View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_low_17 (Length: 261)
Name: NF4562_low_17
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_low_17 |
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| [»] scaffold0378 (1 HSPs) |
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Alignment Details
Target: scaffold0378 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0378
Description:
Target: scaffold0378; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 7433 - 7197
Alignment:
| Q |
20 |
aaaagctcaactgtttcaacaccttcacctagaaaatcatcagaatcacttgaacctttttctctttcacctccaaaaagcaccactacatcagcttctt |
119 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7433 |
aaaagctcaaatgtttcaacactttcacctagaaaatcatcagaatcacttgaacctttttctctttcacctccaaaaagcaccactacatcagcccctt |
7334 |
T |
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| Q |
120 |
tcaaacagtttaagaaaacttataaacctagaaagaccaaatcagttgatgttcctaaaattcgaaaatctactagaatctccagaaaatcaaaacatgg |
219 |
Q |
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| T |
7333 |
tcaaaacttttaagaaaacttataaacccagaaagaccaaatcagttgatgttcctaaaattcgcaaatccacaagaatctccagaaaaacaaaacatgg |
7234 |
T |
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| Q |
220 |
aaattaagaatctacctttgtcaatcttgatgatgtc |
256 |
Q |
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| T |
7233 |
aaatcaagaacctacctttgtcaacattgatgatgtc |
7197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 21924245 - 21924470
Alignment:
| Q |
31 |
tgtttcaacaccttcacctagaaaatcatcagaatcacttgaacctttttctctttcacctccaaaaagcaccactacatcagcttctttcaaacagttt |
130 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
21924245 |
tgttttaacaccttcccctagaaaatcatcagaatcacttgaacctttttctctttcacctccaaaaagcaccactacatcagcccctttcaaacctttt |
21924344 |
T |
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| Q |
131 |
aagaaaacttataaacctagaaagaccaaatcagttgatgttcctaaaattcgaaaatctactagaatctccagaaaatcaaaacatggaaattaagaat |
230 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||| ||||||| ||||| |
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| T |
21924345 |
aagaaaacttataaacccagaaaaaccaaatcagttgatgttcctaaaattcgcaaatccacaagaatttccagaaaatcaaaacctggaaatcaagaac |
21924444 |
T |
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| Q |
231 |
ctacctttgtcaatcttgatgatgtc |
256 |
Q |
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| T |
21924445 |
ctaccattgtcaatcttgatgatgtc |
21924470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 256
Target Start/End: Complemental strand, 27744824 - 27744603
Alignment:
| Q |
31 |
tgtttcaacaccttcacctagaaaatcatcagaatcacttgaacctttttctctttcacctccaaaaagcaccactacatcagcttctttcaaacagttt |
130 |
Q |
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||||||||||||||| ||||| |||||| | ||||| ||||||||||| | | || ||||||||| ||||| ||||| ||| | ||||||| | |
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| T |
27744824 |
tgtttcaacaccttctcctaggaaatcaactgaatcgactgaaccttttt---tattac-tccaaaaagtaccacaacatccgctccattcaaacctgtc |
27744729 |
T |
|
| Q |
131 |
aagaaaacttataaacctagaaagaccaaatcagttgatgttcctaaaattcgaaaatctactagaatctccag-aaaatcaaaacatggaaattaagaa |
229 |
Q |
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||||||| |||||||||||||| ||||||||||||||| ||| |||||||||||||| || || |||||||| ||||||||| | || |||| || || |
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| T |
27744728 |
aagaaaatctataaacctagaaaagccaaatcagttgatgctcccaaaattcgaaaatcaacaaggatctccagtaaaatcaaacc-tgaaaatcaaaaa |
27744630 |
T |
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| Q |
230 |
tctacctttgtcaatcttgatgatgtc |
256 |
Q |
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|| || |||||||| |||||||||||| |
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| T |
27744629 |
tccacatttgtcaaccttgatgatgtc |
27744603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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