View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4562_low_15 (Length: 331)
Name: NF4562_low_15
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 317
Target Start/End: Original strand, 20669075 - 20669401
Alignment:
| Q |
4 |
tggagaatctcttaacaccttctagtaagaaatataggaaataataaaaacctggt---------------ctctccaacacgggacgcaactgtcgtcc |
88 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||| |
|
|
| T |
20669075 |
tggagaatctcttaacaccctctagtaagaaatataggaaataataaaaaccttgtaataattaacattgtctctccaacacgggacacaactgtcgtcc |
20669174 |
T |
|
| Q |
89 |
ttcctattatgcggttcaaaaaatgaactcaaacctgcaagatatacaaaagcatatttaaaacatataaaaatatgtcaatttagtcgctgctgttaag |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
20669175 |
ttcctattatgcggttcaaaaaatgaactcaaacctgcaagctatacaaaagcatatttaaaacata--aaaatatttcaattgagtcgctgctgttaag |
20669272 |
T |
|
| Q |
189 |
atgttggagactacattgttgaatttttgaaaaagagagtgtgatagcttatggaataaagtgatagcttattaaaaaattaatcacagttaccagaaat |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20669273 |
atgttggagactacattgttgaatttttgaaaaagagagtgttatagcttatgggataaattgatagtttattaaaaaattaatcacagttaccagaaat |
20669372 |
T |
|
| Q |
289 |
tcattgagggtgaagacgtaagagcatga |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
20669373 |
tcattgagggtgaagatgtaagagcatga |
20669401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3468 times since January 2019
Visitors: 8698