View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4562_low_16 (Length: 304)

Name: NF4562_low_16
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4562_low_16
NF4562_low_16
[»] chr4 (1 HSPs)
chr4 (45-284)||(26573306-26573544)
[»] chr2 (6 HSPs)
chr2 (45-284)||(10350591-10350827)
chr2 (45-197)||(10346100-10346250)
chr2 (155-284)||(10370364-10370485)
chr2 (45-122)||(10339647-10339724)
chr2 (212-284)||(10339970-10340042)
chr2 (165-206)||(10339902-10339943)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 45 - 284
Target Start/End: Original strand, 26573306 - 26573544
Alignment:
Q  45 tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26573306 tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataa 26573405  T
Q  145 agggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgtttatcacagtattatctttcaac 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||    
T  26573406 agggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaaaactaatgcttatcacagta-tatctttcaac 26573504  T
Q  245 ttgattttccaattctcaataaaaactacaaaatgaaatt 284  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26573505 ttgattttccaattctcaataaaaactacaaaatgaaatt 26573544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 45 - 284
Target Start/End: Original strand, 10350591 - 10350827
Alignment:
Q  45 tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataa 144  Q
    ||||||||||||||||||||||| ||||||||||  |||| |||||||||||||||||| ||||    ||||||||||||||||||||||||||||||||    
T  10350591 tgaaatgatttacaaaagagaacccagaaaggctgcagcaaatagaaaatgcataagaatcaaa----catcctataattcacttataaatatgaaataa 10350686  T
Q  145 agggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgtttatcacagtattatctttcaac 244  Q
    ||||||| |||||||||||||||  || || |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  10350687 agggatacacagttgcttaaaacttagtatcacccatcacagttgcaattcaactcaaagtaatggaatactaatgcttatcacagtattctctttcaac 10350786  T
Q  245 ttgattttccaattct-caataaaaactacaaaatgaaatt 284  Q
    ||||||||||||||||  || ||||||||||||||||||||    
T  10350787 ttgattttccaattctaaaaaaaaaactacaaaatgaaatt 10350827  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 10346100 - 10346250
Alignment:
Q  45 tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataattcacttataaatatgaaataa 144  Q
    |||||| ||||||||||||||||  ||||| | | ||||| ||||||||||||| ||||||||||| |  ||||||||||||| ||| |||||| |||||    
T  10346100 tgaaattatttacaaaagagaaccaagaaaagatgaagcaaatagaaaatgcatcagaaacaaacaga--tcctataattcacgtattaatatggaataa 10346197  T
Q  145 agggatagacagttgcttaaaacgaagcattacccatcacagttgcaattcaa 197  Q
    ||||| |  ||||||||||||||||||||||||||||||||||||||||||||    
T  10346198 agggagacgcagttgcttaaaacgaagcattacccatcacagttgcaattcaa 10346250  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 155 - 284
Target Start/End: Original strand, 10370364 - 10370485
Alignment:
Q  155 agttgcttaaaacgaagcattacccatcacagttgcaattcaactcaaagtaatgcaatactaatgtttatcacagtattatctttcaacttgattttcc 254  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||  | ||||| ||||||||        |||||||||||||||||    
T  10370364 agttgcttaaaacaaagcattacccatcacagttgcaattcaactcaaactaatacagcattaatgcttatcaca--------tttcaacttgattttcc 10370455  T
Q  255 aattctcaataaaaactacaaaatgaaatt 284  Q
     |||||||||||||||||||||||||||||    
T  10370456 tattctcaataaaaactacaaaatgaaatt 10370485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 10339647 - 10339724
Alignment:
Q  45 tgaaatgatttacaaaagagaacacagaaaggctaaagcagatagaaaatgcataagaaacaaacaaacatcctataa 122  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  10339647 tgaaatgatttacaaaagagaacccagaaaggctaaagcaaatagaaaatgcataagaaacaaacaaaaatcctataa 10339724  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 10339970 - 10340042
Alignment:
Q  212 atactaatgtttatcacagtattatctttcaacttgattttccaattctcaataaaaactacaaaatgaaatt 284  Q
    ||||||||| |||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||||||    
T  10339970 atactaatgcttatcacagtattatctttcaacttgatcttcctattcaaaataaaaactacaaaatgaaatt 10340042  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 10339902 - 10339943
Alignment:
Q  165 aacgaagcattacccatcacagttgcaattcaactcaaagta 206  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  10339902 aacgaagcattactcatcatagttgcaattcaactcaaagta 10339943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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