View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_high_3 (Length: 549)
Name: NF4562_high_3
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 119 - 526
Target Start/End: Original strand, 9388348 - 9388755
Alignment:
| Q |
119 |
ttgatgtctagcatatatcttttcttaatgaggaaaactaagcattctatttgtgacacttattcaggttcatacaatgtttctttatccttgtcaacat |
218 |
Q |
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| T |
9388348 |
ttgatgtctagcatatctcttttgttaatgaggaaaactaagcattctatttgtgacacttattcaggttcatgcaatgtttctttatccttgtcaacat |
9388447 |
T |
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| Q |
219 |
caaagagaataactctttttctatcacatgatcgaatatttacgggttttaaatgtttcacataccaatcaagagcctacaaagtaaatagagaatataa |
318 |
Q |
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| T |
9388448 |
caaagagaataactctttttctgtcacatgatagaatatttacgggttttaaatgtttcacataccaatcaagagcctacaaagtaaatagagaatataa |
9388547 |
T |
|
| Q |
319 |
attgacatgaagttatagtacgattcctttctattaagaccaaaatatctggaaactagctaaattaatccatatactagctaggtccatgatttcttca |
418 |
Q |
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| T |
9388548 |
attgacatgaagttatagtatgattcctttctatcaagaccaaaatatctggaaactagctaaattaatccatgtactagctaggtccatgatttcttca |
9388647 |
T |
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| Q |
419 |
aatcttgttgtagtatgtcttatgtgtcattattttcaagagcctcaatttcattttgcatgcatatggaatcaaacgcaatttgaaattatgatgttat |
518 |
Q |
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| T |
9388648 |
attcttgttgtagtatgtcttatgtgtcattattttcaagagcctcaatttcattttgcatgcatatcgaatcaaacgcaatttgaaattatgatgttat |
9388747 |
T |
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| Q |
519 |
gttgcctt |
526 |
Q |
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| T |
9388748 |
gttgcctt |
9388755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 9388239 - 9388294
Alignment:
| Q |
10 |
gacatcatcacatctttgcttgttttagcagttctcatattaatacaacttatacg |
65 |
Q |
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| T |
9388239 |
gacatcatcacatctttgcttgttttagcagttctcatattaatacaacttatacg |
9388294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 9388862 - 9388904
Alignment:
| Q |
483 |
tatggaatcaaacgcaatttg-aaattatgatgttatgttgcc |
524 |
Q |
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| T |
9388862 |
tatggaatcaaacgcaatttggaaattatgatgttatgttgcc |
9388904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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