View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4562_low_1 (Length: 936)
Name: NF4562_low_1
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 12 - 686
Target Start/End: Original strand, 21768880 - 21769558
Alignment:
| Q |
12 |
atcatcagaagttgatccaaattcctttttattattgaaggaggtacatctcacttattttttgcatttcttttcatttctatcccttctctgtgaataa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21768880 |
atcatcagaagttgatccaaattcctttttattattgaaggaggtacatctcacttattttttgcatttcttttcatttctatcccttctctgtgaataa |
21768979 |
T |
|
| Q |
112 |
ttcctttatgcaactttcaatgtctaattaggttataactgcaaatgctgtcccagtttcagtactttcagtaactgtgcatgttcagtacccctccaag |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21768980 |
ttcctttatgcaactttcaatgtctaattaggttataactgcaaatgctgtcccagtttcagtactttcagtaactgtgcatgttcagtacccctccaag |
21769079 |
T |
|
| Q |
212 |
atgcttttagccataggcaaagtttctggttccattgagatatggctatgtgacatatcctctagggaatttgataagcttggctcatatgatgcacatt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21769080 |
atgcttttagccataggcaaagtttctggttccattgagatatggctatgtgacatatcctctagggaatttgataagcttggctcatatgatgcacatt |
21769179 |
T |
|
| Q |
312 |
attatgctgtaagtttagtctttccgtgnnnnnnnctggagttggttgaagacttcagaatgtattcctctattgatttctgcatttttacatccttcag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21769180 |
attatgctgtaagtttagtctttccgtgtttttttctggagttggttgaagacttcagaatgtattcctctattgatttctgcatttttacatccttcag |
21769279 |
T |
|
| Q |
412 |
gttaccagtttgacttgggcgtttgatggaagatttttgtgcagctgtagccagg-tttattttccctcaagtgatttggtcaattttctatgaaatatc |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21769280 |
gttaccagtttgacttgggcgtttgatggaagatttttgtgcagctgtagccaggttttattttccctcaagtgatttggtcaattttctatgaaatatc |
21769379 |
T |
|
| Q |
511 |
attaaattt---ataataatattccnnnnnnnttataattttgcggacaaatacattacttaatctataccaagttttctatcttccatcagttgcattc |
607 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
21769380 |
attaaatttataataataatattcc-aaaaaattataattatgcggacaaatacattccttaatccataccaagttttctatcttccaccagttgcattc |
21769478 |
T |
|
| Q |
608 |
tgtattttcatttttctagtgaattaaaattgtctggtttaaatcatggattacagatgggtcc-ttcaagtaattgctt |
686 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
21769479 |
tgtattttcatttctctagcgaattaaaattgtcttgttttaatcatggattacagatgggtcctttcatgtaattgctt |
21769558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 692 - 888
Target Start/End: Original strand, 21770029 - 21770225
Alignment:
| Q |
692 |
atttttggaagtcgaatagtgtgggagagaagagggctcttgaatgccttgggaaatttgtacgcatcttgtacttgggtttagttcttgctgtattggc |
791 |
Q |
| |
|
||||||| |||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
21770029 |
atttttgcaagtcgtatagtgtgggagagaaaagggctcttgaatgccttaggaaatttgtacgcatcttgtactcgggtttagttcttgctgtattagc |
21770128 |
T |
|
| Q |
792 |
cggatctcaaccatttctttgtgaataatataaatgaacctttaagtggatccccaacctagcatgattcaagcatggtgttgcatgtccctcttcc |
888 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21770129 |
cggatctcaaccatttctttgtgaataatataaatgaacctttaagtggatccccaacctaacataattcaagcatggtgttgcatgtccctcttcc |
21770225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 501
Target Start/End: Complemental strand, 32924077 - 32923597
Alignment:
| Q |
16 |
tcagaagttgatccaaattcctttttattattgaaggaggtacatctcacttattttttgcatttcttttcatttctatcccttctctgtgaataattcc |
115 |
Q |
| |
|
||||||||||||| || |||||| || ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
32924077 |
tcagaagttgatcaaacttccttcttgttattgaaggaggtacatcccacttaatttttgcatttcttttcatttctatcccttctttgtgaatgattcc |
32923978 |
T |
|
| Q |
116 |
tttatgcaactttcaatgtctaattaggttataactgcaaatgctgtcccagtttcagtactttcagtaactgtgcatgttcagtacccctccaagatgc |
215 |
Q |
| |
|
|| |||||||| | ||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
32923977 |
ttcatgcaactcttaatttctaattaggttataactgtcaatgctgtcccagtttcggtactttcagtaactgtgcatgttcaatatccctccaagatgc |
32923878 |
T |
|
| Q |
216 |
ttttagccataggcaaagtttctggttccattgagatatggctatgtgacatatcctctagggaatttgataagcttggctcatatgatgcacattatta |
315 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32923877 |
tcttagccataggcaaagtttctggttccattgagatatggatatgcgacatatcttctagggaatttgataagcttgggtcatatgatgcacattatta |
32923778 |
T |
|
| Q |
316 |
tgctgtaagtttagtctttccgtgnnnnnnnctggagttggttgaagacttcagaatgtattcctctattgatttctgcatttttacatccttcaggtta |
415 |
Q |
| |
|
|| |||||||| | | ||| | ||||| ||||||||||||| || ||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
32923777 |
tggtgtaagttcatcccctcctt------ttttggagatggttgaagacttgaggttgtattcctctattgatttctccatttttatatccttcaggtta |
32923684 |
T |
|
| Q |
416 |
ccagtttgacttgggcgtttgatggaagatttttgtgcagctgtagccagg-tttattttccctcaagtgatttggtcaattttcta |
501 |
Q |
| |
|
| | || |||||||| |||| |||||| |||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||| |
|
|
| T |
32923683 |
ctggattaacttgggcatttggtggaaggtttttgtgcagctgtagccaggttttattttccctcaagttactcggtcaattttcta |
32923597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3292 times since January 2019
Visitors: 8679