View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562-Insertion-6 (Length: 279)
Name: NF4562-Insertion-6
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562-Insertion-6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 49 - 279
Target Start/End: Complemental strand, 43323248 - 43322995
Alignment:
| Q |
49 |
gttcatacaactctaatcaacatgactctgtataaaacggataaaagctagctagcagatgattcaaac--------------aaatgtgtaattataga |
134 |
Q |
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| T |
43323248 |
gttcatacaactctaatcaacatgactctgtataaaacggataaaagctagctagcagatgattcaaaccagatgattcaaacaaatctgtaattataga |
43323149 |
T |
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| Q |
135 |
tattcatagacaaaatgatattgtttacaaagtacaaatcccattgtcatataccacttgggtttaaaagag---------nnnnnnnnctaatttattc |
225 |
Q |
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| T |
43323148 |
tattcataaacaaaatgatattgtttacaaagtacaaatcccattgtcatataccacttgggtttaaaagagaaaaaaaaaaaaaaaaactaatttattc |
43323049 |
T |
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| Q |
226 |
ctccaattggaagcatgttttccttgtaaattcctatatgacaattctctcctt |
279 |
Q |
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| T |
43323048 |
ctccaattggaagcatgttttccttgtaaattcctatatgacaattctctcctt |
43322995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Complemental strand, 41228180 - 41228119
Alignment:
| Q |
218 |
atttattcctccaattggaagcatgttttccttgtaaattcctatatgacaattctctcctt |
279 |
Q |
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| T |
41228180 |
atttattccaccaattggaagaaggtcttccttgtaaactgctatatgacaatattctcctt |
41228119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 43324197 - 43324168
Alignment:
| Q |
27 |
atcccactaccctgactccatagttcatac |
56 |
Q |
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| T |
43324197 |
atcccactaccctgactccatagttcatac |
43324168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 42446604 - 42446571
Alignment:
| Q |
220 |
ttattcctccaattggaagcatgttttccttgta |
253 |
Q |
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| T |
42446604 |
ttattcctccaattggaagaatgttttccttgta |
42446571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 9593586 - 9593619
Alignment:
| Q |
220 |
ttattcctccaattggaagcatgttttccttgta |
253 |
Q |
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| T |
9593586 |
ttattcctccaattggaagaatgttttccttgta |
9593619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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