View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4562_high_14 (Length: 251)

Name: NF4562_high_14
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4562_high_14
NF4562_high_14
[»] scaffold0476 (1 HSPs)
scaffold0476 (2-251)||(3295-3544)
[»] scaffold0077 (1 HSPs)
scaffold0077 (2-251)||(3624-3872)
[»] chr6 (12 HSPs)
chr6 (2-251)||(21565214-21565462)
chr6 (2-249)||(18800242-18800488)
chr6 (2-251)||(23839003-23839251)
chr6 (2-251)||(10986183-10986431)
chr6 (2-251)||(4477662-4477910)
chr6 (20-251)||(23057760-23057991)
chr6 (2-251)||(29614149-29614398)
chr6 (3-124)||(9187300-9187420)
chr6 (123-251)||(930098-930225)
chr6 (188-251)||(34639989-34640051)
chr6 (188-251)||(34646663-34646725)
chr6 (3-94)||(24513002-24513094)
[»] chr2 (12 HSPs)
chr2 (2-251)||(23089057-23089305)
chr2 (2-251)||(23101465-23101713)
chr2 (2-251)||(23878813-23879060)
chr2 (2-251)||(19661456-19661703)
chr2 (2-251)||(6483523-6483770)
chr2 (2-251)||(6486990-6487237)
chr2 (2-251)||(26583632-26583879)
chr2 (48-96)||(21908209-21908257)
chr2 (188-251)||(23265133-23265195)
chr2 (188-251)||(23280201-23280263)
chr2 (223-251)||(5706026-5706054)
chr2 (191-251)||(21908353-21908412)
[»] chr3 (9 HSPs)
chr3 (2-251)||(55499104-55499353)
chr3 (2-251)||(9534133-9534380)
chr3 (2-251)||(23370508-23370756)
chr3 (2-251)||(24192759-24193009)
chr3 (3-251)||(16801470-16801716)
chr3 (2-251)||(14762760-14763009)
chr3 (21-251)||(20247791-20248021)
chr3 (4-251)||(38310802-38311049)
chr3 (191-251)||(18929239-18929298)
[»] scaffold0247 (1 HSPs)
scaffold0247 (2-251)||(11146-11394)
[»] chr1 (3 HSPs)
chr1 (2-251)||(20437026-20437274)
chr1 (3-109)||(19663662-19663768)
chr1 (188-251)||(32651563-32651625)
[»] scaffold0026 (2 HSPs)
scaffold0026 (2-251)||(111491-111738)
scaffold0026 (2-251)||(11853-12102)
[»] chr5 (6 HSPs)
chr5 (2-251)||(38144539-38144786)
chr5 (2-251)||(28370057-28370304)
chr5 (2-251)||(19512191-19512439)
chr5 (2-251)||(22750945-22751194)
chr5 (188-251)||(18407946-18408008)
chr5 (188-251)||(23111202-23111264)
[»] chr7 (14 HSPs)
chr7 (2-251)||(14422789-14423037)
chr7 (2-251)||(16009382-16009629)
chr7 (2-251)||(15167979-15168228)
chr7 (2-249)||(10895795-10896042)
chr7 (5-251)||(16677100-16677348)
chr7 (5-251)||(17651336-17651584)
chr7 (2-251)||(18873164-18873413)
chr7 (15-171)||(13743527-13743683)
chr7 (3-124)||(21231089-21231210)
chr7 (197-251)||(11382873-11382926)
chr7 (197-251)||(11389350-11389403)
chr7 (87-171)||(12709924-12710009)
chr7 (87-171)||(13122995-13123080)
chr7 (56-109)||(20311196-20311249)
[»] chr8 (11 HSPs)
chr8 (2-251)||(44477428-44477675)
chr8 (2-251)||(44492586-44492833)
chr8 (2-251)||(8727735-8727984)
chr8 (2-161)||(27940946-27941104)
chr8 (3-109)||(14056707-14056813)
chr8 (3-117)||(29643522-29643636)
chr8 (3-109)||(25111782-25111888)
chr8 (188-251)||(23482055-23482117)
chr8 (197-251)||(14056566-14056619)
chr8 (87-171)||(23866504-23866589)
chr8 (197-251)||(25111976-25112029)
[»] scaffold0553 (1 HSPs)
scaffold0553 (2-251)||(10198-10446)
[»] scaffold0544 (1 HSPs)
scaffold0544 (2-251)||(1528-1776)
[»] scaffold0025 (1 HSPs)
scaffold0025 (2-251)||(14398-14647)
[»] scaffold0154 (1 HSPs)
scaffold0154 (7-251)||(30664-30910)
[»] scaffold0090 (1 HSPs)
scaffold0090 (2-251)||(17973-18222)
[»] scaffold0058 (1 HSPs)
scaffold0058 (15-171)||(110-265)
[»] chr4 (3 HSPs)
chr4 (1-170)||(11847910-11848080)
chr4 (2-171)||(8045913-8046083)
chr4 (3-122)||(15407943-15408062)
[»] scaffold0029 (1 HSPs)
scaffold0029 (42-251)||(111726-111935)
[»] scaffold1773 (1 HSPs)
scaffold1773 (2-171)||(983-1152)
[»] scaffold0006 (1 HSPs)
scaffold0006 (2-171)||(49984-50153)
[»] scaffold0924 (1 HSPs)
scaffold0924 (2-251)||(753-1002)
[»] scaffold0019 (1 HSPs)
scaffold0019 (3-122)||(135277-135396)
[»] scaffold0107 (1 HSPs)
scaffold0107 (3-109)||(40677-40783)
[»] scaffold0117 (2 HSPs)
scaffold0117 (2-168)||(8660-8825)
scaffold0117 (2-168)||(1983-2148)
[»] scaffold0456 (4 HSPs)
scaffold0456 (15-109)||(807-901)
scaffold0456 (15-109)||(7952-8046)
scaffold0456 (187-251)||(921-984)
scaffold0456 (187-251)||(8066-8129)
[»] scaffold0020 (1 HSPs)
scaffold0020 (3-124)||(102057-102178)
[»] scaffold0124 (1 HSPs)
scaffold0124 (3-109)||(34421-34527)
[»] scaffold0261 (1 HSPs)
scaffold0261 (65-124)||(23699-23758)
[»] scaffold0222 (2 HSPs)
scaffold0222 (188-251)||(16811-16873)
scaffold0222 (56-96)||(16678-16718)
[»] scaffold0004 (2 HSPs)
scaffold0004 (188-251)||(116887-116949)
scaffold0004 (56-96)||(116754-116794)
[»] scaffold0461 (1 HSPs)
scaffold0461 (3-96)||(165-258)


Alignment Details
Target: scaffold0476 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 3544 - 3295
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  3544 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatcacagcaacagtatagattaagatttcattctgaacatcaca 3445  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  3444 ttacaacaaaattaacatgattcattacccattcccctcagaatcatcatcaaaccctaaccctcaattttatccccaaggttaagcaattaggtcaatt 3345  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3344 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 3872 - 3624
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||||||    
T  3872 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacatcaca 3773  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3772 ttacaacataattaacatgat-cattacccatccccctcagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcaattaggtcaatt 3674  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3673 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 21565462 - 21565214
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||| |||| |||||    
T  21565462 catcatacagaacttcatcaattcatccaatcaattatattttcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcaca 21565363  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21565362 ttacaacataattaacatgat-cattacccattccccttagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcaattaggtcaatt 21565264  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21565263 ttccgaaattaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 18800242 - 18800488
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| |||||||||||    
T  18800242 catcataccaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatcacaacaacaatatagattaagatttcattttgaacatcaca 18800341  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtcaat 200  Q
    |||||||| ||||||||||| ||||||| |||||||   |||||||||||||||||||||||||||||| |||  | |||    ||||||||||||||||    
T  18800342 ttacaacagaattaacatga-tcattactcattccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaat 18800440  T
Q  201 tttccgaaattacatattatctattaatgagagatagtctcacccttac 249  Q
    |||| ||||||| | |||||  |||| ||||||||||||||||||||||    
T  18800441 tttcagaaattatagattat-gattattgagagatagtctcacccttac 18800488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 23839003 - 23839251
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||||||||| |||    
T  23839003 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattaca 23839102  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtcaa 199  Q
    |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| |||||| ||  ||    | |||||||||||||    
T  23839103 ttacaacagaattaacatga-tcaatacccattccccttagaatcatcatcaaaccctaaccctcaa-tttatcttccaaacactatgcaattaggtcaa 23839200  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  23839201 ttttcagaaattatagattat-gattattgagagatagtctcacccttacct 23839251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 10986431 - 10986183
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| |||||||||||||||||||||||  || ||||||||||||| |||| |||||||||||||||||||||  |||||||||||||| |||    
T  10986431 catcatacaaatcttcatcaattcatccaatcaatcgtaatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattaca 10986332  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtcaa 199  Q
    |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| |||||| ||  ||    | |||||||||||||    
T  10986331 ttacaacagaattaacatga-tcaatacccattcccctcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaaactatgcaattaggtcaa 10986234  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||  ||||||| | |||||  |||| ||| ||||||||||||||||||||    
T  10986233 tttttagaaattatagattat-gattattgaaagatagtctcacccttacct 10986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 4477662 - 4477910
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||| ||||| ||||||||||||| ||| ||||||||||||| |||| ||||||||| |||||||||||  |||||||| ||||| |||    
T  4477662 catcatacaaatctttatcaaatcatccaatcaatcataatttcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattaca 4477761  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtcaa 199  Q
    |||||||| ||||| ||||| ||| ||||||||||||| |||||||||||||||||||||||| ||| |||||| ||  ||    | |||||||||||||    
T  4477762 ttacaacagaattagcatga-tcaatacccattcccctcagaatcatcatcaaaccctaacccacaa-tttatcttccaaaaactatgcaattaggtcaa 4477859  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  4477860 ttttcagaaattatagattat-gattattgagagatagtctcacccttacct 4477910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 23057760 - 23057991
Alignment:
Q  20 caattcatccaatcaattata-ttttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacattacaacaaaattaaca 118  Q
    ||||||||||||||| | ||| |||||||||||||| |||| ||| || ||  | ||||||||  |||||||||||||| | ||||||| | ||||||||    
T  23057760 caattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaaca 23057859  T
Q  119 tgattcattaccca-ttcccctaagaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtcaattttccgaaattacata 216  Q
    ||| |||||||||| ||||| | |||||||||||||||||||||||||||| |||||| | |||    | |||||||||||||||||| | ||||| | |    
T  23057860 tga-tcattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaattttcaggaattataga 23057957  T
Q  217 ttatctattaatgagagatagtctcacccttacct 251  Q
    ||||  ||||  |||||||||||||||||||||||    
T  23057958 ttat-gattatcgagagatagtctcacccttacct 23057991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 29614398 - 29614149
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatat-tttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | |||  |||||||||| || |||| ||| |||||  | ||||||||  |||||||| |||||  |    
T  29614398 catcatacacaaattcatcaattcatccaatcattcataaatttcaatcaagttatgatcacagcaacaacaaagattaagttttcattctaaacatt-c 29614300  T
Q  101 attacaacaaaattaacatgattcattacccattccccta-agaatcatcatcaaaccctaaccctcaattt-tatcctcaaggtgaagcaattaggtca 198  Q
    | ||||| | |||||||||||| ||||||||||| ||||  | ||||||||||||||||||||||||||||| | |   |||  | | |||| |||||||    
T  29614299 aatacaagagaattaacatgat-cattacccatttcccttcataatcatcatcaaaccctaaccctcaatttatttttccaaaattatgcaactaggtca 29614201  T
Q  199 attttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  29614200 attttcagaaattatagattat-gattattgagagatagtctcacccttacct 29614149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 9187300 - 9187420
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||||||||||||||  ||||| |||||| ||||| || ||||| |||| || |||| ||||||||| ||||||||||||| ||||||||||||  | ||    
T  9187300 atcatacaaaacttctccaatttatccaa-caattctaatttcattcaaattctgatcacaacaacattatagattaagaaatcattctgaacactaaat 9187398  T
Q  103 tacaacaaaattaacatgattc 124  Q
    ||||||| | | ||||||||||    
T  9187399 tacaacacattaaacatgattc 9187420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 930225 - 930098
Alignment:
Q  123 tcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaattttccgaaattacatattatct 222  Q
    ||||||||||||||| | |||| ||||||||||||||||||||||||||  |  ||||    |  ||||||||||||||||| |||| || | |||||      
T  930225 tcattacccattcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagattat-g 930127  T
Q  223 attaatgagagatagtctcacccttacct 251  Q
    |||| ||||||||||||||||||||||||    
T  930126 attattgagagatagtctcacccttacct 930098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 34640051 - 34639989
Alignment:
Q  188 caattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||||||||||||| ||||||| | ||||   |||| ||||||||||||||||||||||||    
T  34640051 caattaggtcaattttcagaaattatagattaag-attattgagagatagtctcacccttacct 34639989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 34646725 - 34646663
Alignment:
Q  188 caattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||||||||||||| ||||||| | ||||   |||| ||||||||||||||||||||||||    
T  34646725 caattaggtcaattttcagaaattatagattaag-attattgagagatagtctcacccttacct 34646663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 24513094 - 24513002
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatc-aatttgtgatgacaacaacagtatagattaagaattcattctgaa 94  Q
    |||||||||||||||  ||||| ||||||  |||| || ||||| || || || |||| ||||||||| ||||||| ||||| ||||||||||    
T  24513094 atcatacaaaacttctccaatttatccaacaaattctaatttcattcaaaattctgatcacaacaacattatagatcaagaaatcattctgaa 24513002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 23089305 - 23089057
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| ||||||| |||| |||||    
T  23089305 catcatacagaacttcatcaattcatccaatcaattatattttcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcaca 23089206  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23089205 ttacaacataattaacatgat-cattacccattccccttagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcaattaggtcaatt 23089107  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23089106 ttccgaaattaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 23101713 - 23101465
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||| |||| |||||    
T  23101713 catcatacagaacttcatgaattcatccaatcaattatattttcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacgtcaca 23101614  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  23101613 ttacaacataattaacatgat-cattacccattcccctcagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaaacaattaggtcaatt 23101515  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23101514 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 23101465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 23878813 - 23879060
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||    
T  23878813 catcatacaaaacttcatcaattcatccaatcaattctattttcaatcaatttatgatcacaacaacagtatagattaagatttcattctgaacatcaca 23878912  T
Q  102 ttacaacaaaattaacatgattcatta-cccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaat 200  Q
    |||||||| ||||||||||| |||||| ||||||||||| |||||||||| | |||||||||||||||||| ||||||||||| ||||||||||||||||    
T  23878913 ttacaacataattaacatga-tcattaccccattcccctcagaatcatcaac-aaccctaaccctcaatttaatcctcaaggttaagcaattaggtcaat 23879010  T
Q  201 tttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||| |||||||| |||| || ||||||||||||||||||||||||||||||    
T  23879011 ttttcgaaattatatataat-tattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 19661703 - 19661456
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||||| |||||||||||  |||||||| ||||| |||    
T  19661703 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattaca 19661604  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtcaat 200  Q
    |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| |||||| | |||    | ||||||||||||||    
T  19661603 ttacaacagaattaacatga-tcaatacccattcccctcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaat 19661506  T
Q  201 tttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||| ||||||| | |||||  ||||  |||||| ||||||||||||||||    
T  19661505 tttcagaaattatagattat-gattatcgagagaaagtctcacccttacct 19661456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 6483523 - 6483770
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| |||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||| ||||| ||     
T  6483523 catcatacaaatcttcatcaattcatcccatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacg 6483622  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| ||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||||||  |   |||    | |||||||||||||||    
T  6483623 ttacaacagaattaacatga-tcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatt 6483721  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  6483722 ttcagaaattatagattat-gattattgagagatagtctcacccttacct 6483770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 6486990 - 6487237
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| |||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||| ||||| ||     
T  6486990 catcatacaaatcttcatcaattcatcccatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacg 6487089  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| ||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||||||  |   |||    | |||||||||||||||    
T  6487090 ttacaacagaattaacatga-tcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatt 6487188  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  6487189 ttcagaaattatagattat-gattattgagagatagtctcacccttacct 6487237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 26583632 - 26583879
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaat-caatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    |||||||||||| |||| |||||||||||| ||||| || || |||| ||| ||||||| ||| ||||| ||||||||| ||||||||||||||||||||    
T  26583632 catcatacaaaatttcaccaattcatccaaccaattctaattacaattcaaattgtgatcacagcaacattatagattaggaattcattctgaacatcac 26583731  T
Q  101 attacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaat 200  Q
     |||||||| | ||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||||||||  |   |||    | |||||||||||||     
T  26583732 tttacaacatatttaacatga-tcattaccctttcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaactatgcaattaggtcaa- 26583829  T
Q  201 tttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  26583830 tttcagaaattatagattat-gattattgagagatagtctcacccttacct 26583879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 21908209 - 21908257
Alignment:
Q  48 tcaatttgtgatgacaacaacagtatagattaagaattcattctgaaca 96  Q
    ||||||| |||| ||||||||| ||||||||||||| ||||||||||||    
T  21908209 tcaatttctgatcacaacaacattatagattaagaaatcattctgaaca 21908257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 23265133 - 23265195
Alignment:
Q  188 caattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||| ||||||||| ||||||| ||| |||  |||| ||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatg-attattgagagatagtctcacccttacct 23265195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 23280201 - 23280263
Alignment:
Q  188 caattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||| ||||||||| ||||||| ||| |||  |||| ||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatg-attattgagagatagtctcacccttacct 23280263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 251
Target Start/End: Complemental strand, 5706054 - 5706026
Alignment:
Q  223 attaatgagagatagtctcacccttacct 251  Q
    |||||||||||||||||||||||||||||    
T  5706054 attaatgagagatagtctcacccttacct 5706026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 21908353 - 21908412
Alignment:
Q  191 ttaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||| ||||||||| ||||||| |||| ||  |||| ||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatg-attattgagagatagtctcacccttacct 21908412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 55499353 - 55499104
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||| ||||||| ||||||||||    
T  55499353 catcatacaaaacttgatcaattcatccaatcaattatattttcaatcaatttatgatcacagcaactgtatagattaagatttcattccgaacatcaca 55499254  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  55499253 ttacaacataattaacatga-tcattacccattcccctcagaatcatcatcaaaccctaaccctcaattttatcctcaaggttaagcagttaggtcaatt 55499155  T
Q  202 tt-ccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  55499154 ttcccgaaattacatattatctattaatgagagatagtctcacccttacct 55499104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 9534133 - 9534380
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| || ||||||||||||||||||  |||||||| ||||| |||    
T  9534133 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacgacaacagtatagattaagttttcattctaaacattaca 9534232  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| ||||||||||| ||| |||||||||| || |||||||||||||||||||||||||||||||  |   |||    | |||||||||||||||    
T  9534233 ttacaacagaattaacatga-tcaatacccattccactcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatt 9534331  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  9534332 ttcagaaattatagattat-gattattgagagatagtctcacccttacct 9534380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 23370756 - 23370508
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||| ||||| |||    
T  23370756 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattaca 23370657  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtcaa 199  Q
    |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| ||| |||||| ||  ||    | |||||||||||||    
T  23370656 ttacaacagaattaacatga-tcaatacccattcccctcagaatcatcatcaaaccctaacccacaa-tttatcttccaaaaactatgcaattaggtcaa 23370559  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||| ||||||| | |||||  |||| |||||||||||| |||||||||||    
T  23370558 ttttcagaaattatagattat-gattattgagagatagtcccacccttacct 23370508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 24192759 - 24193009
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatg-acaacaacagtatagattaagaattcattctgaacatcac 100  Q
    |||||||| ||  |||||||||| ||||||||||| ||||||||||||| ||| ||||  ||| |||||| ||||||||||  |||||||||||||||||    
T  24192759 catcataccaatattcatcaatttatccaatcaatcatattttcaatcagtttatgattcacagcaacagcatagattaagttttcattctgaacatcac 24192858  T
Q  101 attacaacaaaattaacatgattcattaccca-ttcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtc 197  Q
    ||||||||| ||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||| |||||| ||  ||    | |||||||||||    
T  24192859 attacaacagaattaacatga-tcattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaaactatgcaattaggtc 24192956  T
Q  198 aattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  24192957 aattttcagaaattatagattat-gattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 251
Target Start/End: Complemental strand, 16801716 - 16801470
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||||||||||||||| |||||||||||  ||||| ||  |||| |||| ||||||| ||||||  | ||||| ||||||||||||||| ||||||||||    
T  16801716 atcatacaaaacttcaccaattcatccatccaattctaaattcattcaaattgtgatcacaacattattataggttaagaattcattctaaacatcacat 16801617  T
Q  103 tacaacaaaattaacatgattcattac-ccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc-aaggtgaagcaattaggtcaat 200  Q
    |||| || | ||||||||| ||||||| |||||| ||| | |||||||||| |||||||||| ||||||||||| || || |  ||||||| ||||||||    
T  16801616 tacagcatatttaacatga-tcattacaccattctcctcaaaatcatcatc-aaccctaaccttcaattttatcttcaaaagctaagcaatcaggtcaat 16801519  T
Q  201 tttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||| ||||||| ||| |||  |||| ||||||||||||||||||||||||    
T  16801518 tttcagaaattatata-tat-gattattgagagatagtctcacccttacct 16801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 14763009 - 14762760
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | ||| |||||||||||||| |||| ||| || ||  | ||||||||  |||||||||||||| |     
T  14763009 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 14762910  T
Q  101 attacaacaaaattaacatgattcattacccattccccta-agaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtca 198  Q
    ||||||| | |||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||| |||||| | |||    | ||||||||||||    
T  14762909 attacaagagaattaacatgat-cattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtca 14762812  T
Q  199 attttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  14762811 attttcagaaattatagattat-gattatcgagagatagtctcacccttacct 14762760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 20248021 - 20247791
Alignment:
Q  21 aattcatccaatcaattata-ttttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacattacaacaaaattaacat 119  Q
    |||||||||||||| | ||| |||||||||||||| |||| ||| || ||  | ||||||||  |||||||||||||| | ||||||| |||||||||||    
T  20248021 aattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagaaaattaacat 20247922  T
Q  120 gattcattaccca-ttcccctaagaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtcaattttccgaaattacatat 217  Q
    || |||||||||| ||||| | |||||||||||||||||||||||||||| |||||| | |||    | |||||||||||||||||| ||||||| | ||    
T  20247921 ga-tcattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaattttcagaaattatagat 20247824  T
Q  218 tatctattaatgagagatagtctcacccttacct 251  Q
    |||  |||| ||||||||||||||||||||||||    
T  20247823 tat-gattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 38311049 - 38310802
Alignment:
Q  4 tcatacaaaacttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    ||||||| || |||||| ||||||||||||| | ||| |||||||||||||| |||| ||| || ||  | ||||||||  |||||||||||||| | ||    
T  38311049 tcatacacaaattcatccattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatat 38310950  T
Q  103 tacaacaaaattaacatgattcattacccattccccta-agaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtcaat 200  Q
    ||||| | |||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||| |||||| | |||    | ||||||||||||||    
T  38310949 tacaagagaattaacatgat-cattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaat 38310852  T
Q  201 tttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
     ||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  38310851 attcagaaattatagattat-gattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 18929239 - 18929298
Alignment:
Q  191 ttaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||| ||||||||| ||||||| |||| ||  |||| ||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatg-attattgagagatagtctcacccttacct 18929298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 11146 - 11394
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |||||| |||||||||||    
T  11146 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatcacagcaacagtatggattaagatttcattttgaacatcaca 11245  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtcaat 200  Q
    |||||||| ||||||||||| ||||||| |||||||   |||||||||||||||||||||||||||||| |||  | |||    ||||||||||||||||    
T  11246 ttacaacagaattaacatga-tcattactcattccctccagaatcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaat 11344  T
Q  201 tttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  11345 tttcagaaattatagattat-gattattgagagatagtctcacccttacct 11394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 20437274 - 20437026
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||||||||| |||    
T  20437274 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattaca 20437175  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtcaa 199  Q
    |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| |||||| ||  ||    | |||||||||||||    
T  20437174 ttacaacataattaacatga-tcaatacccattcccctcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaaactatgcaattaggtcaa 20437077  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  20437076 ttttcagaaattatagattat-gattattgagagatagtctcacccttacct 20437026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 19663768 - 19663662
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||| ||||||||||  ||||| ||||||   ||| || ||||| || | || |||| ||| ||||| ||||||||||||| ||||||||||||||| ||    
T  19663768 atcacacaaaacttctccaatttatccaacagattctaatttcattccaattctgatcacagcaacattatagattaagaaatcattctgaacatcaaat 19663669  T
Q  103 tacaaca 109  Q
    |||||||    
T  19663668 tacaaca 19663662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 32651563 - 32651625
Alignment:
Q  188 caattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||| ||||||||| ||||||| ||| |||  |||| ||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatg-attattgagagatagtctcacccttacct 32651625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 111491 - 111738
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||| ||||| |||    
T  111491 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattaca 111590  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||  |   |||    | |||||||||||||||    
T  111591 ttacaacagaattaacatga-tcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatt 111689  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  111690 ttcagaaattatagattat-gattattgagagatagtctcacccttacct 111738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 12102 - 11853
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatat-tttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | |||  |||||||||| || |||| ||| |||||  | ||||||||  ||||||||||| || |     
T  12102 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaacttatgatcacagcaacaacaaagattaagttttcattctgaagattat 12003  T
Q  101 attacaacaaaattaacatgattcattacccattccccta-agaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaa 199  Q
    ||||||| | |||||||||||| ||||||||||| ||||  |||||||||||||||||||||| ||||||||  |   |||    | |||||||||||||    
T  12002 attacaagagaattaacatgat-cattacccatttcccttcagaatcatcatcaaaccctaactctcaatttattttccaaaactatgcaattaggtcaa 11904  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  11903 ttttcagaaattatagattat-gattattgagagatagtctcacccttacct 11853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 38144786 - 38144539
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| |||||||||||||||||||||||  || ||||||||||||| |||| |||||||||||||||||||||  |||||||| ||||| |||    
T  38144786 catcatacaaatcttcatcaattcatccaatcaatcgtaatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattaca 38144687  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||| | ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||  |   |||  | | |||||||||||||||    
T  38144686 ttacaatagaattaacatga-tcaatacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaatt 38144588  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  38144587 ttcagaaattatagattat-gattattgagagatagtctcacccttacct 38144539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 28370304 - 28370057
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| |||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||| ||||| ||     
T  28370304 catcatacaaatcttcatcaattcatcccatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacg 28370205  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| ||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||||||  |   |||    | |||||||||||||||    
T  28370204 ttacaacagaattaacatga-tcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatt 28370106  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  28370105 ttcagaaattatagattat-gattattgagagatagtctcacccttacct 28370057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 19512191 - 19512439
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||| ||||| ||     
T  19512191 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacg 19512290  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtcaa 199  Q
    |||||| | ||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||| |||||| ||  ||    | |||||||||||||    
T  19512291 ttacaatagaattaacatga-tcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaa-tttatcttccaaaaactatgcaattaggtcaa 19512388  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  19512389 ttttcagaaattatagattat-gattattgagagatagtctcacccttacct 19512439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 22750945 - 22751194
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | ||| |||||||||||||| |||| ||| || ||  | ||||||||  |||||||||||||| |     
T  22750945 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 22751044  T
Q  101 attacaacaaaattaacatgattcattaccca-ttcccctaagaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtca 198  Q
    ||||||| | ||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||| |||||| | |||    | ||||||||||||    
T  22751045 attacaagagaattaacatga-tcattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtca 22751142  T
Q  199 attttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||| ||||||| | |||||  ||||  |||||| ||||||||||||||||    
T  22751143 attttcagaaattatagattat-gattatcgagagaaagtctcacccttacct 22751194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 18408008 - 18407946
Alignment:
Q  188 caattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||| ||||||||| ||||||| |||||||  |||| ||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatg-attattgagagatagtctcacccttacct 18407946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 23111264 - 23111202
Alignment:
Q  188 caattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||| ||||||||| ||||||| ||| |||  |||| ||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatg-attattgagagatagtctcacccttacct 23111202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 14422789 - 14423037
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||||| |||||||||||  |||||||| ||||| |||    
T  14422789 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattaca 14422888  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtcaa 199  Q
    |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||| |||||| ||  ||    | |||||||||||||    
T  14422889 ttacaacagaattaacatga-tcaatacccattcccctcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaaactatgcaattaggtcaa 14422986  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  14422987 ttttcagaaattatagattat-gattattgagagatagtctcacccttacct 14423037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 16009382 - 16009629
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||| |||| |||||||||||||||||||||  |||||||| ||||| |||    
T  16009382 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcagtttatgatcacaacaacagtatagattaagttttcattctaaacattaca 16009481  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtcaat 200  Q
    |||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||| ||| |||||| | |||    | ||||||||||||||    
T  16009482 ttacaacagaattaacatga-tcaatacccattcccctcagaatcatcatcaaaccttaacccacaa-tttatcttccaaaaccatgcaattaggtcaat 16009579  T
Q  201 tttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  16009580 tttcagaaattatagattat-gattattgagagatagtctcacccttacct 16009629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 15167979 - 15168228
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | ||| |||||||||||||| |||| ||| || ||  | ||||||||  |||||||||||||| |     
T  15167979 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 15168078  T
Q  101 attacaacaaaattaacatgattcattaccca-ttcccctaagaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtca 198  Q
    ||||||| | ||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||| |||||| | |||    | ||||||||||||    
T  15168079 attacaagagaattaacatga-tcattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtca 15168176  T
Q  199 attttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||| ||||||| | |||||  ||||  |||||||||||||||||||||||    
T  15168177 attttcagaaattatagattat-gattatcgagagatagtctcacccttacct 15168228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 10896042 - 10895795
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | ||| |||||||||||||| |||| ||| || ||  | ||||||||  |||||||||||||| |     
T  10896042 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 10895943  T
Q  101 attacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtca 198  Q
    ||||||| | |||||||||||| || ||||||||||||| |||||||||||||||||||||||| ||| |||||| ||  ||    | ||||||||||||    
T  10895942 attacaagagaattaacatgat-caatacccattcccctcagaatcatcatcaaaccctaacccacaa-tttatcttccaaaaactatgcaattaggtca 10895845  T
Q  199 attttccgaaattacatattatctattaatgagagatagtctcacccttac 249  Q
    ||||||  |||||| | |||||  |||| ||||||||||||||||||||||    
T  10895844 attttcaaaaattatagattat-gattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 16677100 - 16677348
Alignment:
Q  5 catacaaaacttcatcaattcatccaatcaattatattttcaat--caatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||||||||| ||| |||||||||||| ||||| || || ||||  ||||| ||||| ||| ||||| ||||||||| |||||||||||||||||||| |    
T  16677100 catacaaaacctcaccaattcatccaaccaattctaattacaatttcaatt-gtgatcacagcaacattatagattaggaattcattctgaacatcactt 16677198  T
Q  103 tacaacaaaattaacatgattcattac-ccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtcaa 199  Q
    ||||||| | ||||||||| ||||||| |||| | ||| | ||||||||||||||||||||||| ||||||||| ||  ||    | |||||||||||||    
T  16677199 tacaacatatttaacatga-tcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaa 16677297  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||  ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  16677298 tttttagaaattatagattat-gattattgagagatagtctcacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 17651336 - 17651584
Alignment:
Q  5 catacaaaacttcatcaattcatccaatcaattatattttcaat--caatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||||||||| ||| |||||||||||| ||||| || || ||||  ||||| ||||| ||| ||||| ||||||||| |||||||||||||||||||| |    
T  17651336 catacaaaacctcaccaattcatccaaccaattctaattacaatttcaatt-gtgatcacagcaacattatagattaggaattcattctgaacatcactt 17651434  T
Q  103 tacaacaaaattaacatgattcattac-ccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtcaa 199  Q
    ||||||| | ||||||||| ||||||| |||| | ||| | ||||||||||||||||||||||| ||||||||| ||  ||    | |||||||||||||    
T  17651435 tacaacatatttaacatga-tcattacaccatcctcctcaaaatcatcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaa 17651533  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||  ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  17651534 tttttagaaattatagattat-gattattgagagatagtctcacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 18873164 - 18873413
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | ||| |||||||||||||| |||| ||| || ||  | ||||||||  |||||||||||||| |     
T  18873164 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 18873263  T
Q  101 attacaacaaaattaacatgattcattaccca-ttcccctaagaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtca 198  Q
    ||||||| | ||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||| |||||| | |||    | ||||||||||||    
T  18873264 attacaagagaattaacatga-tcattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtca 18873361  T
Q  199 attttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||| ||||||| | |||||  ||||  |||||| ||||||||||||||||    
T  18873362 attttcagaaattatagattat-gattatcgagagaaagtctcacccttacct 18873413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 13743527 - 13743683
Alignment:
Q  15 ttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacattacaacaaaatt 114  Q
    |||||||||| |||||| |||  ||| |||||| |||||| |||| ||| ||| |  ||||||||||  |||| |||||||| || | ||||| ||||||    
T  13743527 ttcatcaatttatccaaccaagcataatttcaaccaatttatgatcacagcaataacatagattaagtcttcaatctgaacagcataatacaagaaaatt 13743626  T
Q  115 aacatgattcattaccca-ttcccctaagaatcatcatcaaaccctaaccctcaattt 171  Q
    ||||||| |||||||||| ||| | | | |||||||||||||||||||||||||||||    
T  13743627 aacatga-tcattacccatttctcttcataatcatcatcaaaccctaaccctcaattt 13743683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 21231210 - 21231089
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||||||||||||||  ||||| ||||||   ||| || ||||| |||| || |||| ||||||||| ||||||||||||| |||||||||||| || ||    
T  21231210 atcatacaaaacttctccaatttatccaacagattctaatttcattcaaattctgatcacaacaacattatagattaagaaatcattctgaacaccaaat 21231111  T
Q  103 tacaacaaaattaacatgattc 124  Q
    ||||||| | | ||||||||||    
T  21231110 tacaacacattaaacatgattc 21231089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 11382926 - 11382873
Alignment:
Q  197 caattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||||| ||||||| |||||||  |||| ||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatg-attattgagagatagtctcacccttacct 11382873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 11389403 - 11389350
Alignment:
Q  197 caattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||||| ||||||| |||||||  |||| ||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatg-attattgagagatagtctcacccttacct 11389350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 12710009 - 12709924
Alignment:
Q  87 attctgaacatcacattacaacaa-aattaacatgattcattacccattccccta-agaatcatcatcaaaccctaaccctcaattt 171  Q
    ||||||||||| | |||||||  | |||||||||||| ||||||||||| | ||  | |||||||||||||||||||||||||||||    
T  12710009 attctgaacattatattacaaatagaattaacatgat-cattacccatttctcttcataatcatcatcaaaccctaaccctcaattt 12709924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 13123080 - 13122995
Alignment:
Q  87 attctgaacatcacattacaacaa-aattaacatgattcattacccattccccta-agaatcatcatcaaaccctaaccctcaattt 171  Q
    ||||||||||| | |||||||  | |||||||||||| ||||||||||| | ||  | |||||||||||||||||||||||||||||    
T  13123080 attctgaacattatattacaaatagaattaacatgat-cattacccatttctcttcataatcatcatcaaaccctaaccctcaattt 13122995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 20311249 - 20311196
Alignment:
Q  56 tgatgacaacaacagtatagattaagaattcattctgaacatcacattacaaca 109  Q
    |||| ||| ||||| || |||||||| ||||||||||||||||| |||||||||    
T  20311249 tgatcacagcaacattacagattaaggattcattctgaacatcaaattacaaca 20311196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 44477428 - 44477675
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||| ||||| ||     
T  44477428 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacg 44477527  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| ||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||||||  |   |||    | |||||||||||||||    
T  44477528 ttacaacagaattaacatga-tcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatt 44477626  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  44477627 ttcagaaattatagattat-gattattgagagatagtctcacccttacct 44477675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 44492586 - 44492833
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||| ||||| ||     
T  44492586 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattacg 44492685  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctcaaggtgaagcaattaggtcaatt 201  Q
    |||||||| ||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||||||||  |   |||    | |||||||||||||||    
T  44492686 ttacaacagaattaacatga-tcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaatt 44492784  T
Q  202 ttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  44492785 ttcagaaattatagattat-gattattgagagatagtctcacccttacct 44492833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 8727984 - 8727735
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | ||| |||||||||||||| |||| |||||||||||||||||||||  |||||||||||||| ||    
T  8727984 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 8727885  T
Q  101 attacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtca 198  Q
    ||||||||| ||||||||||| ||| ||||||| ||||| ||||||||| |||||||||||||||||| |||||| ||  ||    | ||||||||||||    
T  8727884 attacaacagaattaacatga-tcaatacccatacccctcagaatcatcgtcaaaccctaaccctcaa-tttatcttccaaaaactatgcaattaggtca 8727787  T
Q  199 attttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||| ||||||| | |||||  |||| |||| |||| ||||||||||||||    
T  8727786 attttcagaaattatagattat-gattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 27941104 - 27940946
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| | ||||||||||||||||||   |||||||||||||| |||    
T  27941104 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcataacaacagtatagattaaattttcattctgaacattaca 27941005  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaa 161  Q
    |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  27941004 ttacaacagaattaacatga-tcaatacccattcccctcagaatcatcatcaaaccctaa 27940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 14056813 - 14056707
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||||||||||||||  ||||| |||||| | ||| || || || |||| || |||| ||||||||| ||||||||||||| ||||||||||||||  ||    
T  14056813 atcatacaaaacttctccaatttatccaaccgattctaattccattcaaattctgatcacaacaacattatagattaagaaatcattctgaacatcgaat 14056714  T
Q  103 tacaaca 109  Q
    |||||||    
T  14056713 tacaaca 14056707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 29643636 - 29643522
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaa-caacagtatagattaagaattcattctgaacatcaca 101  Q
    |||||||||||||||| ||||||||||||   ||| |||||||| || | || |||| |||| ||||| ||||||||||||| |||| ||||||| || |    
T  29643636 atcatacaaaacttca-caattcatccaacatattctattttcattccaattctgatcacaatcaacattatagattaagaaatcatactgaacaccaaa 29643538  T
Q  102 ttacaacaaaattaac 117  Q
    |||||||| |||||||    
T  29643537 ttacaacacaattaac 29643522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 25111782 - 25111888
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||||||||||||||  ||||| |||||| | ||| || ||||| |||| || |||| ||| || || ||||||||| ||||||||||||||||||| |     
T  25111782 atcatacaaaacttctccaatttatccaaccgattctaatttcattcaaattctgatcacatcagcattatagattaggaattcattctgaacatcaaaa 25111881  T
Q  103 tacaaca 109  Q
    |||||||    
T  25111882 tacaaca 25111888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 23482117 - 23482055
Alignment:
Q  188 caattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||| ||||||||| ||||||| ||| |||  |||| ||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatg-attattgagagatagtctcacccttacct 23482055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 14056619 - 14056566
Alignment:
Q  197 caattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||||| ||| ||||||| ||| ||||| ||||||||||||||||||||||||    
T  14056619 caattttcagaatttacatactat-tattattgagagatagtctcacccttacct 14056566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 23866504 - 23866589
Alignment:
Q  87 attctgaacatcacattacaacaa-aattaacatgattcattacccattccccta-agaatcatcatcaaaccctaaccctcaattt 171  Q
    ||||||||||| | |||||||  | |||||||||||| ||||||||||| | ||  | |||||||||||||||||||||||||||||    
T  23866504 attctgaacattatattacaaatagaattaacatgat-cattacccatttctcttcataatcatcatcaaaccctaaccctcaattt 23866589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 25111976 - 25112029
Alignment:
Q  197 caattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||||| ||| ||||||| ||| ||||| ||||||||||||||||||||||||    
T  25111976 caattttcagaatttacatactat-tattattgagagatagtctcacccttacct 25112029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 10446 - 10198
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||| ||||| |||    
T  10446 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattaca 10347  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtcaa 199  Q
    |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| ||| |||||| ||  ||    | |||||||||||||    
T  10346 ttacaacagaattaacatga-tcaatacccattcccctcagaatcatcatcaaaccctaacccacaa-tttatcttccaaaaactatgcaattaggtcaa 10249  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||| ||||||| | |||||  |||| |||||||||||| |||||||||||    
T  10248 ttttcagaaattatagattat-gattattgagagatagtcccacccttacct 10198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 1776 - 1528
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||  |||||||| ||||| |||    
T  1776 catcatacaaatcttcatcaattcatccaatcaatcataatttcaatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattaca 1677  T
Q  102 ttacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtcaa 199  Q
    |||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| ||| |||||| ||  ||    | |||||||||||||    
T  1676 ttacaacagaattaacatga-tcaatacccattcccctcagaatcatcatcaaaccctaacccacaa-tttatcttccaaaaactatgcaattaggtcaa 1579  T
Q  200 ttttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||| ||||||| | |||||  |||| |||||||||||| |||||||||||    
T  1578 ttttcagaaattatagattat-gattattgagagatagtcccacccttacct 1528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 14647 - 14398
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    |||||||| ||  |||||||||| ||||||||||| ||||||||||||| ||| |||| ||| |||||| ||||||||||  ||||||| ||||||||||    
T  14647 catcataccaatattcatcaatttatccaatcaatcatattttcaatcagtttatgatcacagcaacagcatagattaagttttcattcggaacatcaca 14548  T
Q  102 ttacaacaaaattaacatgattcattaccca-ttcccctaagaatcatcatcaaaccctaaccctcaattttatcctc--aaggtgaagcaattaggtca 198  Q
    |||||||| ||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||| |||||| ||  ||    | ||||||||||||    
T  14547 ttacaacagaattaacatga-tcattacccatttcccttcagaatcatcatcaaaccctaaccctcaa-tttatcttccaaaaactatgcaattaggtca 14450  T
Q  199 attttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  14449 attttcagaaattatagattat-gattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 30664 - 30910
Alignment:
Q  7 tacaaaacttcatcaattcatccaatcaattatattttcaat--caatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacatta 104  Q
    ||||||||  || |||||||||||| ||||| || || ||||  ||| ||||||| ||| ||||| ||||||||| |||||||||||| ||||||| |||    
T  30664 tacaaaaccccaccaattcatccaaccaattctaattacaatttcaaattgtgatcacatcaacattatagattaggaattcattctgcacatcacttta 30763  T
Q  105 caacaaaattaacatgattcattac-ccattcccctaagaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtcaattt 202  Q
    ||||| | ||||||||| || |||| |||||||||| | ||||||||||||||||||| ||||||||||| | | |||    | ||||||||||||||||    
T  30764 caacatatttaacatga-tcgttacaccattcccctcaaaatcatcatcaaaccctaatcctcaattttaccttccaaaactatgcaattaggtcaattt 30862  T
Q  203 tccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    || ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  30863 tcagaaattatagattat-gattattgagagatagtctcacccttacct 30910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 17973 - 18222
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcaca 101  Q
    |||||||||||  |||||||||| |||||||||||   | ||||||||||||  |||| ||| |||||  |||| |||||  ||||||||| ||||||||    
T  17973 catcatacaaatattcatcaatttatccaatcaatccaaatttcaatcaattcatgatcacagcaacaacataggttaagttttcattctggacatcaca 18072  T
Q  102 ttacaa-caaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattt--tatcctcaaggtgaagcaattaggtca 198  Q
    |||||| || |||||||||||  |||||||  ||||| | ||||||||||| ||||| |||||||||||||  | |||| ||| | ||||||||||||||    
T  18073 ttacaaacagaattaacatgac-cattaccatttcccgttagaatcatcattaaaccttaaccctcaatttattttcctaaagct-aagcaattaggtca 18170  T
Q  199 attttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||  |||||| | |||||  |||| ||||||||||||||||||||||||    
T  18171 attttcaaaaattatagattatg-attattgagagatagtctcacccttacct 18222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 110 - 265
Alignment:
Q  15 ttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacattacaacaaaatt 114  Q
    |||||||||| |||||| |||| ||| |||||| |||||| |||| ||| ||| |  ||||||||||  |||| |||||||| || | ||||| ||||||    
T  110 ttcatcaatttatccaaccaatcataatttcaaccaatttatgatcacatcaataacatagattaagtcttcaatctgaacaccataatacaagaaaatt 209  T
Q  115 aacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaattt 171  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  210 aacatgat-cattacccattcccctcagaatcatcatcaaaccctaaccctcaattt 265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 11847910 - 11848080
Alignment:
Q  1 tcatcatacaaaacttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatca 99  Q
    |||||||||| || |||||||||||||||||||| | ||| |||||||||||||| |||| ||| |||||  | ||||||||  |||||||||||||| |    
T  11847910 tcatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacatta 11848009  T
Q  100 cattacaacaaaattaacatgattcattacccattcc-cctaagaatcatcatcaaaccctaaccctcaatt 170  Q
     |||| || |  |||||||||| |||||||||||||| | | |||||| |||||||||||||||||||||||    
T  11848010 tattataaaaggattaacatga-tcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatt 11848080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 8046083 - 8045913
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatat-tttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | |||  ||||||||||||| |||| ||| |||||  |  |||||||  |||||||||||||| |     
T  8046083 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaaggattaagttttcattctgaacattat 8045984  T
Q  101 attacaacaaaattaacatgattcattaccca-ttcccctaagaatcatcatcaaaccctaaccctcaattt 171  Q
    ||||||| | ||||||||| | || ||||||| ||||| | |||||  || |||||||||||||||||||||    
T  8045983 attacaagagaattaacatta-tctttacccatttcccttcagaattctcgtcaaaccctaaccctcaattt 8045913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 15407943 - 15408062
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||||||||||||||  ||||| |||||| | ||| || ||||| |||| || |||| ||| ||||| ||||||||||||| ||||||||||||||| ||    
T  15407943 atcatacaaaacttctccaatttatccaaccgattctaatttcattcaaattctgatcacagcaacattatagattaagaaatcattctgaacatcaaat 15408042  T
Q  103 tacaacaaaattaacatgat 122  Q
    ||||||| | | ||||||||    
T  15408043 tacaacacattaaacatgat 15408062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 251
Target Start/End: Original strand, 111726 - 111935
Alignment:
Q  42 tttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacattacaacaaaattaacatgattcattacccattccccta- 140  Q
    ||||||||||||| |||| ||| || ||  | ||||||||  |||||||||||||| | ||||||| | |||||||||||| ||||||||||| ||||      
T  111726 tttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgat-cattacccatttcccttc 111824  T
Q  141 agaatcatcatcaaaccctaaccctcaattttatcct-caaggtgaagcaattaggtcaa-ttttccgaaattacatattatctattaatgagagatagt 238  Q
    |||||||||||||||||||||||||||| |||||| | |||    | ||||||||||||| ||||| ||||||| | |||||  |||| |||||||||||    
T  111825 agaatcatcatcaaaccctaaccctcaa-tttatcttccaaaactatgcaattaggtcaatttttcagaaattatagattat-gattattgagagatagt 111922  T
Q  239 ctcacccttacct 251  Q
    |||||||||||||    
T  111923 ctcacccttacct 111935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 983 - 1152
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattat-attttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | || | ||||||||||||| |||| ||| |||||  | ||||||||  |||||||||||||| |     
T  983 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaaca-agattaagttttcattctgaacattat 1081  T
Q  101 attacaacaaaattaacatgattcattaccca-ttcccctaagaatcatcatcaaaccctaaccctcaattt 171  Q
    ||||||| | ||||||||||| |||||||||| ||||| | | |||| ||||||||||||||||||||||||    
T  1082 attacaagagaattaacatga-tcattacccatttcccttcataatcctcatcaaaccctaaccctcaattt 1152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 49984 - 50153
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattat-attttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | || | ||||||||||||| |||| ||| |||||  | ||||||||  |||||||||||||| |     
T  49984 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaaca-agattaagttttcattctgaacattat 50082  T
Q  101 attacaacaaaattaacatgattcattaccca-ttcccctaagaatcatcatcaaaccctaaccctcaattt 171  Q
    ||||||| | ||||||||||| |||||||||| ||||| | | |||| ||||||||||||||||||||||||    
T  50083 attacaagagaattaacatga-tcattacccatttcccttcataatcctcatcaaaccctaaccctcaattt 50153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 1002 - 753
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattatat-tttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    ||||||||| || |||||||||||||||||||| | |||  ||||||||| ||| |||| ||| |||||  | ||||||||  || || |||||||| |     
T  1002 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcagtttatgatcacatcaacaaca-agattaagtttttatcctgaacattat 904  T
Q  101 attacaacaaaattaacatgattcattacccattccccta-agaatcatcatcaaaccctaaccctcaatt--ttatcctcaaggtgaagcaattaggtc 197  Q
    ||||||| |  |||| |||||| ||||||||||| ||||  | |||| |||||||||||||||||||||||  || |||  ||  | | |||||||||||    
T  903 attacaagagtattatcatgat-cattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaact-atgcaattaggtc 806  T
Q  198 aattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  805 aattttcagaaattatagattat-gattattgagagatagtctcacccttacct 753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 135277 - 135396
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||||||||||||||  |||||  ||||| | ||| || ||||| |||| || |||| ||||||||| ||||||||||||| ||||||||||||||| ||    
T  135277 atcatacaaaacttctccaatttttccaaccgattctaatttcattcaaattctgatcacaacaacattatagattaagaaatcattctgaacatcaaat 135376  T
Q  103 tacaacaaaattaacatgat 122  Q
    ||||||| | | ||||||||    
T  135377 tacaacacattaaacatgat 135396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 40783 - 40677
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||||||||||||||  ||||| |||||| | ||| || ||||| |||| || |||| ||| ||||| ||||||||||||| ||||||||||||||| ||    
T  40783 atcatacaaaacttctccaatttatccaaccgattctaatttcattcaaattctgatcacatcaacattatagattaagaaatcattctgaacatcaaat 40684  T
Q  103 tacaaca 109  Q
    |||||||    
T  40683 tacaaca 40677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 8825 - 8660
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattat-attttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    |||| |||| || ||||||||||||| |||||| |||| | |||||||||| || |||| ||| |||||  |  |||||||  |||||| ||||||| |     
T  8825 catcgtacacaaattcatcaattcatacaatcacttatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattttgaacattaa 8726  T
Q  101 attacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaa 168  Q
    ||||||| | ||||||||| || |||||||||||||  | | ||||||||||||||||||||||||||    
T  8725 attacaagagaattaacataat-cattacccattcca-tcataatcatcatcaaaccctaaccctcaa 8660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 2148 - 1983
Alignment:
Q  2 catcatacaaaacttcatcaattcatccaatcaattat-attttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcac 100  Q
    |||| |||| || ||||||||||||| |||||| | || | |||||||||| || |||| ||| |||||  |  |||||||  |||||| ||||||| |     
T  2148 catcgtacacaaattcatcaattcatacaatcactcatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattatgaacattaa 2049  T
Q  101 attacaacaaaattaacatgattcattacccattcccctaagaatcatcatcaaaccctaaccctcaa 168  Q
    ||||||| | ||||||||| || |||||||||||||   || ||||||||||||||||||||||||||    
T  2048 attacaagagaattaacataat-cattacccattccatcaa-aatcatcatcaaaccctaaccctcaa 1983  T

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Target: scaffold0456 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 807 - 901
Alignment:
Q  15 ttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacattacaaca 109  Q
    |||||||||| ||||||||  | ||| || |||||||||| |||| ||| |||||  | ||||||||  ||||||||||||||||||||||||||    
T  807 ttcatcaatttatccaatccctcataattccaatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaaca 901  T

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Target: scaffold0456; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 7952 - 8046
Alignment:
Q  15 ttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacattacaaca 109  Q
    |||||||||| ||||||||  | ||| || |||||||||| |||| ||| |||||  | ||||||||  ||||||||||||||||||||||||||    
T  7952 ttcatcaatttatccaatccctcataattccaatcaatttatgatcacagcaacaacacagattaagttttcattctgaacatcacattacaaca 8046  T

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Target: scaffold0456; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 921 - 984
Alignment:
Q  187 gcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||||||||||||||| |||| || | |||||  |||| ||||||||||||||||||||||||    
T  921 gcaattaggtcaattttcagaaactatagattatg-attattgagagatagtctcacccttacct 984  T

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Target: scaffold0456; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 8066 - 8129
Alignment:
Q  187 gcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    |||||||||||||||||| |||| || | |||||  |||| ||||||||||||||||||||||||    
T  8066 gcaattaggtcaattttcagaaactatagattatg-attattgagagatagtctcacccttacct 8129  T

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Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 102178 - 102057
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||||||||||||||  ||||| || |||  |||| || ||||| |||| || |||| | ||||||| ||||||||||||| |||||||||| |||| ||    
T  102178 atcatacaaaacttctccaatttattcaacaaattctaatttcattcaaattctgatcataacaacattatagattaagaaatcattctgaatatcaaat 102079  T
Q  103 tacaacaaaattaacatgattc 124  Q
    | ||||| | | ||||||||||    
T  102078 ttcaacacattaaacatgattc 102057  T

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Target: scaffold0124 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 34527 - 34421
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaacatcacat 102  Q
    |||| ||||||||||  ||||| ||||||   ||| || ||||| || | || |||| ||| ||||| ||||||||||||| ||||||||||||||| ||    
T  34527 atcacacaaaacttctccaatttatccaacagattctaatttcattccaattctgatcacagcaacattatagattaagaaatcattctgaacatcaaat 34428  T
Q  103 tacaaca 109  Q
    |||||||    
T  34427 tacaaca 34421  T

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Target: scaffold0261 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 23758 - 23699
Alignment:
Q  65 caacagtatagattaagaattcattctgaacatcacattacaacaaaattaacatgattc 124  Q
    ||||| ||||||||||||| |||| |||||||||| ||||||||| | | ||||||||||    
T  23758 caacattatagattaagaaatcatactgaacatcaaattacaacacattaaacatgattc 23699  T

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Target: scaffold0222 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 16811 - 16873
Alignment:
Q  188 caattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||| ||||||||| ||||||| ||| |||  |||| ||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatg-attattgagagatagtctcacccttacct 16873  T

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Target: scaffold0222; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 16678 - 16718
Alignment:
Q  56 tgatgacaacaacagtatagattaagaattcattctgaaca 96  Q
    |||| ||||||||| ||||||||||||| ||||||||||||    
T  16678 tgatcacaacaacattatagattaagaaatcattctgaaca 16718  T

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Target: scaffold0004 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 116887 - 116949
Alignment:
Q  188 caattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 251  Q
    ||||||| ||||||||| ||||||| ||| |||  |||| ||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatg-attattgagagatagtctcacccttacct 116949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 116754 - 116794
Alignment:
Q  56 tgatgacaacaacagtatagattaagaattcattctgaaca 96  Q
    |||| ||||||||| ||||||||||||| ||||||||||||    
T  116754 tgatcacaacaacattatagattaagaaatcattctgaaca 116794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 258 - 165
Alignment:
Q  3 atcatacaaaacttcatcaattcatccaatcaattatattttcaatcaatttgtgatgacaacaacagtatagattaagaattcattctgaaca 96  Q
    |||||||||||||||  ||||| ||||||  |||| || ||||  |||| || |||  ||||||||  ||||||||||||| ||||||||||||    
T  258 atcatacaaaacttctccaatttatccaacaaattctaatttccttcaaattctgaccacaacaacgttatagattaagaaatcattctgaaca 165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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