View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562-Insertion-3 (Length: 402)
Name: NF4562-Insertion-3
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562-Insertion-3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Original strand, 44187113 - 44187507
Alignment:
| Q |
8 |
agtattgtttgatatattacacaccaacctgtgtgcttttttaccgcaccaaatcctgatcctatatttaattattggttgccgttaatacttttgtcca |
107 |
Q |
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| T |
44187113 |
agtattgtttgatatattacacaccaaactgtatgcttttttaccgcaccaaattctgatcctatatttagttattggttgccgttgatacttttgtcca |
44187212 |
T |
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| Q |
108 |
tcacataagcgttttgaggccaatttcacgatgaaaaaatcttggtataaactatgagctgattattaacataattgggcaaggcatataaatcccaagc |
207 |
Q |
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| T |
44187213 |
tcacataagtgttttgaggccaatttcacgatgaaaaaaccttggtataaactatgagctgattattaacataattgggcaaggcatataaatcccaagc |
44187312 |
T |
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| Q |
208 |
aatgtatagatagctgcataggcttgtaaataaaatacgagaaagatgtgacgttccaaatccaattgcgtttaaacatgaagcatctttgcttttttgg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44187313 |
aatgtatagatagctgcataggcttgtaaataaaatacgagaaagatgtgacgttccaaatccaattgcgtttaaacatgaagcatctttgcttttttgg |
44187412 |
T |
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| Q |
308 |
tgctactacgttcttcatcaaaatcatttgctgcaagtagaaagttgaacaaagttggatgtattccaaaattatacactctacgactctagaca |
402 |
Q |
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| T |
44187413 |
tgctactacgttcttcatcaaaatcatttgctgcaagtagaaagttcaacaaagtgggatgtattccaaaattatacaccctacgactctagaca |
44187507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 27646983 - 27646930
Alignment:
| Q |
17 |
tgatatattaca-caccaacctgtgtgcttttttaccgcaccaaatcctgatcc |
69 |
Q |
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|||| ||||||| |||||| |||||||||||||||| ||||||||||||||||| |
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| T |
27646983 |
tgatttattacagcaccaaactgtgtgcttttttacagcaccaaatcctgatcc |
27646930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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