View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562-Insertion-5 (Length: 367)
Name: NF4562-Insertion-5
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562-Insertion-5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 26537018 - 26537377
Alignment:
| Q |
8 |
taaagttggatcgacccatcgaaccttctttcgagcttcattttttaatatctcgtcatctttcnnnnnnncagcaagatcctcatcttcagcagcctca |
107 |
Q |
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| T |
26537018 |
taaagttggatcaatccgtcgaaccttctttcgagcttcattttttaatatctcgtcatctttcaaaaaaacagcaagatcctcatcttcagcagcctca |
26537117 |
T |
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| Q |
108 |
gcagctgctgcaatagcatttttggtactatggagatattcagctttgaagtatttgttccagaaatctacctcgctcatcttactcggtacaaaattga |
207 |
Q |
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| T |
26537118 |
gcagctgctgcaatagcatttttggtactatggagatattcagctttgaagtatttgttccagaaatctacctcgctcatgttactcggtacaaaattga |
26537217 |
T |
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| Q |
208 |
ggaatgcctggtgaattgctggtttgagagcaaaaatctgatattttatttctcgagtcaattgaaatttaactatatttatccgaccgtcactagtagt |
307 |
Q |
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| T |
26537218 |
ggaatgcctggtgaattgctggtttgagagcaaaaatctgatattttatttctcgagtcaattgaaatttaactatatttatccgaccgtcactagtagt |
26537317 |
T |
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| Q |
308 |
aggctttgtgtcgaagatcaaacaatttttaaatccaatcctttgttttaactttcggct |
367 |
Q |
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| T |
26537318 |
aggctttgtgtcgaagatcaaacaatttttaaatccaatcctttgtgttaactttcggct |
26537377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 30 - 189
Target Start/End: Original strand, 40350892 - 40351051
Alignment:
| Q |
30 |
accttctttcgagcttcattttttaatatctcgtcatctttcnnnnnnncagcaagatcctcatcttcagcagcctcagcagctgctgcaatagcatttt |
129 |
Q |
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| T |
40350892 |
accttctttcgagcttcattttctaatatctcgtcatctttcaaaaaaacagcaagatcttcatcttcagcagcctcggcagctgctgcaatagcatttt |
40350991 |
T |
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| Q |
130 |
tggtactatggagatattcagctttgaagtatttgttccagaaatctacctcgctcatct |
189 |
Q |
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| T |
40350992 |
tggtactatggagatattcagctttaaagtatttgttccagaaatctacctcgctcatct |
40351051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 40355494 - 40355557
Alignment:
| Q |
304 |
tagtaggctttgtgtcgaagatcaaacaatttttaaatccaatcctttgttttaactttcggct |
367 |
Q |
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| T |
40355494 |
tagtaggctttgtgtcgaagatcaaagaatttttaaatccaatcctttgttttaactttcggct |
40355557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 40351165 - 40351224
Alignment:
| Q |
188 |
cttactcggtacaaaattgaggaatgcctggtgaattgctggtttgagagcaaaaatctg |
247 |
Q |
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| T |
40351165 |
cttactgggtacaaaattgaggaatgcctggtgaactgctggtttgagggcaaaaatctg |
40351224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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