View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_high_21 (Length: 202)
Name: NF4562_high_21
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 3307586 - 3307775
Alignment:
| Q |
1 |
cgaacactttattaatgacaattttggcagaataattcaaaaccaggttgcatacacaatacaataatgacataacgtttacaaataattacaagaacac |
100 |
Q |
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| T |
3307586 |
cgaacactttattaatgacaattctggcagaataattcaaaaccaggttgcatacacaatacaataatgacataacgtttacaaataattacaagaacac |
3307685 |
T |
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| Q |
101 |
atacacaccaagattcaagagcttcccaaatgttcgagagttggatctttcccactgaccactcaataacttcgagataaccctctatgt |
190 |
Q |
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| T |
3307686 |
atacacaccaagattcgagagcttcccaaatgttcgagagttggatctctcccactgaccactcaataacttcgagataaccctctatgt |
3307775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 3300882 - 3301079
Alignment:
| Q |
1 |
cgaacactttattaatgacaattttggcagaataattcaaaaccaggttgcat--acacaatacaataatgacataacgtttacaaataattacaagaac |
98 |
Q |
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||||||||||||||||||||||| |||| |||||| ||| |||||| |||||| ||||| | ||||||||||| || ||| | ||| |||||||||| |
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| T |
3300882 |
cgaacactttattaatgacaattctggctgaataactcacaaccagattgcatacacacagtgcaataatgacagaaagttcaaaaaatattacaagaaa |
3300981 |
T |
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| Q |
99 |
acatacacaccaagattcaagag-------------cttcccaaatgttcgagagttggatctttcccactgaccactcaataacttcgagataaccc |
183 |
Q |
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| T |
3300982 |
acagacacacaaagattcgagagctcggcctctccccttctcaaatgttcgagagctggatctctcccactaaccactcgataacttcccgataaccc |
3301079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 18999536 - 18999599
Alignment:
| Q |
123 |
ttcccaaatgttcgagagttggatctttcccactgaccactcaataacttcgagataaccctct |
186 |
Q |
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| T |
18999536 |
ttcccaaatgttcgagagttgggtctctcccaataaccactcaataacttccagacaatcctct |
18999599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 10878408 - 10878348
Alignment:
| Q |
126 |
ccaaatgttcgagagttggatctttcccactgaccactcaataacttcgagataaccctct |
186 |
Q |
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||||||||| ||||||||| ||| ||||| | |||||||||||||||| ||| |||||||| |
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| T |
10878408 |
ccaaatgtttgagagttgggtctctcccaataaccactcaataacttccagacaaccctct |
10878348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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