View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_low_18 (Length: 255)
Name: NF4562_low_18
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 49161948 - 49162183
Alignment:
| Q |
18 |
caatattaacacgttccctcaacactatannnnnnncacaatatcttctccaaccattctccctcctctgtctcacccaacacttggagcaactcac--- |
114 |
Q |
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| T |
49161948 |
caatattaacatgttccctcaacactatatttttt-cacaatatcttctccaaccattctccctccactctctcacccaacacttgcagcaactcacgca |
49162046 |
T |
|
| Q |
115 |
ccaccaccaccaacctcattatcaccataacatttaccaatggcttctaatttaaacccaaaa-ataaatataaacattaatcatcatcaagctcaaata |
213 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49162047 |
ccaccaccaccaacctcactatcaccataacatttaccaatggcttctaatttaaactcaaaaaataaatataaacattaatcatcatcaagctcaaata |
49162146 |
T |
|
| Q |
214 |
tccaaatcagaaaacttataacaatttcatctcactc |
250 |
Q |
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||||||||||||||| |||||||||||||| |||||| |
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| T |
49162147 |
tccaaatcagaaaacctataacaatttcatttcactc |
49162183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 31167783 - 31168015
Alignment:
| Q |
18 |
caatattaacacgttccctcaacactatannnnnnncacaatatcttctccaaccattctccctcctctgtctcacccaacacttggagcaactcaccca |
117 |
Q |
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| T |
31167783 |
caatattaacatgttccctcaacactatatttttt-cacaatatcttctccaaccattctacctcctctctctcacccaacacttg---caactcaccca |
31167878 |
T |
|
| Q |
118 |
ccaccacca---acctcattatcaccataacatttaccaatggcttctaatttaaacccaaaa-ataaatataaacattaatcatcatcaagctcaaata |
213 |
Q |
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| T |
31167879 |
ccaccaccaccaacctcactatcaccataacatttaccaatggcttctaatttaaacccaaaaaataaatataaacattaatcatcatcaagctcaaata |
31167978 |
T |
|
| Q |
214 |
tccaaatcagaaaacttataacaatttcatctcactc |
250 |
Q |
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| T |
31167979 |
tccaaatcagaaaacctataacaatttcatttcactc |
31168015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 54 - 250
Target Start/End: Original strand, 53268636 - 53268836
Alignment:
| Q |
54 |
cacaatatcttctccaaccattctccctcctctgtctcacccaacacttggagcaactcacccaccaccacca---acctcattatcaccataacattta |
150 |
Q |
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| T |
53268636 |
cacaatatcttcttcaaccattctacctcctctctctcacccaacacttgcagcaactcacccaccaccaccaccaacctcactatcaccataacattta |
53268735 |
T |
|
| Q |
151 |
ccaatggcttctaatttaaacccaaaa-ataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaatttcatctcact |
249 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
53268736 |
ccaatggcttctaatttaaacccaaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacctataacaatttcatttcact |
53268835 |
T |
|
| Q |
250 |
c |
250 |
Q |
| |
|
| |
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|
| T |
53268836 |
c |
53268836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 23633828 - 23633726
Alignment:
| Q |
148 |
ttaccaatggcttctaatttaaacccaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaatttcatctca |
247 |
Q |
| |
|
|||||||||||||||| | ||| | |||||||||| |||||||||||||||||||| ||||||||| ||| ||| |||||||||||||| | ||| ||| |
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|
| T |
23633828 |
ttaccaatggcttctattgaaaatcaaaaaataaatgtaaacattaatcatcatcaaactcaaatattcaagtcataaaacttataacaactacatttca |
23633729 |
T |
|
| Q |
248 |
ctc |
250 |
Q |
| |
|
||| |
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|
| T |
23633728 |
ctc |
23633726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 237
Target Start/End: Complemental strand, 39147702 - 39147613
Alignment:
| Q |
148 |
ttaccaatggcttctaatttaaacccaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaa |
237 |
Q |
| |
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|||||||||||||||| | ||| | |||||||||| |||||||||||||||||||| ||||||||| ||| ||| |||||||||||||| |
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| T |
39147702 |
ttaccaatggcttctattgaaaatcaaaaaataaatgtaaacattaatcatcatcaaactcaaatattcaagtcataaaacttataacaa |
39147613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 237
Target Start/End: Original strand, 6901016 - 6901105
Alignment:
| Q |
148 |
ttaccaatggcttctaatttaaacccaaaaataaatataaacattaatcatcatcaagctcaaatatccaaatcagaaaacttataacaa |
237 |
Q |
| |
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|||||||||||||||| | ||| | |||||||||| |||||||||||||||||||| ||||||||| ||| ||| |||||||||||||| |
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| T |
6901016 |
ttaccaatggcttctattgaaaatcaaaaaataaatgtaaacattaatcatcatcaaactcaaatattcaagtcataaaacttataacaa |
6901105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 1619639 - 1619595
Alignment:
| Q |
190 |
attaatcatcatcaagctcaaatatccaaatcagaaaacttataa |
234 |
Q |
| |
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|||||||||||| || ||||||||||||| ||| ||||||||||| |
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| T |
1619639 |
attaatcatcattaaactcaaatatccaagtcataaaacttataa |
1619595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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