View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4562_high_2 (Length: 578)

Name: NF4562_high_2
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4562_high_2
NF4562_high_2
[»] chr3 (4 HSPs)
chr3 (38-560)||(7033130-7033652)
chr3 (289-493)||(7058691-7058898)
chr3 (207-257)||(13492181-13492231)
chr3 (445-518)||(2996518-2996591)
[»] chr7 (2 HSPs)
chr7 (387-526)||(6889111-6889250)
chr7 (227-268)||(32413847-32413888)
[»] chr6 (7 HSPs)
chr6 (410-515)||(7115543-7115648)
chr6 (410-515)||(7120615-7120720)
chr6 (410-515)||(7124019-7124124)
chr6 (410-498)||(7140733-7140821)
chr6 (410-498)||(8680347-8680435)
chr6 (411-503)||(8656649-8656741)
chr6 (133-183)||(7175106-7175156)
[»] chr5 (3 HSPs)
chr5 (289-360)||(25064385-25064456)
chr5 (289-356)||(25216079-25216146)
chr5 (289-356)||(25280231-25280298)
[»] chr1 (1 HSPs)
chr1 (411-515)||(14288894-14288998)
[»] chr8 (1 HSPs)
chr8 (310-356)||(27701803-27701849)
[»] chr2 (1 HSPs)
chr2 (133-173)||(43874951-43874991)


Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 38 - 560
Target Start/End: Complemental strand, 7033652 - 7033130
Alignment:
Q  38 catcatcactattatgaaagacaaagctacgaagagacaagctggttaatgccggcaaatttagaaaatttggaaataatgtattaaagccaagggaaag 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033652 catcatcactattatgaaagacaaagctacgaagagacaagctggttaatgccggcaaatttagaaaatttggaaataatgtattaaagccaagggaaag 7033553  T
Q  138 tttaagagaagttaaagtgttacatgaaaagaagcatggaggaaagcgttgaaaatcagcatcaacgctgatttgtaactgttggacactgtgtgaaaca 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033552 tttaagagaagttaaagtgttacatgaaaagaagcatggaggaaagcattgaaaatcagcatcaacgctgatttgtaactgttggacactgtgtgaaaca 7033453  T
Q  238 gcatattttacaatcttttttagtaggtaagcctccacaatactcgcgcgatgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaa 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7033452 gcatattttacaatcttttttagtaggtaagcctccacaatactcgcgcgatgagaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaa 7033353  T
Q  338 catgagacacaaatttggtgaaaggatggatagtctcaaagtgtctagtacttaatttaagggtagtaacaaacttccataaattcttccatcttttgga 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033352 catgagacacaaatttggtgaaaggatggatagtctcaaagtgtctagtacttaatttaagggtagtaacaaacttccataaattcttccatcttttgga 7033253  T
Q  438 aagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaagtcactgaggcgatcttgtttcacatca 537  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033252 aagtatacaagtttgtgctgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaagtcactgaggcgatcttgtttcacatca 7033153  T
Q  538 tcgttatattttcgtttcattgt 560  Q
    |||||||||||||||||||||||    
T  7033152 tcgttatattttcgtttcattgt 7033130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 493
Target Start/End: Original strand, 7058691 - 7058898
Alignment:
Q  289 tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggtgaaaggat--gga-tagtctcaaagtgtctag 385  Q
    ||||||||||| |  || ||||| |||||||||| |||| ||||||| |  |||||||||||||||||||||   |  ||| |  ||| ||||||||||     
T  7058691 tgaaaatcaagtgtgtgaagtgctgttgagtcattgcgaagagacaatatctgagacacaaatttggtgaaacccttgggattcttcttaaagtgtctaa 7058790  T
Q  386 tacttaatttaagggtagtaacaaacttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaat 485  Q
     | ||||||||||| | | || | | ||||| | ||||||||||  |||||| || ||||||||||| || |||||||| | ||  ||||| ||||||||    
T  7058791 aagttaatttaaggatgggaagatatttccagagattcttccatgatttggagagaatacaagtttggaccgcctctttagggtccaaaaaggagagaat 7058890  T
Q  486 gtgaagta 493  Q
    ||||||||    
T  7058891 gtgaagta 7058898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 13492231 - 13492181
Alignment:
Q  207 gatttgtaactgttggacactgtgtgaaacagcatattttacaatcttttt 257  Q
    ||||||||||||||||||| |||| ||||| |||||||||| |||| ||||    
T  13492231 gatttgtaactgttggacattgtgcgaaactgcatattttaaaatcctttt 13492181  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 2996518 - 2996591
Alignment:
Q  445 caagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaagtcactgag 518  Q
    |||||||| ||||| ||||| ||||| |||||||| || |||||||| | |||| ||||||  |||||||||||    
T  2996518 caagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtgaaggataacacaatcagttaagtcactgag 2996591  T

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Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 387 - 526
Target Start/End: Complemental strand, 6889250 - 6889111
Alignment:
Q  387 acttaatttaagggtagtaacaaacttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatg 486  Q
    ||||||| ||||||||| || | | ||||| | ||| |||||||||||||| || || |||||||| || || ||| ||||||  ||||| ||||| |||    
T  6889250 acttaatataagggtaggaagatatttccagagattgttccatcttttggatagaatgcaagtttgaacagcgtctatggtgtccaaaaaagagagtatg 6889151  T
Q  487 tgaagtacaacagaatcaggcaagtcactgaggcgatctt 526  Q
    ||||| | |||| |||| || |||||||||||||||||||    
T  6889150 tgaagaataacacaatcgggtaagtcactgaggcgatctt 6889111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 32413888 - 32413847
Alignment:
Q  227 tgtgtgaaacagcatattttacaatcttttttagtaggtaag 268  Q
    |||| |||||||||||||||||||| ||||| ||||||||||    
T  32413888 tgtgcgaaacagcatattttacaatttttttgagtaggtaag 32413847  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 515
Target Start/End: Original strand, 7115543 - 7115648
Alignment:
Q  410 acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaa 509  Q
    ||||||| | |||||||||||||||||| |  | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| ||||||| ||    
T  7115543 acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa 7115642  T
Q  510 gtcact 515  Q
     |||||    
T  7115643 atcact 7115648  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 515
Target Start/End: Original strand, 7120615 - 7120720
Alignment:
Q  410 acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaa 509  Q
    ||||||| | |||||||||||||||||| |  | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| ||||||| ||    
T  7120615 acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa 7120714  T
Q  510 gtcact 515  Q
     |||||    
T  7120715 atcact 7120720  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 515
Target Start/End: Original strand, 7124019 - 7124124
Alignment:
Q  410 acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaa 509  Q
    ||||||| | |||||||||||||||||| |  | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| ||||||| ||    
T  7124019 acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa 7124118  T
Q  510 gtcact 515  Q
     |||||    
T  7124119 atcact 7124124  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 7140733 - 7140821
Alignment:
Q  410 acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaaca 498  Q
    ||||||||| |||||||||||||||||| |  ||||||||||| ||||| | ||| || || ||||| ||||| |||||||||| ||||    
T  7140733 acttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaaca 7140821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 8680347 - 8680435
Alignment:
Q  410 acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaaca 498  Q
    ||||||||| |||||||||||||||||| |  ||||||||||| ||||| | ||| || || ||||| ||||| |||||||||| ||||    
T  8680347 acttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaaca 8680435  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 503
Target Start/End: Original strand, 8656649 - 8656741
Alignment:
Q  411 cttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatc 503  Q
    |||||| | |||||||||||||||||  |  | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| ||||    
T  8656649 cttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatc 8656741  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 7175106 - 7175156
Alignment:
Q  133 gaaagtttaagagaagttaaagtgttacatgaaaagaagcatggaggaaag 183  Q
    ||||| |||||||| |||||||||| |||||||||||||| ||| ||||||    
T  7175106 gaaaggttaagagatgttaaagtgtgacatgaaaagaagcttggcggaaag 7175156  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 25064456 - 25064385
Alignment:
Q  289 tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggtgaaa 360  Q
    |||||||| |||||  |||||| ||| | |||||||||| |||| ||||| |||||||||||||||||||||    
T  25064456 tgaaaatcgagggcaagcagtgaggtagtgtcatcgcgaagagagaaaacgtgagacacaaatttggtgaaa 25064385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 25216146 - 25216079
Alignment:
Q  289 tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggt 356  Q
    |||||||| |||||  |||||| ||| | ||||| |||| |||||||||||||||| |||||||||||    
T  25216146 tgaaaatcgagggctagcagtgaggtagtgtcattgcgaagagacaaaacatgagaaacaaatttggt 25216079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 25280298 - 25280231
Alignment:
Q  289 tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggt 356  Q
    |||||||| |||||  |||||| ||| | ||||| |||| |||||||||||||||| |||||||||||    
T  25280298 tgaaaatcgagggctagcagtgaggtagtgtcattgcgaagagacaaaacatgagaaacaaatttggt 25280231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 515
Target Start/End: Original strand, 14288894 - 14288998
Alignment:
Q  411 cttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaag 510  Q
    |||||| | |||||||||||||||||| ||||| |||||||| || || | |||||| || ||||| || | ||||||||||| |||  ||||||| ||     
T  14288894 cttccagagattcttccatcttttggagagtatgcaagtttgaacggcgtatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaa 14288993  T
Q  511 tcact 515  Q
    |||||    
T  14288994 tcact 14288998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 27701803 - 27701849
Alignment:
Q  310 gcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggt 356  Q
    |||||||||||||||||| ||||||||||  ||||||| ||||||||    
T  27701803 gcggttgagtcatcgcgaagagacaaaacccgagacacgaatttggt 27701849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 43874951 - 43874991
Alignment:
Q  133 gaaagtttaagagaagttaaagtgttacatgaaaagaagca 173  Q
    ||||| |||||||||||||| |||| |||||||||||||||    
T  43874951 gaaagattaagagaagttaatgtgtgacatgaaaagaagca 43874991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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