View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_low_12 (Length: 364)
Name: NF4562_low_12
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4562_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 42998841 - 42998510
Alignment:
Q |
17 |
atgaataaacaaaagttaaagatgtgtttgtcttagctaaaatataagttgtttcattgatttctaacaaacttaacatgaaagatattaaaattaaaga |
116 |
Q |
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T |
42998841 |
atgaataaacaagagttaaagatgtgtttgtcttagttaaaatataagttgttttattgatttctaacaaactagacatgaaagatattaaaattaaaga |
42998742 |
T |
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Q |
117 |
aaaataaatatctacaaccatctaatatgacatcgaattctaatacatctatgttttaaccgtcgaattgatcaaccacaagatttaaatcaaatttaaa |
216 |
Q |
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T |
42998741 |
aaaataaatatctacaaccatctaatatgacatcgaattctaagacatctatgttttaaccgtcgaattgatcaaccacaagatttaaatcaaatttaaa |
42998642 |
T |
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Q |
217 |
atccacatattctacttgaagatcacgcacccacaacaaagtgtgagtaagagtctaagaagcttcatttgtatcgtcgaagcatggaggtgagaactat |
316 |
Q |
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T |
42998641 |
atccacatattctacttgaagatcacgcacccacaacaaagtgtaagaaagagtctaagaagcttcacttgtatcgtcgaagcggagaggtgagaactat |
42998542 |
T |
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Q |
317 |
tttattttaacaaaaacaaattaactattatc |
348 |
Q |
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T |
42998541 |
tttattttaacaaaaacaaattaactattatc |
42998510 |
T |
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