatgtaaataggtttttttgtaat 22941613  T
Q  129 agtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||  |||||||||||||||||| ||| ||||||||    
T  22941614 agt-ttaggtgcatgtgtgcgtgtgtgggtgtatgc 22941648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 164
Target Start/End: Original strand, 22955410 - 22955543
Alignment:
Q  32 ttagaatgtaaattagggctttgatgtaaataatttattt---tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaat 128  Q
    ||||||||||||||||| ||| ||||||||||||||||||   | |||  |||||||| ||||  ||||||||||||||||||||||| |||| ||||||    
T  22955410 ttagaatgtaaattaggcctt-gatgtaaataatttatttactttttcttgtcatttatttttttgcagaccttagaatgtaaataggtttttttgtaat 22955508  T
Q  129 agtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||  |||||||||||||||||| ||| ||||||||    
T  22955509 agt-ttaggtgcatgtgtgcgtgtgtgggtgtatgc 22955543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 226
Target Start/End: Original strand, 29755583 - 29755757
Alignment:
Q  48 ggctttgatgtaaataatttattt-tattcccgtcatttacttttccgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtgcatgtg 145  Q
    |||||||||||||||||||||||| | |||  |||||||| ||||||||||||| ||| ||||| ||||||  ||| ||||||||   ||||||||||||    
T  29755583 ggctttgatgtaaataatttatttattttcttgtcattta-ttttccgcagaccatagcatgtataatagggctttttgtaatagctttaggtgcatgtg 29755681  T
Q  146 tgcgtgcgtgtgtgtatgcctcttatctgcttt-gtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||||||    | ||| | ||||||||  ||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  29755682 tgcgtg----tatgtttacctcttat--gctttagtagtttaggtcaaaggtcctcgtggtggtccaacgccaccataaggt 29755757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21065936 - 21065979
Alignment:
Q  1 ttttacgtcatttatttttgctgcaaggatattagaatgtaaat 44  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||    
T  21065936 ttttatgtcatttatttttgcagcaaggatattagaatgtaaat 21065979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 21069738 - 21069808
Alignment:
Q  70 tttattcccgtcatttacttttccgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtg 139  Q
    |||||| ||||||||||||||  |||||||| ||| ||||| |||||| |||||||||||||| |||||||    
T  21069738 tttatttccgtcatttactttctcgcagaccatagcatgtataataggtttttatgtaatagttgtaggtg 21069808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 12369245 - 12369197
Alignment:
Q  116 gcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    ||||||||||||||||||||| |||||| ||||||| ||| ||||||||    
T  12369245 gcttttatgtaatagtcgtagatgcatgggtgcgtgtgtgggtgtatgc 12369197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 12375887 - 12375926
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  12375887 gcagaccttagaatgtaaataggctttttatgtaatagtc 12375926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 12389714 - 12389753
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  12389714 gcagaccttagaatgtaaataggctttttatgtaatagtc 12389753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 30797136 - 30797183
Alignment:
Q  179 gtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||||||||||| ||||||||||||| |||||||| |||||||| ||||    
T  30797136 gtagtttaggttaaaggtcctcgtggtggtccaacgccaccataaggt 30797183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 42016419 - 42016287
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  42016419 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgttcgtgcgtgtgtgtatgactcttatctgctttgtagtttaggtcaaa 42016320  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||  ||| |||||||| |||||||||||||    
T  42016319 ggtccctgtggtggtccaacgccaccatgaggt 42016287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 15685130 - 15685261
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  15685130 gcagaccttagaacgtaaataggcttttatgtaatagtcgtaggtgcatgtctgcgtgcgtgtgtgtatgcct-ttatctgcgttgtagtttaggtcaaa 15685228  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||||| ||||| || |||||||||||||    
T  15685229 ggtcctcgtggtggtctaacgccaccatgaggt 15685261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 4892219 - 4892087
Alignment:
Q  31 attagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta-aataggcttttatgtaata 129  Q
    ||||||||||||  |||||  ||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  4892219 attagaatgtaatctaggg--ttgatgtaaataatttatttttttcttgtcatttacttttccgcagactttagaatgtatcataggcttttatgtaata 4892122  T
Q  130 gtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    ||||||| |||||| ||||||| ||| ||||||||    
T  4892121 gtcgtagatgcatgggtgcgtgtgtgggtgtatgc 4892087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 17014792 - 17014722
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||    
T  17014792 gcagaccttataatgtaaataggcttttatgtaatagtcgtaggtgcatgggtgtgtgtgtgggtgtatgc 17014722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 8911952 - 8911844
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattt--tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttt 120  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||||||||  | |||  |||||||| ||||| ||||||||||||||||||||| | |||    
T  8911952 gcaaagatgttagaatgtaaattagg-ctttgatgtaaataatttatttacttttcttgtcattta-ttttctgcagaccttagaatgtaaatatgattt 8911855  T
Q  121 tatgtaatagt 131  Q
    | |||||||||    
T  8911854 tttgtaatagt 8911844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 19243057 - 19242951
Alignment:
Q  82 atttacttttccgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatc-tgctttg 179  Q
    ||||| ||| || ||||| |||||||||| |||||||||  || |||||||| ||||||||||| |||||||||||||||||| |||||||| | |||||    
T  19243057 atttattttgccacagactttagaatgtataataggctta-atataatagtcttaggtgcatgtctgcgtgcgtgtgtgtatgtctcttatcttactttg 19242959  T
Q  180 tagtttag 187  Q
    ||||||||    
T  19242958 tagtttag 19242951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 15765491 - 15765407
Alignment:
Q  24 caaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta 110  Q
    ||||||||||||||||||||||| || ||| |||||||||||| ||| | |||  |||||||| |||||||||||||||||||||||    
T  15765491 caaggatattagaatgtaaatta-ggttttaatgtaaataattcattattttcttgtcattta-ttttccgcagaccttagaatgta 15765407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 5647871 - 5647735
Alignment:
Q  32 ttagaatgtaaattagggctttgatgtaaataatttattt---tattcccgtcatttacttttcc--gcagaccttagaatgtaaatagg-cttttatgt 125  Q
    ||||||||||||||||| ||| ||||||||||||||||||   | |||  |||||||| ||||    |||||||||||||||||||||||  |||| |||    
T  5647871 ttagaatgtaaattaggcctt-gatgtaaataatttatttactttttcttgtcatttatttttttttgcagaccttagaatgtaaataggttttttttgt 5647773  T
Q  126 aatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    ||||||  |||||||||||||||||| ||| ||||||||    
T  5647772 aatagt-ttaggtgcatgtgtgcgtgtgtgggtgtatgc 5647735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 4850762 - 4850800
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4850762 gcagaccttagaatgtaaataggcttttatgtaatagtc 4850800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 224
Target Start/End: Original strand, 15821926 - 15822047
Alignment:
Q  88 ttttccgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagttta 186  Q
    |||| ||||||| |||||||||| |||||| ||||||||||||||  |||||||||          |||||||||||||||||||||||||||||         
T  15821926 tttttcgcagactttagaatgtataataggtttttatgtaatagttttaggtgcat----------gtgtgtgtatgcctcttatctgctttgta----- 15822010  T
Q  187 ggtcaaaggtcctcgtgatggtccaatgccaccatgag 224  Q
     |||||||||||| ||| |||||||| |||| ||||||    
T  15822011 -gtcaaaggtccttgtggtggtccaacgccaacatgag 15822047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 19881415 - 19881357
Alignment:
Q  94 gcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtgcatgtgtgcgtg 151  Q
    ||||||| ||||||||| |||||||||||||| ||||||  ||||||||||||||||||    
T  19881415 gcagaccctagaatgtataataggcttttatgaaatagttttaggtgcatgtgtgcgtg 19881357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 30363827 - 30363789
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  30363827 gcagaccttagaatgtaaataggattttatgtaatagtc 30363789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 30377892 - 30377854
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  30377892 gcagaccttagaatgtaaataggattttatgtaatagtc 30377854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 3335288 - 3335211
Alignment:
Q  88 ttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||| ||||| | ||||||||||  ||||||||||||||||| || ||||| ||||||||||||| ||| ||||||||    
T  3335288 tttttcgcaggctttagaatgtatcataggcttttatgtaatcgttgtaggggcatgtgtgcgtgtgtgggtgtatgc 3335211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 35076620 - 35076668
Alignment:
Q  173 tgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccat 221  Q
    ||||||||||||||||||||| ||||| ||| |||||||| ||||||||    
T  35076620 tgctttgtagtttaggtcaaatgtccttgtggtggtccaacgccaccat 35076668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 8811291 - 8811330
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  8811291 gcagaccttagaatgtaaataggctttttatgtaatagtc 8811330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 8819105 - 8819144
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  8819105 gcagaccttagaatgtaaataggctttttatgtaatagtc 8819144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 9461795 - 9461834
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9461795 gcagaccttagaatgtaaataggctttttatgtaatagtc 9461834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 9475553 - 9475592
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9475553 gcagaccttagaatgtaaataggctttttatgtaatagtc 9475592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 16387272 - 16387233
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  16387272 gcagaccttagaatgtaaataggctttttatgtaatagtc 16387233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 16401399 - 16401360
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  16401399 gcagaccttagaatgtaaataggctttttatgtaatagtc 16401360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 23877368 - 23877329
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  23877368 gcagaccttagaatgtaaataggctttttatgtaatagtc 23877329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 23886224 - 23886185
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  23886224 gcagaccttagaatgtaaataggctttttatgtaatagtc 23886185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 3082323 - 3082399
Alignment:
Q  28 gatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaat 107  Q
    |||||||||||||||| ||| |  ||||||||||||||||||||| |||  |||||||| ||| ||||| || |||||||    
T  3082323 gatattagaatgtaaactagag--ttgatgtaaataatttatttt-ttcttgtcatttattttcccgcacactttagaat 3082399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 35091143 - 35091191
Alignment:
Q  173 tgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccat 221  Q
    ||||||||| ||||||||||| || |||||| |||||||| ||||||||    
T  35091143 tgctttgtaatttaggtcaaatgttctcgtggtggtccaacgccaccat 35091191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 39740 - 39610
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  39740 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgt--gtgtgtgtatgcctcttatctgctttgtagttcaggtcaaa 39643  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||||| |||||||| |||||||| ||||    
T  39642 ggtcctcgtggtggtccaacgccaccataaggt 39610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 6196673 - 6196477
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaaataggctttta 122  Q
    |||||||||||||||||||| ||||| |||  ||||||||||||     |||| ||||| |||| ||   ||||||||||||||||||||||||||||||    
T  6196673 gcaaggatattagaatgtaatttaggtcttc-atgtaaataattg----tatttccgtcgtttatttcctcgcagaccttagaatgtaaataggctttta 6196579  T
Q  123 tgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatg 222  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||| ||| ||||| || |||||||||    
T  6196578 tgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtg--tgcctcttatctgctttgtagtttaggtcaaagacccttgtggtggtcgaacgccaccatg 6196481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 6204524 - 6204360
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaaataggctttta 122  Q
    |||||||||||||||||||| ||||| |||  |||||||||||||    |||| ||||| |||| ||   ||||||||||||||||||||||||||||||    
T  6204524 gcaaggatattagaatgtaatttaggtcttc-atgtaaataattt----tatttccgtcttttatttcctcgcagaccttagaatgtaaataggctttta 6204430  T
Q  123 tgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaag 194  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  6204429 tgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtg--tgcctcttatctgctttgtagtttaggtcaaag 6204360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 45498405 - 45498539
Alignment:
Q  94 gcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatc-tgctttgtagtttaggtca 191  Q
    |||||| ||||||||||  ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||    
T  45498405 gcagactttagaatgtatcataggcttttatgtaatagccataggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatcttactttgtagcttaggtca 45498504  T
Q  192 aaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||| ||| ||||| || |||||||| ||||    
T  45498505 aaggtccttgtggtggtcaaacgccaccataaggt 45498539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 16886166 - 16886306
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta-aataggctttt 121  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||| ||  ||||| |||||| ||||    
T  16886166 gcaaggatgtaagaatgtaaattagggctttgatgtaaataatttattttatttccgtcatttactttctcgcagaccataacatgtataatagg-tttt 16886264  T
Q  122 atgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
     |||||||  | |||||||||||||||||| ||| ||||||||    
T  16886265 ttgtaata-acttaggtgcatgtgtgcgtgtgtgggtgtatgc 16886306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 20519660 - 20519715
Alignment:
Q  96 agaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtg 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20519660 agaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtg 20519715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 39455679 - 39455788
Alignment:
Q  52 ttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta-aatagg-cttttatgtaatagtcgtaggtgcatgtgtgcg 149  Q
    ||||||||||||||||||||| ||   |||||||| |||||||||||| ||||||||||  ||||| |||||||||||||||||||||||||  | || |    
T  39455679 ttgatgtaaataatttattttctttttgtcatttatttttccgcagactttagaatgtatcataggccttttatgtaatagtcgtaggtgcaaatatggg 39455778  T
Q  150 tgcgtgtgtg 159  Q
    ||||||||||    
T  39455779 tgcgtgtgtg 39455788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 20978715 - 20978646
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||||||||||||||||||||||||||| ||||||| |  |||||||||||||||||| ||| ||||||||    
T  20978715 gcagaccttagaatgtaaataggcttttttgtaataat-ttaggtgcatgtgtgcgtgtgtgggtgtatgc 20978646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 28426177 - 28426280
Alignment:
Q  70 tttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctct 168  Q
    |||||| |||||||||||| |  |||||||| ||| || ||  ||||| ||| ||||||||||  ||||||||||||||||||| ||||||||||||| |    
T  28426177 tttatttccgtcatttactatctcgcagaccatagcatatatcatagg-tttaatgtaatagttttaggtgcatgtgtgcgtgcatgtgtgtatgccttt 28426275  T
Q  169 tatct 173  Q
    |||||    
T  28426276 tatct 28426280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20978785 - 20978742
Alignment:
Q  1 ttttacgtcatttatttttgctgcaaggatattagaatgtaaat 44  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||    
T  20978785 ttttatgtcatttatttttgcagcaaggatattagaatgtaaat 20978742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 44909223 - 44909156
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtat 162  Q
    |||||||||||||||||||||||| || |  |||||||  ||||||| |||||||||| ||||||||||    
T  44909223 gcagaccttagaatgtaaataggc-ttaacctaatagttttaggtgcgtgtgtgcgtgtgtgtgtgtat 44909156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 5622939 - 5622900
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  5622939 gcagaccttagaatgtaaataggctttttatgtaatagtc 5622900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 5637078 - 5637039
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  5637078 gcagaccttagaatgtaaataggctttttatgtaatagtc 5637039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13187068 - 13187115
Alignment:
Q  1 ttttacgtcatttatttttgctgcaaggatattagaatgtaaattagg 48  Q
    ||||| ||||||||||||| | |||||| |||||||||||||||||||    
T  13187068 ttttatgtcatttatttttacagcaagggtattagaatgtaaattagg 13187115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0378 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0378
Description:

Target: scaffold0378; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 2268 - 2398
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||    
T  2268 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgt--gtgtgtgtatgcctcttatctgctttgtagttcaggtcaaa 2365  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||||||| || |||||||| |||||||| ||||    
T  2366 ggtcctcctggtggtccaacgccaccataaggt 2398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 5079 - 5211
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||    
T  5079 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgtgtgcgtgtgtgtatgtcttttatctgctttgtagtttaggtcaaa 5178  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||| | ||| |||||||| |||||||| ||||    
T  5179 ggtcattgtggtggtccaacgccaccataaggt 5211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 15508 - 15312
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaaataggctttta 122  Q
    |||||||||||||||||||| ||||| |||  |||||||||||||    |||| ||||| |||| |    ||||||||||||||||||||||||||||||    
T  15508 gcaaggatattagaatgtaatttaggtctta-atgtaaataattt----tatttccgtcgtttattccctcgcagaccttagaatgtaaataggctttta 15414  T
Q  123 tgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatg 222  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||  ||| ||| ||||| || |||||||||    
T  15413 tgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtg--tgcctcttatttgctttgtagtttaggtcaaagacccttgtggtggtcgaacgccaccatg 15316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 24484205 - 24484073
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaa 193  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| ||||||||||||||||| |||    
T  24484205 gcagaccttagaatgtaaataggcttttatgtaatagtcataggtgcatgtgcgcgtgcgtgtgtgtatgccttttatatgctttgtagtttaggttaaa 24484106  T
Q  194 ggtcctcgtgatggtccaatgccaccatgaggt 226  Q
     ||||| ||| |||||||| |||||||| ||||    
T  24484105 tgtccttgtggtggtccaacgccaccataaggt 24484073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 20734558 - 20734697
Alignment:
Q  88 ttttccgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcct-cttatctgctttgtagttt 185  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||   |||||||||||||||||| ||| |||||||  | ||| | ||||| |||||||    
T  20734558 ttttctgcagaccttagaatgtataatagg-ttttatgtaatagctttaggtgcatgtgtgcgtgtgtgcgtgtatgtttacttttatgcttagtagttt 20734656  T
Q  186 aggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||| |||||||||||||| ||||||||  ||||||| ||||    
T  20734657 aggacaaaggtcctcgtggtggtccaacaccaccataaggt 20734697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 21474084 - 21473950
Alignment:
Q  32 ttagaatgtaaattagggctttgatgtaaataatttattt---tattcccgtcatttacttttccgcagaccttagaatgtaaatagg-cttttatgtaa 127  Q
    ||||||||||||||||| ||| ||||||||||||||||||   | |||   ||||||| ||||  |||||||||||||||||||||||  |||| |||||    
T  21474084 ttagaatgtaaattaggcctt-gatgtaaataatttatttactttttcttatcatttatttttttgcagaccttagaatgtaaataggttttttttgtaa 21473986  T
Q  128 tagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    ||||  |||||||||||||||||| ||| ||||||||    
T  21473985 tagt-ttaggtgcatgtgtgcgtgtgtgggtgtatgc 21473950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 27807231 - 27807103
Alignment:
Q  27 ggatattagaatgtaaattagggctttgatgtaaataatttattt-tattcccgtcatttacttttccgcagaccttagaatgta-aataggcttttatg 124  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||| | |||  |||||||| ||||| ||||||||||||||||| |||||| |||||      
T  27807231 ggatgttagaatgtaaattagg-ctttgatgtaaataaattatttattttcttgtcattta-ttttctgcagaccttagaatgtataatagg-ttttacc 27807135  T
Q  125 taatagtcgtaggtgcatgtgtgcgtgcgtgt 156  Q
    ||||||   |||||||||||||||||| ||||    
T  27807134 taatagctttaggtgcatgtgtgcgtgtgtgt 27807103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 12306473 - 12306435
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  12306473 gcagaccttagaatgtaaataggtttttatgtaatagtc 12306435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 20726733 - 20726786
Alignment:
Q  173 tgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||||| ||||||||||||||||||||||||| | |||||| |||||||| ||||    
T  20726733 tgcttagtagtttaggtcaaaggtcctcgtggtagtccaacgccaccataaggt 20726786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 20739631 - 20739684
Alignment:
Q  173 tgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||||| ||||||||||||||||||||||||| | |||||| |||||||| ||||    
T  20739631 tgcttagtagtttaggtcaaaggtcctcgtggtagtccaacgccaccataaggt 20739684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 14890651 - 14890557
Alignment:
Q  70 tttattcccgtcatttacttttccgcagaccttagaatgtaaataggcttt-tatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||||| ||||||||||||||   ||||||||||||||||||||||  ||| | |||||||||  |||||||||| ||| ||| ||| ||||||||    
T  14890651 tttatttccgtcatttactttcttgcagaccttagaatgtaaatagtttttatttgtaatagt-ttaggtgcatgggtgtgtgtgtgggtgtatgc 14890557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15448969 - 15448926
Alignment:
Q  1 ttttacgtcatttatttttgctgcaaggatattagaatgtaaat 44  Q
    ||||| ||||||||||||| | ||||||||||||||||||||||    
T  15448969 ttttatgtcatttatttttacagcaaggatattagaatgtaaat 15448926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 23266759 - 23266720
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  23266759 gcagaccttagaatgtaaataggctttttatgtaatagtc 23266720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 23640959 - 23640913
Alignment:
Q  180 tagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    ||||||||||||||| |||| ||| |||||||| |||||||||||||    
T  23640959 tagtttaggtcaaagatccttgtggtggtccaaggccaccatgaggt 23640913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 39630250 - 39630212
Alignment:
Q  95 cagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  39630250 cagaccttagaatgtaaataggctttttatgtaatagtc 39630212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 39639801 - 39639763
Alignment:
Q  95 cagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  39639801 cagaccttagaatgtaaataggctttttatgtaatagtc 39639763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 52 - 226
Target Start/End: Complemental strand, 27773 - 27609
Alignment:
Q  52 ttgatgtaaataatttattt--tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcg 149  Q
    ||||||||||||||||||||  | |||  |||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||           
T  27773 ttgatgtaaataatttatttatttttcttgtcattta-ttttctgcagaccttagagtgtaaataggcttttatgtaatagtcgtaggtgcat------- 27682  T
Q  150 tgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
       | ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||    
T  27681 ---gcgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtccttgtggtggtccaatacc-ccatgaggt 27609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 52 - 226
Target Start/End: Original strand, 554 - 718
Alignment:
Q  52 ttgatgtaaataatttattt---tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgc 148  Q
    ||||||||||||||||||||   | |||  |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||      
T  554 ttgatgtaaataatttatttatttcttcttgtcattta-ttttctgcagaccttagaatgtaaataggcttttatgtaatagt-gtaggtgcatgtgt-- 649  T
Q  149 gtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
            ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||    
T  650 --------gtgtatgcctcttatctgctttgtagtttaggtcaaaggtccttgtggtggtccaatacc-ccatgaggt 718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 52 - 226
Target Start/End: Original strand, 1151 - 1315
Alignment:
Q  52 ttgatgtaaataatttattt---tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgc 148  Q
    ||||||||||||||||||||   | |||  |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||      
T  1151 ttgatgtaaataatttatttatttcttcttgtcattta-ttttctgcagaccttagaatgtaaataggcttttatgtaatagt-gtaggtgcatgtgt-- 1246  T
Q  149 gtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
            ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||    
T  1247 --------gtgtatgcctcttatctgctttgtagtttaggtcaaaggtccttgtggtggtccaatacc-ccatgaggt 1315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 52 - 226
Target Start/End: Complemental strand, 25449257 - 25449093
Alignment:
Q  52 ttgatgtaaataatttattt---tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgc 148  Q
    ||||||||||||||||||||   | |||  |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  25449257 ttgatgtaaataatttatttatttcttcttgtcattta-ttttctgcagaccttagaatgtaaataggcttttatgtaatagt-gtaggtgcatgtgtg- 25449161  T
Q  149 gtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
             |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||    
T  25449160 ---------tgtatgcctcttatctgctttgtagtttaggtcaaaggtccttgtggtggtccaatacc-ccatgaggt 25449093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 18956618 - 18956730
Alignment:
Q  111 aataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtcc 210  Q
    |||||| |||||||||||||   |||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||    
T  18956618 aataggtttttatgtaatagctttaggtgtat-tgtgtgtgcgtgtgtgtatgcctcttatctcctttgtagtttaggtcaaaggtccttgtggtggtcc 18956716  T
Q  211 aatgccaccatgag 224  Q
    || |||||||||||    
T  18956717 aacgccaccatgag 18956730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 26547213 - 26547079
Alignment:
Q  32 ttagaatgtaaattagggctttgatgtaaataatttattt---tattcccgtcatttacttttcc-gcagaccttagaatgtaaataggcttttatgtaa 127  Q
    ||||||||||||||||| ||| ||||||||||||||||||   | |||  |||||||| ||||   ||||||||||||||||||||||| |||| |||||    
T  26547213 ttagaatgtaaattaggcctt-gatgtaaataatttatttactttttcttgtcatttattttttttgcagaccttagaatgtaaataggtttttttgtaa 26547115  T
Q  128 tagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    ||||  |||||||||||||||||| ||| ||||||||    
T  26547114 tagt-ttaggtgcatgtgtgcgtgtgtgggtgtatgc 26547079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 23576134 - 23575993
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattt--tattcccgtcatttacttttccgcagaccttagaatgtaaatagg--ct 118  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||  | |||  ||||||||  |||| ||| ||||||| |||||||||||   |    
T  23576134 gcaaggatgttagaatgtaaattagg-ctttgatgtaaataatttatttacttttcttgtcattta--tttctgcataccttaggatgtaaataggtttt 23576038  T
Q  119 tttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    ||| |||||||||  |||||||||||||||||| ||| ||||||||    
T  23576037 tttttgtaatagt-ttaggtgcatgtgtgcgtgtgtgggtgtatgc 23575993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 33313240 - 33313137
Alignment:
Q  70 tttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctct 168  Q
    |||||| ||||||||||||||  |||||||| ||| |||||  ||||| ||| ||||||||||  |||||||||||||||||||||| | |||||||| |    
T  33313240 tttatttccgtcatttactttctcgcagaccatagcatgtatcatagg-tttaatgtaatagttttaggtgcatgtgtgcgtgcgtgcgagtatgccttt 33313142  T
Q  169 tatct 173  Q
    |||||    
T  33313141 tatct 33313137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 173
Target Start/End: Original strand, 33303933 - 33304036
Alignment:
Q  70 tttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctct 168  Q
    |||||| ||||||||||||||  |||||||| ||| |||||  ||||| ||| ||||||||||  ||||||||||| || ||||||| |||||||||| |    
T  33303933 tttatttccgtcatttactttctcgcagaccatagcatgtatcatagg-tttaatgtaatagttttaggtgcatgtctgtgtgcgtgcgtgtatgccttt 33304031  T
Q  169 tatct 173  Q
    |||||    
T  33304032 tatct 33304036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 15778431 - 15778393
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  15778431 gcagaccttagaatgtaaataggtttttatgtaatagtc 15778393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 15792666 - 15792628
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  15792666 gcagaccttagaatgtaaataggtttttatgtaatagtc 15792628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 25676521 - 25676418
Alignment:
Q  2 tttacgtcatttatttttgctgcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagacct 101  Q
    |||| ||||||||||||| | ||||||||||||||||||||||   ||| || |||||||| |||||||   || ||||||||||||||| ||||||||     
T  25676521 tttatgtcatttatttttacagcaaggatattagaatgtaaatataggc-ttaatgtaaattatttatt---tttccgtcatttactttt-cgcagacca 25676427  T
Q  102 tagaatgta 110  Q
    ||| |||||    
T  25676426 tagcatgta 25676418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 36370005 - 36369967
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  36370005 gcagatcttagaatgtaaataggcttttatgtaatagtc 36369967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 36383933 - 36383895
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  36383933 gcagatcttagaatgtaaataggcttttatgtaatagtc 36383895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 36994668 - 36994630
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  36994668 gcagatcttagaatgtaaataggcttttatgtaatagtc 36994630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 37008606 - 37008568
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  37008606 gcagatcttagaatgtaaataggcttttatgtaatagtc 37008568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 7253894 - 7253855
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  7253894 gcagaccttagaatgtaaataggctttttatgtaatagtc 7253855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 7261337 - 7261298
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  7261337 gcagaccttagaatgtaaataggctttttatgtaatagtc 7261298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 7787697 - 7787736
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  7787697 gcagaccttagaatgtaaataggctttttatgtaatagtc 7787736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 7795547 - 7795586
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  7795547 gcagaccttagaatgtaaataggctttttatgtaatagtc 7795586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 11938418 - 11938379
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  11938418 gcagaccttagaatgtaaataggctttttatgtaatagtc 11938379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 11952342 - 11952303
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  11952342 gcagaccttagaatgtaaataggctttttatgtaatagtc 11952303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 12386143 - 12386104
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  12386143 gcagaccttagaatgtaaataggctttttatgtaatagtc 12386104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 12394836 - 12394797
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  12394836 gcagaccttagaatgtaaataggctttttatgtaatagtc 12394797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 21689413 - 21689452
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  21689413 gcagaccttagaatgtaaataggctttttatgtaatagtc 21689452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 21697332 - 21697371
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  21697332 gcagaccttagaatgtaaataggctttttatgtaatagtc 21697371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 31512535 - 31512574
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  31512535 gcagaccttagaatgtaaataggctttttatgtaatagtc 31512574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 31526660 - 31526699
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  31526660 gcagaccttagaatgtaaataggctttttatgtaatagtc 31526699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 17949318 - 17949356
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  17949318 gcagaccttagaatgtaaataggtttttttgtaatagtc 17949356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 17963207 - 17963245
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtc 132  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  17963207 gcagaccttagaatgtaaataggtttttttgtaatagtc 17963245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 21727822 - 21727753
Alignment:
Q  71 ttattcccgtcatttacttttccgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtg 139  Q
    ||||| ||||||||||||||  |||||||| ||| ||||| |||||| |||| ||||||||| |||||||    
T  21727822 ttatttccgtcatttactttctcgcagaccatagcatgtataatagggttttttgtaatagttgtaggtg 21727753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 21807307 - 21807238
Alignment:
Q  71 ttattcccgtcatttacttttccgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtg 139  Q
    ||||| ||||||||||||||  |||||||| ||| ||||| |||||| |||| ||||||||| |||||||    
T  21807307 ttatttccgtcatttactttctcgcagaccatagcatgtataatagggttttttgtaatagttgtaggtg 21807238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 29902589 - 29902675
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattt-tattcccgtcatttacttttccgcagaccttagaatgta 110  Q
    ||||| ||||||||||| |||||| | ||||||||||||||||| |||| |||||  |||||||| ||||| ||||||| ||| |||||    
T  29902589 gcaagaatattagaatgcaaattaag-ctttgatgtaaataattcatttatattcttgtcattta-ttttctgcagaccatagcatgta 29902675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 14767 - 14846
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatct 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14767 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtacatgtgtgcgtgcgtgtgtgtatgcctcttatct 14846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 15063 - 15135
Alignment:
Q  100 cttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatc 172  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15063 cttagaatgtaaataggcttttatgtaatagtcgtaggtacatgtgtgcgtgcgtgtgtgtatgcctcttatc 15135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 14845 - 14918
Alignment:
Q  100 cttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatct 173  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14845 cttagaatgtaaataagcttttatgtaatagtcgtaggtacatgtgtgcgtgcgtgtgtgtatgcctcttatct 14918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 14927 - 14994
Alignment:
Q  106 atgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatct 173  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  14927 atgtaaataggcttttatgtaatagtcgtaggtacatgtgtgcatgcgtgtgtgtatgcctcttatct 14994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 14993 - 15064
Alignment:
Q  100 cttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatct 173  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  14993 cttagaatgtaaataggcttttatgtaatagtcgtaggtacatgtgtgcgtgc--gtgtgtatgcctcttatct 15064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 57103 - 57306
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattt-tattcccgtcatttacttttccgcagaccttagaatgta-aataggcttt 120  Q
    |||||||| ||| ||||||||||||| |||||||||||||||||||||| | |||  |||||||| ||||| |||||| |||||||| | |||||| |||    
T  57103 gcaaggatgttataatgtaaattagg-ctttgatgtaaataatttatttgttttcttgtcattta-ttttctgcagacattagaatgcataatagg-ttt 57199  T
Q  121 tatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcct-cttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccacc 219  Q
    ||||||||||   |||||||||||||||||| ||| |||||||  | ||| | |||||  |||||||||||||||||||||||| |||||||| ||||||    
T  57200 tatgtaatagctttaggtgcatgtgtgcgtgtgtgcgtgtatgtttacttttatgcttaatagtttaggtcaaaggtcctcgtggtggtccaacgccacc 57299  T
Q  220 atgaggt 226  Q
    |||||||    
T  57300 atgaggt 57306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 3926 - 3814
Alignment:
Q  55 atgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcg 153  Q
    ||||||||||||||||||  ||  |||||||| |||||||||||| ||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  3926 atgtaaataatttatttt--tcttgtcattta-ttttccgcagactttagaatgtatcataggcttttttgtaatagtcgtaggtgcatgtgtgcgtgcg 3830  T
Q  154 tgtgtgtatgcctctt 169  Q
    ||||||||||||||||    
T  3829 tgtgtgtatgcctctt 3814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 12904 - 12707
Alignment:
Q  27 ggatattagaatgtaaattagggctttgatgtaaataatttattt-tattcccgtcatttacttttccgcagaccttagaatgta-aataggcttttatg 124  Q
    |||| |||||||||||||||||  |||||||||| | |||||||| | |||  ||| |||| ||||| ||||||||||||||||| |||||| |||||||    
T  12904 ggatcttagaatgtaaattaggt-tttgatgtaatttatttatttattttcttgtcgttta-ttttctgcagaccttagaatgtataatagg-ttttatg 12808  T
Q  125 taatagtcgtaggtgcatgtgtgc--gtgcgtgtgtgtatgc--ctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccacca 220  Q
    ||||||||||||||||||||||||  ||| ||||||||||||  ||||||| |||||  ||||||||||||| |||||  ||| |||||||| |||||||    
T  12807 taatagtcgtaggtgcatgtgtgcgtgtgtgtgtgtgtatgcctctcttatttgcttcatagtttaggtcaatggtccatgtggtggtccaacgccacca 12708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 22592 - 22390
Alignment:
Q  27 ggatattagaatgtaaattagggctttgatgtaaataatttattt-tattcccgtcatttacttttccgcagaccttagaatgta-aataggcttttatg 124  Q
    |||| |||||||||||||||||  |||||||||| ||||| |||| | |||  ||| |||| ||||| ||||||||||||||||| ||| || |||||||    
T  22592 ggatgttagaatgtaaattaggt-tttgatgtaattaattaatttattttcttgtcgttta-ttttctgcagaccttagaatgtataattgg-ttttatg 22496  T
Q  125 taatagtcgtaggtgcatgtgtgcgtgc--gtgtgtgtatgcctct--tatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccacca 220  Q
    |||||||||||| ||||||||||| ||   ||||||||||| ||||  ||| |||||  ||||||||||||| |||||| ||| |||||||| |||||||    
T  22495 taatagtcgtagctgcatgtgtgcatgtttgtgtgtgtatgtctctcttatttgcttcatagtttaggtcaatggtccttgtggtggtccaacgccacca 22396  T
Q  221 tgaggt 226  Q
    | ||||    
T  22395 taaggt 22390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1855 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1855
Description:

Target: scaffold1855; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 226
Target Start/End: Original strand, 762 - 926
Alignment:
Q  52 ttgatgtaaataatttattt--tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcg 149  Q
    ||||||||||||||||||||  | |||  |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||           
T  762 ttgatgtaaataatttatttatttttcttgtcattta-ttttctgcagaccttagaatgtaaataggcttttatgtaatagtcgtagatgcat------- 853  T
Q  150 tgcgtgtgtgtatgcctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
        |||||||||| ||||| ||||||| ||||||||||| |||||||||  || |||||||||||| |||||||||    
T  854 ---atgtgtgtatgtctcttctctgcttggtagtttaggttaaaggtccttatggtggtccaatgcc-ccatgaggt 926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 22186 - 22046
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattt--tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttt 120  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||  | |||  |||||||| ||||| ||||||||||||||||||||||| |||    
T  22186 gcaaggatgttagaatgtaaattagg-ctttgatgtaaataatttatttacttttcttgtcattta-ttttctgcagaccttagaatgtaaataggattt 22089  T
Q  121 tatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    | |||||||||  |||||||||| ||| ||| ||| ||||||||    
T  22088 tttgtaatagt-ttaggtgcatgggtgtgtgtgtgggtgtatgc 22046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 2374 - 2474
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgc--gtgtgtgtatgcctc-ttatctgctttgtagtttaggtc 190  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||  ||||||||||||| | |||||| ||||||||||||||||    
T  2374 gcagactttagaatgtaaataggcttttatgtaatagtcattggtgcatgtgtgtgtgcgtgtgtgtgtatgcccctttatctactttgtagtttaggtc 2473  T
Q  191 a 191  Q
    |    
T  2474 a 2474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 13360 - 13166
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaaa-taggctttt 121  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||||| ||   |||||||| ||||| ||||||||||||||||||| |||||||      
T  13360 gcaaggatactagaatgtaaattagg-ctttgatgtaaatattttattttttt---gtcattta-ttttctgcagaccttagaatgtaaactaggctta- 13267  T
Q  122 atgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc--ctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccacc 219  Q
    ||||||   || |    ||||||||||||||||||||||||||  ||||||| |||||  |||  ||||||||||||||| ||| |||||||| ||||||    
T  13266 atgtaaa--tcat----gcatgtgtgcgtgcgtgtgtgtatgcctctcttatttgcttcatagcctaggtcaaaggtcctggtggtggtccaacgccacc 13173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 100678 - 100778
Alignment:
Q  94 gcagaccttagaatgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgc--gtgtgtgtatgcctc-ttatctgctttgtagtttaggtc 190  Q
    |||||| |||||||||||||||||||||||||||||||| | |||||||||||| ||||  ||||||||||||| | |||||| ||||||||||||||||    
T  100678 gcagactttagaatgtaaataggcttttatgtaatagtcattggtgcatgtgtgtgtgcgtgtgtgtgtatgcccctttatctactttgtagtttaggtc 100777  T
Q  191 a 191  Q
    |    
T  100778 a 100778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 36856 - 36713
Alignment:
Q  7 gtcatttatttttgctgcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaa 106  Q
    ||||||||||||| | ||||| ||||||||||||||||   |||||  ||||||||    ||||||||| |||| |||||||||   |||||||||||||    
T  36856 gtcatttatttttacagcaagaatattagaatgtaaatataggctta-atgtaaat----tattttatttccgttatttactttcttgcagaccttagaa 36762  T
Q  107 tgtaaataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtg 157  Q
    |||||||||| |||| |||||||||  |||||||||||||| ||| |||||    
T  36761 tgtaaatagggtttt-tgtaatagt-ttaggtgcatgtgtgtgtgtgtgtg 36713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 35160 - 35200
Alignment:
Q  93 cgcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  35160 cgcagaccttagaatgtaaataggctttttatgtaatagtc 35200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 21420 - 21459
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  21420 gcagaccttagaatgtaaataggctttttatgtaatagtc 21459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 6759 - 6624
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattt--tattcccgtcatttacttttccgcagaccttagaatgtaaataggcttt 120  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||| ||  | |||  |||||||| ||||| ||||||||||||||||||||||| |||    
T  6759 gcaaggatgttagaatgtaaattagg-ctttgatgtaaataatttacttacttttcttgtcattta-ttttctgcagaccttagaatgtaaataggattt 6662  T
Q  121 tatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtg 159  Q
    | |||||||||  |||||||||| ||| ||| |||||||    
T  6661 tttgtaatagt-ttaggtgcatgggtgtgtgtgtgtgtg 6624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 651 - 523
Alignment:
Q  31 attagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaata 129  Q
    ||||||||||||  |||||  |||||||||||||||| |||| |    |||||||| |||||||||||| ||||||||||  ||||||||||||||||||    
T  651 attagaatgtaatctaggg--ttgatgtaaataatttttttttt----gtcatttatttttccgcagactttagaatgtatcataggcttttatgtaata 558  T
Q  130 gtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||||||||||||| ||||||| |||  |||||||    
T  557 gtcgtaggtgcatgggtgcgtgtgtggctgtatgc 523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 5218 - 5090
Alignment:
Q  31 attagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaa-ataggcttttatgtaata 129  Q
    ||||||||||||  |||||  |||||||||||||||| |||| |    |||||||| |||||||||||| ||||||||||  ||||||||||||||||||    
T  5218 attagaatgtaatctaggg--ttgatgtaaataatttttttttt----gtcatttatttttccgcagactttagaatgtatcataggcttttatgtaata 5125  T
Q  130 gtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
    |||||||||||||| ||||||| |||  |||||||    
T  5124 gtcgtaggtgcatgggtgcgtgtgtggctgtatgc 5090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0956 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0956
Description:

Target: scaffold0956; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 602 - 467
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaaatagg-ctttt 121  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||  |    |||||||| ||||| |||||||||||||||||||||||  ||||    
T  602 gcaaggatgttagaatgtaagttagg-ctttgatgtaaataatttatttctt----gtcattta-ttttctgcagaccttagaatgtaaataggattttt 509  T
Q  122 atgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgc 164  Q
     |||||||||  |||||||||| ||||||| ||| ||||||||    
T  508 ttgtaatagt-ttaggtgcatgggtgcgtgtgtgggtgtatgc 467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 226
Target Start/End: Original strand, 22281 - 22422
Alignment:
Q  82 atttacttttccgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctg-ctttg 179  Q
    ||||| ||| |||||||| |||||||||| |||||||||  ||||||||||| ||||||||||||||||      ||||||||||||||||||  |||||    
T  22281 atttattttgccgcagactttagaatgtataataggctta-atgtaatagtcttaggtgcatgtgtgcgca----tgtgtatgcctcttatcttactttg 22375  T
Q  180 tagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||||||||||||||| | | ||||||||  ||||||| ||||    
T  22376 tagtttaggtcaaaggtccttgaggtggtccaacaccaccataaggt 22422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0540 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0540
Description:

Target: scaffold0540; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 1667 - 1585
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta 110  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||||| ||   |||||||| |||||||||||||||||||||||    
T  1667 gcaaggatattagaatgtaaatta-ggttttaatgtaaataatttattttctt---gtcattta-ttttccgcagaccttagaatgta 1585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 8038 - 7929
Alignment:
Q  52 ttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta-aatagg-cttttatgtaatagtcgtaggtgcatgtgtgcg 149  Q
    ||||||||||||||||||||| ||   |||||||| |||||||||||| ||||||||||  ||||| | |||||||||||||||||||||||  | || |    
T  8038 ttgatgtaaataatttattttctttttgtcatttatttttccgcagactttagaatgtatcataggccatttatgtaatagtcgtaggtgcaaatatggg 7939  T
Q  150 tgcgtgtgtg 159  Q
    ||||||||||    
T  7938 tgcgtgtgtg 7929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1271 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold1271
Description:

Target: scaffold1271; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 609 - 514
Alignment:
Q  31 attagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgtaaataggcttttatgtaata 129  Q
    ||||||||||||  |||||  |||||||||||||||| |||| ||| ||||||||| ||    ||||||||||||||||||||||||||||||||||||    
T  609 attagaatgtaatctaggg--ttgatgtaaataatttttttt-ttctcgtcatttatttcattgcagaccttagaatgtaaataggcttttatgtaata 514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1271; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 490 - 440
Alignment:
Q  176 tttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  490 tttgtagtttaggtcaaaggtcctcgtggtggtccaacgccaccatgaggt 440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1796 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1796
Description:

Target: scaffold1796; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 427 - 512
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttccgcagaccttagaatgta 110  Q
    ||||||||||||||||||||||||  | ||| |||||||| ||||||| | |||  |||||||| |||||||||||||||||||||||    
T  427 gcaaggatattagaatgtaaatta-agttttaatgtaaatgatttattattttcttgtcattta-ttttccgcagaccttagaatgta 512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 29198 - 29108
Alignment:
Q  138 tgcatgtgtgcgtgcgtgtgtgtatgc--ctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||||||||||||||||||||||  ||||||| |||||  |||  ||||||||||||||| ||| |||| ||| |||||||| ||||    
T  29198 tgcatgtgtgcgtgcgtgtgtgtatgcctctcttatttgcttcatagcctaggtcaaaggtccttgtggtggttcaacgccaccataaggt 29108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 29303 - 29218
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataatttatttt-attcccgtcatttacttttccgcagaccttagaatgtaaa 112  Q
    ||||||||| ||||||||||| |||  |||| ||||||||| |||||||| |||   |||||||| ||||| |||||||||||||||||||    
T  29303 gcaaggatactagaatgtaaactagt-ctttaatgtaaatattttatttttatt---gtcattta-ttttctgcagaccttagaatgtaaa 29218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 35503 - 35413
Alignment:
Q  138 tgcatgtgtgcgtgcgtgtgtgtatgc--ctcttatctgctttgtagtttaggtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||||||||||||||||||||||  ||||||| |||||  |||||||||||||| |  || ||| |||||||| |||||||| ||||    
T  35503 tgcatgtgtgcgtgcgtgtgtgtatgcctctcttatttgcttcatagtttaggtcaaaagctcttgtggtggtccaacgccaccataaggt 35413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 35608 - 35525
Alignment:
Q  23 gcaaggatattagaatgtaaattagggctttgatgtaaataattta-ttttattcccgtcatttacttttccgcagaccttagaatgta 110  Q
    ||||||||| ||||||||||| |||| |||| |||||||||||||| |||||||   |||||||| ||||| |||||||||||||||||    
T  35608 gcaaggatactagaatgtaaactagg-ctttaatgtaaataatttatttttatt---gtcattta-ttttctgcagaccttagaatgta 35525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 43189 - 43058
Alignment:
Q  89 tttccgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtgcatgtgtgcgtgcgtgtgtgtatgcctcttatctgctttgtagtttag 187  Q
    |||| ||||||||||||||||| |||||| |||||||||||||   ||||||||||||||    ||||| ||| | ||| |||  ||||| |||||||||    
T  43189 tttcggcagaccttagaatgtataatagg-ttttatgtaatagctttaggtgcatgtgtg----cgtgtatgtttacctttta--tgcttagtagtttag 43097  T
Q  188 gtcaaaggtcctcgtgatggtccaatgccaccatgaggt 226  Q
    |||||||||||| ||| ||||||||  ||||||| ||||    
T  43096 gtcaaaggtccttgtggtggtccaacaccaccataaggt 43058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 10110 - 10040
Alignment:
Q  70 tttattcccgtcatttacttttccgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtg 139  Q
    |||||| ||||||||||||||  |||||||| ||| ||||| |||||| |||||||||||||| |||||||    
T  10110 tttatttccgtcatttactttctcgcagaccatagcatgtataataggtttttatgtaatagttgtaggtg 10040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3452 - 3365
Alignment:
Q  1 ttttacgtcatttatttttgctgcaaggatattagaatgtaaattagggctttgatgtaaataatttattttattcccgtcatttacttttc 92  Q
    ||||| ||||||||||||| | |||||| |||||||||||||||||||  |   |||||||    |||||||||| ||||||||||||||||    
T  3452 ttttatgtcatttatttttacagcaagggtattagaatgtaaattaggtttgaaatgtaaa----ttattttatttccgtcatttacttttc 3365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1761 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1761
Description:

Target: scaffold1761; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 194 - 151
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtcgtag 136  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  194 gcagaccttagaatgtaagtaggctttttatgtaatagtcgtag 151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1623 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1623
Description:

Target: scaffold1623; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 875 - 836
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  875 gcagaccttagaatgtaaataggctttttatgtaatagtc 836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1575 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1575
Description:

Target: scaffold1575; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 1312 - 1351
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  1312 gcagaccttagaatgtaaataggctttttatgtaatagtc 1351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 2167 - 2206
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  2167 gcagaccttagaatgtaaataggctttttatgtaatagtc 2206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 1488 - 1449
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  1488 gcagaccttagaatgtaaataggctttttatgtaatagtc 1449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 16578 - 16539
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  16578 gcagaccttagaatgtaaataggctttttatgtaatagtc 16539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 24497 - 24458
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  24497 gcagaccttagaatgtaaataggctttttatgtaatagtc 24458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 201461 - 201422
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatagtc 132  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  201461 gcagaccttagaatgtaaataggctttttatgtaatagtc 201422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6229 - 6272
Alignment:
Q  1 ttttacgtcatttatttttgctgcaaggatattagaatgtaaat 44  Q
    ||||| ||||||||||||| | ||||||||||||||||||||||    
T  6229 ttttatgtcatttatttttacagcaaggatattagaatgtaaat 6272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 12017 - 11979
Alignment:
Q  8 tcatttatttttgctgcaaggatattagaatgtaaatta 46  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  12017 tcatttatttttacagcaaggatattagaatgtaaatta 11979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0721 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0721
Description:

Target: scaffold0721; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 1690 - 1653
Alignment:
Q  94 gcagaccttagaatgtaaataggc-ttttatgtaatag 130  Q
    |||||||||||||||||||||||| |||||||||||||    
T  1690 gcagaccttagaatgtaaataggctttttatgtaatag 1653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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