View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562-Insertion-1 (Length: 857)
Name: NF4562-Insertion-1
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-176; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 42998515 - 42998144
Alignment:
| Q |
7 |
attatcatccctaatacaaatatcaattctcacctagtcaaaataatacttctcttccatatgtgaacatcggtttccaagcagaattggaagatgacat |
106 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42998515 |
attatcatccctaatacaaataccaattctcacctagtcaaaataatacttctcttccatatgtgaacatcggtttccaagcagacttggaagatgacat |
42998416 |
T |
|
| Q |
107 |
ccaagaggagctcaataattcttgtgatcatagcttatagatgacttatatataatctctggctaaccttaaatatttgaatttttctggctaacctttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42998415 |
ccaagaggagctcaataattcttgtgatcatagcttatagatgacttatatataatctctagctaaccttaaatatttgaatttttctggctaacctttt |
42998316 |
T |
|
| Q |
207 |
tgttagaccatatcaataataaacttctaattgtcg---gnnnnnnnntagtataaaaatgcatcaattaatgtatagtgaattaaatacaatctttgtt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42998315 |
tgttagaccatatcaataataaacttctaattgtcggaagaaaaaaaatagtataaaaatacatcaattaatgtatagtgaattaaatacaatctttgtt |
42998216 |
T |
|
| Q |
304 |
gcaatgcatgtgagagttcagatgggaattgtatgtggctatgtctacgtatatggtgtaatacaagtggta |
375 |
Q |
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| T |
42998215 |
gcaatgcatgtgagagttcagatgggaattgtatgtggctatgtctacgtatatggtgtaatataagtggta |
42998144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 444 - 846
Target Start/End: Complemental strand, 42998074 - 42997680
Alignment:
| Q |
444 |
aaatgttaaaatgaattatattatcaaaccaaaatgtctccaacacaagatgtgtttaagaagacataaagttatgaagttatccaatacaagaatgaag |
543 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42998074 |
aaatgctaaaatgaattatattatcaaaccaaaatgtctccaacacaagatgtgtttaagaagacataaagttatgaagttatccaatacaagaatgaag |
42997975 |
T |
|
| Q |
544 |
aaaatgaagcnnnnnnnnnnnnnnnnnnnnnctaagtaacaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacatagc |
643 |
Q |
| |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42997974 |
aaaatgaagcaaaagaaaaaaa---------ctaagtaacagccattaggcaagaaagaggattaaacctccaataattatagtcaaaatcaaacatagc |
42997884 |
T |
|
| Q |
644 |
gtatgtcatttaaaccaccaaaaagatgaagtttaacattttcgcctaaagattgaatatctttctccttttattgaaa-ttgtgtttatttctttcttt |
742 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42997883 |
gtatgtcatttaaaccactaaaaagatgaagtttaatattttcgcttaaagattgaatatctttctccttttattgaaacatgtgtttatttctttcttt |
42997784 |
T |
|
| Q |
743 |
ttaagttatctacactcgtgaaagccatgttatgttgaatgccttttaactacaaaatatggctattagcaattaagtcattatcataaaattcatgacc |
842 |
Q |
| |
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|||| |||||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42997783 |
ttaacttatctacactcgtgaaagctatattatgttgtatgcctttcaactacaaaatatggctattagcaattaactcattatcataaaattcatgacc |
42997684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 576 - 698
Target Start/End: Complemental strand, 4154902 - 4154778
Alignment:
| Q |
576 |
taagtaacaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacatagcgtatgtc-atttaaaccacca-aaaagatgaa |
673 |
Q |
| |
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||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||| |
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| T |
4154902 |
taagtaacaaccattggtcaagaaggaggattaaacctccaataattgtagtcaaaatcaaacatagcatatgtcgatttaaaccaccagaaaacatgaa |
4154803 |
T |
|
| Q |
674 |
gtttaacattttcgcctaaagattg |
698 |
Q |
| |
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| ||||||||| |||||||||||| |
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| T |
4154802 |
gcttaacatttatgcctaaagattg |
4154778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 509
Target Start/End: Complemental strand, 4155022 - 4154965
Alignment:
| Q |
452 |
aaatgaattatattatcaaaccaaaatgtctccaacacaagatgtgtttaagaagaca |
509 |
Q |
| |
|
||||||||||||||| |||||||||| |||| | ||||||||||||| |||||||| |
|
|
| T |
4155022 |
aaatgaattatattagcaaaccaaaaggtcttcgctacaagatgtgtttcagaagaca |
4154965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 575 - 640
Target Start/End: Complemental strand, 24430309 - 24430244
Alignment:
| Q |
575 |
ctaagtaacaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacat |
640 |
Q |
| |
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||||| |||||||||||| |||||||| |||||| ||| |||||||| ||||||||||||||||| |
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| T |
24430309 |
ctaaggaacaaccattagataagaaagatgattaagccttcaataattatagtcaaaatcaaacat |
24430244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 594 - 634
Target Start/End: Complemental strand, 39698417 - 39698377
Alignment:
| Q |
594 |
caagaaagaggattaaacctccaataattgtagtcaaaatc |
634 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
39698417 |
caagaaagagtattaagcctccaataattgtagtcaaaatc |
39698377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 582 - 668
Target Start/End: Original strand, 17265278 - 17265364
Alignment:
| Q |
582 |
acaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacatagcgtatgtc-atttaaaccaccaaaaag |
668 |
Q |
| |
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|||||| | |||||| ||||||||||| |||||||||| ||||||||||||| |||||||| |||||| |||| |||||||| |||| |
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| T |
17265278 |
acaaccttaaggcaacgaagaggattaagcctccaataagtgtagtcaaaatc-aacatagcatatgtcgattttaaccaccagaaag |
17265364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 643
Target Start/End: Complemental strand, 21138339 - 21138272
Alignment:
| Q |
576 |
taagtaacaaccattaggcaagaaagaggattaaacctccaataattgtagtcaaaatcaaacatagc |
643 |
Q |
| |
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||||| ||||| ||||| |||||||||||||||| || |||| ||||||| ||||||| ||| ||||| |
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|
| T |
21138339 |
taagttacaacaattagacaagaaagaggattaagcccccaaaaattgtaatcaaaataaaaaatagc |
21138272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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