View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_high_13 (Length: 252)
Name: NF4562_high_13
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_high_13 |
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| [»] scaffold0024 (1 HSPs) |
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| [»] scaffold1049 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 13649 - 13895
Alignment:
| Q |
1 |
aacttctaatttgaaactttctggttttgcagattctgattgggcaacttgtcctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatct |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13649 |
aacttctaatttgaaactttctagttttgcagattctgattgggcaacttgtcctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatct |
13748 |
T |
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| Q |
101 |
tctctcatttcatggaaatccaagaagcagtcaatcgtctccaaatcaagctcagaagctgaatatcgtgcattagcaagccttacatgtgaactgcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13749 |
tctctcatttcatggaaatccaagaagcagtcgatcgtctccaaatcaagctcagaagctgaatatcgcgcattagcaagccttacatgtgaactgcaat |
13848 |
T |
|
| Q |
201 |
ggctaatgtacctctttaaagatctgcacctctctttctctgctcct |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13849 |
ggctaatgtacctctttaaagatctgcacctctctttctcttctcct |
13895 |
T |
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Target: scaffold1049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1049
Description:
Target: scaffold1049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 465 - 413
Alignment:
| Q |
77 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
129 |
Q |
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|||| ||||||||||||||| ||||| ||||| |||||||| || |||||||| |
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| T |
465 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
413 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 19742956 - 19743060
Alignment:
| Q |
25 |
ttttgcagattctgattgggcaacttgtcctacaaccaggaaatctgtaacgggttattgtgtgtttcttggatcttctctcatttcatggaaatccaag |
124 |
Q |
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|||||| |||||||||||||||| |||||| ||| || || ||| | || || | ||||||||| ||||| |||||| | ||||| ||||| |||||| |
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| T |
19742956 |
ttttgctgattctgattgggcaaggtgtcctgaaactagaaagtctattacaggattttgtgtgttacttggttcttctttaatttcttggaagtccaag |
19743055 |
T |
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| Q |
125 |
aagca |
129 |
Q |
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||||| |
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| T |
19743056 |
aagca |
19743060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 26083349 - 26083297
Alignment:
| Q |
77 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
129 |
Q |
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|||| ||||||||||||||| ||||| ||||| |||||||| || |||||||| |
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| T |
26083349 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
26083297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 26107136 - 26107084
Alignment:
| Q |
77 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
129 |
Q |
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|||| ||||||||||||||| ||||| ||||| |||||||| || |||||||| |
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|
| T |
26107136 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
26107084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 4502303 - 4502355
Alignment:
| Q |
77 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
129 |
Q |
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| T |
4502303 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
4502355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 15825855 - 15825907
Alignment:
| Q |
77 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
129 |
Q |
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|||| ||||||||||||||| ||||| ||||| |||||||| || |||||||| |
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| T |
15825855 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
15825907 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 548938 - 548886
Alignment:
| Q |
77 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
129 |
Q |
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|||| ||||||||||||||| ||||| ||||| |||||||| || |||||||| |
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| T |
548938 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
548886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 30279350 - 30279298
Alignment:
| Q |
77 |
ggttattgtgtgtttcttggatcttctctcatttcatggaaatccaagaagca |
129 |
Q |
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|||| ||||||||||||||| ||||| ||||| |||||||| || |||||||| |
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| T |
30279350 |
ggtttttgtgtgtttcttggctcttccctcatctcatggaagtctaagaagca |
30279298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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