View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562-Insertion-2 (Length: 749)
Name: NF4562-Insertion-2
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 545
Target Start/End: Original strand, 32101468 - 32101992
Alignment:
| Q |
8 |
gttctagtgctggcttttgtttttatgaaaattaaattagactaacattcaagaatatttattaaatcaagcacaatagttattatagttgtaatcaaag |
107 |
Q |
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| T |
32101468 |
gttctagtgcttgcttttgtttttaagaaaattaaatttgcctaacattcaagaatatttattaaatcaagcacattaattattatagtcataatcaaag |
32101567 |
T |
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| Q |
108 |
cttttttgattgtgtctataaactgtttaatgttgacattaagaattgcttccatagccgtagtagtttctcttttctttcggcttatattgcaattata |
207 |
Q |
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| T |
32101568 |
-tttgttgattgtgtctataaattgtttaatgttgacattaaaaattgcttccatagctgtagtagtttctcttttctttcagcttatattgcaattata |
32101666 |
T |
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| Q |
208 |
tagtcccatgatttggtggcttacattgaataataaacaaatagtgtaacgaaagattggtatatttactttaaaatttagactaaatacatcaaaactt |
307 |
Q |
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| T |
32101667 |
tagtcccatgatttggtggcttacattgaataataaacaaatagtgtaaagaaagattggtatatttac-------ttcagactaaatacatcaaaactt |
32101759 |
T |
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| Q |
308 |
aagatataagagtattcacgtacgtgtatctaaagactctcttgattatggaggctttacttttttaacaatggaataaaaatatacattaatagaggcn |
407 |
Q |
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| T |
32101760 |
aagatataagagtattgacgtgcgtgtatgtaaagactcttttgattatggaggctttacttttttaacaatggaataaaaagatacattaatagaggc- |
32101858 |
T |
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| Q |
408 |
nnnnnnnnnnnnnaacaaatccaaaactagctacatctatataggagattattttcattataaggagccaaaatgcaatctgaacgtgaaaaacgttg-t |
506 |
Q |
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| T |
32101859 |
-----tatatataaacaaaaccaaaactagctacacctacataggagattattttcattataagaagccaaaatgcaatctgaacatgaaaaacgttgtt |
32101953 |
T |
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| Q |
507 |
taaacaagacatatatgagaccaacccaagcataacttc |
545 |
Q |
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| T |
32101954 |
tagacaagacatatatgagaccaacccaagcataacttc |
32101992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 32103055 - 32103271
Alignment:
| Q |
8 |
gttctagtgctggcttttgtttttatgaaaattaaattagactaacattcaagaatatttattaaatcaagcacaatagttattatagttgtaatcaaag |
107 |
Q |
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| T |
32103055 |
gttctagtgcttgcttttgtttttaagaaaattaaattagactaacattcaagaatatttatcaaatcaagcacaataattattatagtcataatcaaaa |
32103154 |
T |
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| Q |
108 |
cttttttgattgtgtctataaactgtttaatgttgacattaagaattgcttccatagccgtagtagtttctcttttctttcggcttatattgcaattata |
207 |
Q |
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| T |
32103155 |
aatttc-gattgtgtctataaactgtttaatgttgacattgagaattgtttccatagccgttgtagtttctcgtttctttcagcttatattgtaattata |
32103253 |
T |
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| Q |
208 |
tagtcccatgatttggtg |
225 |
Q |
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| T |
32103254 |
tagtcccatgatttggtg |
32103271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 358 - 692
Target Start/End: Original strand, 32103366 - 32103695
Alignment:
| Q |
358 |
gaggctttacttttttaacaatggaataaaaa-tatacattaatagaggcnnnnnnnnnnnnnnaacaaatccaaaactagctacatctatataggagat |
456 |
Q |
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| T |
32103366 |
gaggctttactttttcaacaatggaataaaaaatatacattaacagaggctata----------aacaaatccaaaactagctacaccaacataggagat |
32103455 |
T |
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| Q |
457 |
tattttcattataaggagccaaaatgcaatctgaacgtgaaaaacgttg--------------ttaaacaagacatatatgagaccaacccaagcataac |
542 |
Q |
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| T |
32103456 |
ttttttcattataagaagccaaaattcaatatgaacatgaaaaacgttgtggagccattcatattagacaagacatatatgagaccaacccaagcataac |
32103555 |
T |
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| Q |
543 |
ttcnnnnnnncatacagagcaaactttattatataataggagacaaagggtagtggatactccccg--tttacatcaatatgaagtcctaattttacaac |
640 |
Q |
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| T |
32103556 |
tt------------caaagcaaaatttattaaataatgggagacaaagggtagtggaaac-cggggtctttacatcaatatgcagtcctaattttacgat |
32103642 |
T |
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| Q |
641 |
aaagtaataaacataacataagataaagatgcctttttaagc-tgccttatat |
692 |
Q |
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| T |
32103643 |
aaagtaacaaacataacataagataatgatgccttttcaagcttgccttatat |
32103695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 708 - 740
Target Start/End: Original strand, 32103907 - 32103939
Alignment:
| Q |
708 |
aaaccatcaaaacatggttatcacttctcagta |
740 |
Q |
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| T |
32103907 |
aaaccatcaaaacatggttatcacttctcagta |
32103939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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