View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_low_19 (Length: 252)
Name: NF4562_low_19
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 34090228 - 34090460
Alignment:
| Q |
1 |
agaagttcttgagcagccaaaacacaaagcggcagaagaatatgagaatcagcaaagcaatcagccctacccaaaaaaccccataataaattgtgatacg |
100 |
Q |
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| T |
34090228 |
agaagttcttgagcagccaaaacacaaagcggcagaagaatatgagaatcagcaaagcaatcagccctacccaaaaaatcccataataaattgtgatacg |
34090327 |
T |
|
| Q |
101 |
ataaaaggttccatcaa-gtgggttcaatatcatccaaatagaaatcacatatgcaccagctgtgcaaaacactgagagacacgttacaattatgaggaa |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34090328 |
ataaaaggttccatcaacgtgggttcaatatcatccaaatagaaatcacatatgcaccagctgtgcaaaacactgagagacacgttacaattatgaggaa |
34090427 |
T |
|
| Q |
200 |
ccacataacaaacttgttacgaaggggaaatcc |
232 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34090428 |
ccacataacaaacttgttacgaaggggaaatcc |
34090460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 34093369 - 34093433
Alignment:
| Q |
168 |
aacactgagagacacgttacaattatgaggaaccacataacaaacttgttacgaaggggaaatcc |
232 |
Q |
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||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34093369 |
aacaccgagagacacgttacaatcatgagtaaccacataacaaacttgttacgaaggggaaatcc |
34093433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 34093238 - 34093292
Alignment:
| Q |
7 |
tcttgagcagccaaaacacaaagcggcagaagaatatgagaatcagcaaagcaat |
61 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
34093238 |
tcttgagcagccaaaacacaaagcggcagaaaaatatgagaatcagcaaaacaat |
34093292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 34092518 - 34092567
Alignment:
| Q |
183 |
gttacaattatgaggaaccacataacaaacttgttacgaaggggaaatcc |
232 |
Q |
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||||||||||| ||| ||| |||||||||||||||| |||| |||||||| |
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| T |
34092518 |
gttacaattataaggtacctcataacaaacttgttaagaagtggaaatcc |
34092567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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