View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_high_4 (Length: 527)
Name: NF4562_high_4
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4562_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 33393386 - 33393735
Alignment:
Q |
13 |
agcaaagggaggttgtcggaaatataagattagacataaggtttgaagcatgcgaatagcctaagactttttgggatatgtaaaaaatggatattcagac |
112 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| || |||||||||||||| | |||||||| |||||| | |
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T |
33393386 |
agcaaagggaggttgccagaaatataagattagacataaggtttgaagcatgagaatagactgagactttttgggatgt---aaaaatgggtattcaagc |
33393482 |
T |
|
Q |
113 |
ttaatgggtcgggctaacatggacttccatgagaataggacttcgtgttagtgaatgatgaactgtttttatagcggcgtctaagataaggattcaagat |
212 |
Q |
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||||||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||| |||||| |
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T |
33393483 |
ttaatgggtcgagctaacatggacctccattagaataggacttcttgttagtgaatgatgaattgtttttatggtggcgtctaagataaggatacaagat |
33393582 |
T |
|
Q |
213 |
tatct-atacacatggacc-atgatataccaaa-tctttcaacaactaatattgttttgagtatggaaagatgaattgtttgtatgtatattggtctatg |
309 |
Q |
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|||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |
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T |
33393583 |
tatcagatacacatggacccatgatataccaaagtctttcaacaactaatattgtttttagtatggaaagatgaattgttagtacatatattggtctatg |
33393682 |
T |
|
Q |
310 |
caattaaatagaaaaacaagaacatagagataatattgttgggattaagtttc |
362 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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T |
33393683 |
caattaaatagaaaaacaagaacatagagataatattgttgagattaagtttc |
33393735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 33125364 - 33125510
Alignment:
Q |
17 |
aagggaggttgtcggaaatataagattagacataaggtttgaagcatgcgaatagcctaagactttttgggatatgtaaaaaatggatattcagacttaa |
116 |
Q |
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|||| ||||||| | ||||||||||||| ||| |||||||||||||| |||| |||||||||||||| ||| | |||||||| || |||| ||||| |
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T |
33125364 |
aaggtaggttgttgaaaatataagattaaacacaaggtttgaagcattataataacctaagactttttgagatgt---aaaaatgggtaatcaggcttaa |
33125460 |
T |
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Q |
117 |
tgggtcgggctaacatggacttccatgagaataggacttcgtgttagtga |
166 |
Q |
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|||||| ||||||||||| | |||| |||||| || ||| ||||||||| |
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T |
33125461 |
tgggtcaagctaacatggaatgccataagaataagatttcatgttagtga |
33125510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 51834991 - 51835050
Alignment:
Q |
359 |
tttcattcaaaatttactatttaaagtgcttaaagagtatattgggggcactcgttaaca |
418 |
Q |
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||||||| |||||||||||||||||||| ||||||||| | | ||| |||||||||||| |
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|
T |
51834991 |
tttcattaaaaatttactatttaaagtgtttaaagagtgtctcgggaacactcgttaaca |
51835050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 42502249 - 42502319
Alignment:
Q |
95 |
aaaaatggatattcagacttaatgggtcgggctaacatggacttccatgagaataggacttcgtgttagtg |
165 |
Q |
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|||||||| ||| | ||||||||||| || |||||||| || | |||||||||||| | |||||||||||| |
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T |
42502249 |
aaaaatgggtatgcggacttaatgggacgagctaacatagattgccatgagaatagaatttcgtgttagtg |
42502319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 50341896 - 50341858
Alignment:
Q |
359 |
tttcattcaaaatttactatttaaagtgcttaaagagta |
397 |
Q |
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||||||| |||||||||||| |||||||||||||||||| |
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T |
50341896 |
tttcatttaaaatttactatataaagtgcttaaagagta |
50341858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 7852573 - 7852536
Alignment:
Q |
359 |
tttcattcaaaatttactatttaaagtgcttaaagagt |
396 |
Q |
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||||||| |||| ||||||||||||||||||||||||| |
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|
T |
7852573 |
tttcattaaaaacttactatttaaagtgcttaaagagt |
7852536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 50427066 - 50427103
Alignment:
Q |
359 |
tttcattcaaaatttactatttaaagtgcttaaagagt |
396 |
Q |
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||||||| |||||||||||||||||||| ||||||||| |
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|
T |
50427066 |
tttcattaaaaatttactatttaaagtgtttaaagagt |
50427103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 43234867 - 43234904
Alignment:
Q |
359 |
tttcattcaaaatttactatttaaagtgcttaaagagt |
396 |
Q |
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||||||| |||||||||||||||||||||||||||||| |
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T |
43234867 |
tttcattaaaaatttactatttaaagtgcttaaagagt |
43234904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 418
Target Start/End: Original strand, 44537418 - 44537477
Alignment:
Q |
359 |
tttcattcaaaatttactatttaaagtgcttaaagagtatattgggggcactcgttaaca |
418 |
Q |
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||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
T |
44537418 |
tttcattaaaaacttactatttaaagtgcttaaagagtgccccgggggcactcgttaaca |
44537477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 35408013 - 35407949
Alignment:
Q |
298 |
tattggtctatgcaattaaatagaaaaacaagaacatagagataatattgttgggattaagtttc |
362 |
Q |
|
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||||||||| |||||||||||| ||| ||||| ||| ||||||||||||||| |||||||||| |
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T |
35408013 |
tattggtctttgcaattaaataaggaaataagaatataaagataatattgttggaattaagtttc |
35407949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 29083909 - 29083869
Alignment:
Q |
378 |
tttaaagtgcttaaagagtatattgggggcactcgttaaca |
418 |
Q |
|
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||||||||||||||||||||| ||| |||||||||||||| |
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T |
29083909 |
tttaaagtgcttaaagagtatcctggaggcactcgttaaca |
29083869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 52516248 - 52516200
Alignment:
Q |
313 |
ttaaatagaaaaacaagaacatagagataatattgttgggattaagttt |
361 |
Q |
|
|
||||| ||||||||||||| ||||||||||||||| ||||||||||| |
|
|
T |
52516248 |
ttaaaaagaaaaacaagaattgagagataatattgttaggattaagttt |
52516200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 19984782 - 19984834
Alignment:
Q |
31 |
gaaatataagattagacataaggtttgaagcatgcgaatagcctaagactttt |
83 |
Q |
|
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|||||||||| ||||||| || |||||||||||| |||||||| ||||||||| |
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T |
19984782 |
gaaatataaggttagacaaaatgtttgaagcatgagaatagcccaagactttt |
19984834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 31855131 - 31855170
Alignment:
Q |
359 |
tttcattcaaaatttactatttaaagtgcttaaagagtat |
398 |
Q |
|
|
||||||| |||| ||||||||||||||||||||||||||| |
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|
T |
31855131 |
tttcattaaaaacttactatttaaagtgcttaaagagtat |
31855170 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 3146116 - 3146154
Alignment:
Q |
358 |
gtttcattcaaaatttactatttaaagtgcttaaagagt |
396 |
Q |
|
|
|||||||| |||| ||||||||||||||||||||||||| |
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|
T |
3146116 |
gtttcattaaaaacttactatttaaagtgcttaaagagt |
3146154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 7968467 - 7968504
Alignment:
Q |
359 |
tttcattcaaaatttactatttaaagtgcttaaagagt |
396 |
Q |
|
|
||||||| |||| ||||||||||||||||||||||||| |
|
|
T |
7968467 |
tttcattaaaaacttactatttaaagtgcttaaagagt |
7968504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 9276609 - 9276573
Alignment:
Q |
359 |
tttcattcaaaatttactatttaaagtgcttaaagag |
395 |
Q |
|
|
||||||| |||| |||||||||||||||||||||||| |
|
|
T |
9276609 |
tttcattaaaaacttactatttaaagtgcttaaagag |
9276573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 30700568 - 30700536
Alignment:
Q |
323 |
aaacaagaacatagagataatattgttgggatt |
355 |
Q |
|
|
||||||||||| ||||||||||||||||||||| |
|
|
T |
30700568 |
aaacaagaacaaagagataatattgttgggatt |
30700536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 30735016 - 30734984
Alignment:
Q |
323 |
aaacaagaacatagagataatattgttgggatt |
355 |
Q |
|
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||||||||||| ||||||||||||||||||||| |
|
|
T |
30735016 |
aaacaagaacaaagagataatattgttgggatt |
30734984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 2864219 - 2864256
Alignment:
Q |
359 |
tttcattcaaaatttactatttaaagtgcttaaagagt |
396 |
Q |
|
|
||||||| |||| ||||||||||||||||||||||||| |
|
|
T |
2864219 |
tttcattaaaaacttactatttaaagtgcttaaagagt |
2864256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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