View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_high_18 (Length: 213)
Name: NF4562_high_18
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 32101472 - 32101294
Alignment:
| Q |
20 |
agaacacatattaacctaattaattacaacatagaagaagattaatactataagaagtattacaggagctacaaaaacaaaatattgaccaaaaaagatg |
119 |
Q |
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|||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32101472 |
agaacacatatttacctacttaattacaacacagaagaagattaatactataagaagtattacaggagctacaaaaacaaaatattgaccaaaaaagatg |
32101373 |
T |
|
| Q |
120 |
aatgacacgaaaatgaggaccgggagtattaacactcatggattaaattcaccaatatcacaagcttggctggtctctg |
198 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
32101372 |
aatgacacgaaaatgaggactaggagtatcaacactcgtggattaaattcaccaatatcacaagcttgactggtctctg |
32101294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 32103059 - 32102881
Alignment:
| Q |
20 |
agaacacatattaacctaattaattacaacatagaagaagattaatactataagaagtattacaggagctacaaaaacaaaatattgaccaaaaaagatg |
119 |
Q |
| |
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|||||||||||||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |
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| T |
32103059 |
agaacacatattaacctacttaattacaacacataagaagattaatattataagaagtattacaggatctacaaaaacaaaatattgatcaaaaaatatg |
32102960 |
T |
|
| Q |
120 |
aatgacacgaaaatgaggaccgggagtattaacactcatggattaaattcaccaatatcacaagcttggctggtctctg |
198 |
Q |
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|| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |
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| T |
32102959 |
aaggacacgaaaatgaggactaggagtattaacactcgtggattaaattcaccaatatcacaagtttggttggtctctg |
32102881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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