View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4562_low_12 (Length: 364)

Name: NF4562_low_12
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4562_low_12
NF4562_low_12
[»] chr5 (1 HSPs)
chr5 (17-348)||(42998510-42998841)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 42998841 - 42998510
Alignment:
17 atgaataaacaaaagttaaagatgtgtttgtcttagctaaaatataagttgtttcattgatttctaacaaacttaacatgaaagatattaaaattaaaga 116  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||    
42998841 atgaataaacaagagttaaagatgtgtttgtcttagttaaaatataagttgttttattgatttctaacaaactagacatgaaagatattaaaattaaaga 42998742  T
117 aaaataaatatctacaaccatctaatatgacatcgaattctaatacatctatgttttaaccgtcgaattgatcaaccacaagatttaaatcaaatttaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
42998741 aaaataaatatctacaaccatctaatatgacatcgaattctaagacatctatgttttaaccgtcgaattgatcaaccacaagatttaaatcaaatttaaa 42998642  T
217 atccacatattctacttgaagatcacgcacccacaacaaagtgtgagtaagagtctaagaagcttcatttgtatcgtcgaagcatggaggtgagaactat 316  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||   ||||||||||||||    
42998641 atccacatattctacttgaagatcacgcacccacaacaaagtgtaagaaagagtctaagaagcttcacttgtatcgtcgaagcggagaggtgagaactat 42998542  T
317 tttattttaacaaaaacaaattaactattatc 348  Q
    ||||||||||||||||||||||||||||||||    
42998541 tttattttaacaaaaacaaattaactattatc 42998510  T

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