View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4562_low_2 (Length: 578)
Name: NF4562_low_2
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF4562_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 38 - 560
Target Start/End: Complemental strand, 7033652 - 7033130
Alignment:
Q |
38 |
catcatcactattatgaaagacaaagctacgaagagacaagctggttaatgccggcaaatttagaaaatttggaaataatgtattaaagccaagggaaag |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
7033652 |
catcatcactattatgaaagacaaagctacgaagagacaagctggttaatgccggcaaatttagaaaatttggaaataatgtattaaagccaagggaaag |
7033553 |
T |
|
Q |
138 |
tttaagagaagttaaagtgttacatgaaaagaagcatggaggaaagcgttgaaaatcagcatcaacgctgatttgtaactgttggacactgtgtgaaaca |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
7033552 |
tttaagagaagttaaagtgttacatgaaaagaagcatggaggaaagcattgaaaatcagcatcaacgctgatttgtaactgttggacactgtgtgaaaca |
7033453 |
T |
|
Q |
238 |
gcatattttacaatcttttttagtaggtaagcctccacaatactcgcgcgatgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaa |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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T |
7033452 |
gcatattttacaatcttttttagtaggtaagcctccacaatactcgcgcgatgagaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaa |
7033353 |
T |
|
Q |
338 |
catgagacacaaatttggtgaaaggatggatagtctcaaagtgtctagtacttaatttaagggtagtaacaaacttccataaattcttccatcttttgga |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
7033352 |
catgagacacaaatttggtgaaaggatggatagtctcaaagtgtctagtacttaatttaagggtagtaacaaacttccataaattcttccatcttttgga |
7033253 |
T |
|
Q |
438 |
aagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaagtcactgaggcgatcttgtttcacatca |
537 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
7033252 |
aagtatacaagtttgtgctgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaagtcactgaggcgatcttgtttcacatca |
7033153 |
T |
|
Q |
538 |
tcgttatattttcgtttcattgt |
560 |
Q |
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||||||||||||||||||||||| |
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T |
7033152 |
tcgttatattttcgtttcattgt |
7033130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 493
Target Start/End: Original strand, 7058691 - 7058898
Alignment:
Q |
289 |
tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggtgaaaggat--gga-tagtctcaaagtgtctag |
385 |
Q |
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||||||||||| | || ||||| |||||||||| |||| ||||||| | ||||||||||||||||||||| | ||| | ||| |||||||||| |
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T |
7058691 |
tgaaaatcaagtgtgtgaagtgctgttgagtcattgcgaagagacaatatctgagacacaaatttggtgaaacccttgggattcttcttaaagtgtctaa |
7058790 |
T |
|
Q |
386 |
tacttaatttaagggtagtaacaaacttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaat |
485 |
Q |
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| ||||||||||| | | || | | ||||| | |||||||||| |||||| || ||||||||||| || |||||||| | || ||||| |||||||| |
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T |
7058791 |
aagttaatttaaggatgggaagatatttccagagattcttccatgatttggagagaatacaagtttggaccgcctctttagggtccaaaaaggagagaat |
7058890 |
T |
|
Q |
486 |
gtgaagta |
493 |
Q |
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|
|||||||| |
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|
T |
7058891 |
gtgaagta |
7058898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 13492231 - 13492181
Alignment:
Q |
207 |
gatttgtaactgttggacactgtgtgaaacagcatattttacaatcttttt |
257 |
Q |
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||||||||||||||||||| |||| ||||| |||||||||| |||| |||| |
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T |
13492231 |
gatttgtaactgttggacattgtgcgaaactgcatattttaaaatcctttt |
13492181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 2996518 - 2996591
Alignment:
Q |
445 |
caagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaagtcactgag |
518 |
Q |
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|||||||| ||||| ||||| ||||| |||||||| || |||||||| | |||| |||||| ||||||||||| |
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T |
2996518 |
caagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtgaaggataacacaatcagttaagtcactgag |
2996591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 387 - 526
Target Start/End: Complemental strand, 6889250 - 6889111
Alignment:
Q |
387 |
acttaatttaagggtagtaacaaacttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatg |
486 |
Q |
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||||||| ||||||||| || | | ||||| | ||| |||||||||||||| || || |||||||| || || ||| |||||| ||||| ||||| ||| |
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T |
6889250 |
acttaatataagggtaggaagatatttccagagattgttccatcttttggatagaatgcaagtttgaacagcgtctatggtgtccaaaaaagagagtatg |
6889151 |
T |
|
Q |
487 |
tgaagtacaacagaatcaggcaagtcactgaggcgatctt |
526 |
Q |
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||||| | |||| |||| || ||||||||||||||||||| |
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T |
6889150 |
tgaagaataacacaatcgggtaagtcactgaggcgatctt |
6889111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 32413888 - 32413847
Alignment:
Q |
227 |
tgtgtgaaacagcatattttacaatcttttttagtaggtaag |
268 |
Q |
|
|
|||| |||||||||||||||||||| ||||| |||||||||| |
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T |
32413888 |
tgtgcgaaacagcatattttacaatttttttgagtaggtaag |
32413847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 515
Target Start/End: Original strand, 7115543 - 7115648
Alignment:
Q |
410 |
acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaa |
509 |
Q |
|
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||||||| | |||||||||||||||||| | | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| ||||||| || |
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T |
7115543 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7115642 |
T |
|
Q |
510 |
gtcact |
515 |
Q |
|
|
||||| |
|
|
T |
7115643 |
atcact |
7115648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 515
Target Start/End: Original strand, 7120615 - 7120720
Alignment:
Q |
410 |
acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaa |
509 |
Q |
|
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||||||| | |||||||||||||||||| | | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| ||||||| || |
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|
T |
7120615 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7120714 |
T |
|
Q |
510 |
gtcact |
515 |
Q |
|
|
||||| |
|
|
T |
7120715 |
atcact |
7120720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 410 - 515
Target Start/End: Original strand, 7124019 - 7124124
Alignment:
Q |
410 |
acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaa |
509 |
Q |
|
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||||||| | |||||||||||||||||| | | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| ||||||| || |
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T |
7124019 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7124118 |
T |
|
Q |
510 |
gtcact |
515 |
Q |
|
|
||||| |
|
|
T |
7124119 |
atcact |
7124124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 7140733 - 7140821
Alignment:
Q |
410 |
acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaaca |
498 |
Q |
|
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||||||||| |||||||||||||||||| | ||||||||||| ||||| | ||| || || ||||| ||||| |||||||||| |||| |
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T |
7140733 |
acttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaaca |
7140821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 498
Target Start/End: Original strand, 8680347 - 8680435
Alignment:
Q |
410 |
acttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaaca |
498 |
Q |
|
|
||||||||| |||||||||||||||||| | ||||||||||| ||||| | ||| || || ||||| ||||| |||||||||| |||| |
|
|
T |
8680347 |
acttccatatattcttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaaca |
8680435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 503
Target Start/End: Original strand, 8656649 - 8656741
Alignment:
Q |
411 |
cttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatc |
503 |
Q |
|
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|||||| | ||||||||||||||||| | | ||||||||| ||||| | ||||||||| ||||| ||||| |||||||||| |||| |||| |
|
|
T |
8656649 |
cttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatc |
8656741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 7175106 - 7175156
Alignment:
Q |
133 |
gaaagtttaagagaagttaaagtgttacatgaaaagaagcatggaggaaag |
183 |
Q |
|
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||||| |||||||| |||||||||| |||||||||||||| ||| |||||| |
|
|
T |
7175106 |
gaaaggttaagagatgttaaagtgtgacatgaaaagaagcttggcggaaag |
7175156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 25064456 - 25064385
Alignment:
Q |
289 |
tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggtgaaa |
360 |
Q |
|
|
|||||||| ||||| |||||| ||| | |||||||||| |||| ||||| ||||||||||||||||||||| |
|
|
T |
25064456 |
tgaaaatcgagggcaagcagtgaggtagtgtcatcgcgaagagagaaaacgtgagacacaaatttggtgaaa |
25064385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 25216146 - 25216079
Alignment:
Q |
289 |
tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggt |
356 |
Q |
|
|
|||||||| ||||| |||||| ||| | ||||| |||| |||||||||||||||| ||||||||||| |
|
|
T |
25216146 |
tgaaaatcgagggctagcagtgaggtagtgtcattgcgaagagacaaaacatgagaaacaaatttggt |
25216079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Complemental strand, 25280298 - 25280231
Alignment:
Q |
289 |
tgaaaatcaagggcctgcagtgcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggt |
356 |
Q |
|
|
|||||||| ||||| |||||| ||| | ||||| |||| |||||||||||||||| ||||||||||| |
|
|
T |
25280298 |
tgaaaatcgagggctagcagtgaggtagtgtcattgcgaagagacaaaacatgagaaacaaatttggt |
25280231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 515
Target Start/End: Original strand, 14288894 - 14288998
Alignment:
Q |
411 |
cttccataaattcttccatcttttggaaagtatacaagtttgtactgcctctttggtgttgaaaaatgagagaatgtgaagtacaacagaatcaggcaag |
510 |
Q |
|
|
|||||| | |||||||||||||||||| ||||| |||||||| || || | |||||| || ||||| || | ||||||||||| ||| ||||||| || |
|
|
T |
14288894 |
cttccagagattcttccatcttttggagagtatgcaagtttgaacggcgtatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaa |
14288993 |
T |
|
Q |
511 |
tcact |
515 |
Q |
|
|
||||| |
|
|
T |
14288994 |
tcact |
14288998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 27701803 - 27701849
Alignment:
Q |
310 |
gcggttgagtcatcgcgatgagacaaaacatgagacacaaatttggt |
356 |
Q |
|
|
|||||||||||||||||| |||||||||| ||||||| |||||||| |
|
|
T |
27701803 |
gcggttgagtcatcgcgaagagacaaaacccgagacacgaatttggt |
27701849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 43874951 - 43874991
Alignment:
Q |
133 |
gaaagtttaagagaagttaaagtgttacatgaaaagaagca |
173 |
Q |
|
|
||||| |||||||||||||| |||| ||||||||||||||| |
|
|
T |
43874951 |
gaaagattaagagaagttaatgtgtgacatgaaaagaagca |
43874991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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