View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4562_low_23 (Length: 244)

Name: NF4562_low_23
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4562_low_23
NF4562_low_23
[»] chr2 (5 HSPs)
chr2 (1-231)||(29894324-29894554)
chr2 (1-231)||(24543091-24543321)
chr2 (5-231)||(36364918-36365144)
chr2 (27-152)||(40287046-40287171)
chr2 (54-129)||(12555415-12555490)
[»] chr1 (16 HSPs)
chr1 (1-231)||(11351600-11351830)
chr1 (3-228)||(6784159-6784384)
chr1 (1-213)||(21515101-21515311)
chr1 (40-231)||(20639468-20639659)
chr1 (1-231)||(32988889-32989121)
chr1 (5-100)||(2536489-2536584)
chr1 (3-131)||(44839862-44839990)
chr1 (27-155)||(51080701-51080829)
chr1 (20-100)||(39648379-39648459)
chr1 (1-64)||(52823476-52823539)
chr1 (32-96)||(5811388-5811452)
chr1 (42-100)||(2114365-2114423)
chr1 (42-100)||(3601265-3601323)
chr1 (41-98)||(26418788-26418845)
chr1 (41-98)||(32108435-32108492)
chr1 (42-100)||(17321884-17321942)
[»] chr3 (15 HSPs)
chr3 (1-231)||(51976638-51976868)
chr3 (1-231)||(36684783-36685013)
chr3 (1-227)||(8705594-8705820)
chr3 (1-227)||(9057481-9057707)
chr3 (1-219)||(45736356-45736574)
chr3 (1-231)||(4978417-4978648)
chr3 (36-180)||(49758956-49759100)
chr3 (71-227)||(26390800-26390956)
chr3 (28-152)||(38998864-38998988)
chr3 (7-95)||(47165354-47165442)
chr3 (27-152)||(37796562-37796687)
chr3 (41-98)||(32073607-32073664)
chr3 (3-65)||(26390569-26390631)
chr3 (53-109)||(20916409-20916465)
chr3 (53-109)||(20925371-20925427)
[»] chr8 (5 HSPs)
chr8 (1-231)||(18481111-18481341)
chr8 (3-131)||(26440784-26440912)
chr8 (28-229)||(32536156-32536357)
chr8 (3-100)||(7251115-7251212)
chr8 (29-98)||(11911395-11911464)
[»] chr4 (10 HSPs)
chr4 (1-231)||(43989261-43989490)
chr4 (3-179)||(19315895-19316071)
chr4 (1-94)||(43813174-43813267)
chr4 (3-100)||(1394134-1394232)
chr4 (58-100)||(17283581-17283623)
chr4 (41-98)||(13200849-13200906)
chr4 (41-98)||(47783000-47783057)
chr4 (56-100)||(9633067-9633111)
chr4 (42-100)||(35096917-35096975)
chr4 (52-100)||(1479285-1479333)
[»] chr6 (5 HSPs)
chr6 (1-231)||(942571-942801)
chr6 (3-100)||(4513081-4513178)
chr6 (27-98)||(19047098-19047169)
chr6 (29-98)||(13757532-13757601)
chr6 (41-98)||(15950809-15950866)
[»] chr5 (10 HSPs)
chr5 (1-194)||(41197359-41197552)
chr5 (1-220)||(36779406-36779622)
chr5 (1-128)||(30376430-30376557)
chr5 (1-155)||(34905529-34905683)
chr5 (1-50)||(12378611-12378660)
chr5 (28-144)||(14856952-14857068)
chr5 (1-100)||(12714850-12714949)
chr5 (1-100)||(12776081-12776180)
chr5 (7-100)||(29985437-29985530)
chr5 (52-100)||(34530-34578)
[»] chr7 (11 HSPs)
chr7 (1-231)||(23820401-23820631)
chr7 (1-227)||(24808774-24808980)
chr7 (3-131)||(21118373-21118500)
chr7 (13-100)||(40901820-40901907)
chr7 (42-98)||(10325110-10325166)
chr7 (52-100)||(12980739-12980787)
chr7 (42-101)||(20492488-20492547)
chr7 (41-98)||(29526837-29526894)
chr7 (44-98)||(8321192-8321246)
chr7 (41-98)||(21588151-21588208)
chr7 (46-126)||(42029863-42029943)
[»] scaffold0041 (1 HSPs)
scaffold0041 (13-100)||(48111-48198)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 29894324 - 29894554
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29894324 tcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 29894423  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894424 gaaaattacaatcgaacaactgtctacaagcctgaataatacaatctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 29894523  T
Q  201 atccaaaacaaaatcaacattgtcataatga 231  Q
    |||||||||||||||||||||||||||||||    
T  29894524 atccaaaacaaaatcaacattgtcataatga 29894554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 24543321 - 24543091
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  24543321 tcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcatcctattgaactcgacatgagagttct 24543222  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543221 gaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 24543122  T
Q  201 atccaaaacaaaatcaacattgtcataatga 231  Q
    |||||||||||||||||||||||||||||||    
T  24543121 atccaaaacaaaatcaacattgtcataatga 24543091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 36365144 - 36364918
Alignment:
Q  5 cataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaa 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||  ||    
T  36365144 cataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgacctcattggcttgcctcctattgaactcgacatgggagttctgaaa 36365045  T
Q  105 actacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatcc 204  Q
    |  ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  36365044 atgacaatcgaacaactgcctacaagtatgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagacttggaatcc 36364945  T
Q  205 aaaacaaaatcaacattgtcataatga 231  Q
    |||||||||||||||||||||||||||    
T  36364944 aaaacaaaatcaacattgtcataatga 36364918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 40287046 - 40287171
Alignment:
Q  27 agatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtcta 126  Q
    ||||||||||||||| ||||||||||||| ||||||||| | ||||||| |||| |||| |||||||||||| |  ||||||   |  ||||||||||||    
T  40287046 agatggggctaccctcgctaattcatgagtgaccccattagcttgcctcatattaaacttgacatgagagttttgaaaactatcctgaaacaactgtcta 40287145  T
Q  127 caagcctgaataatacaacctagttc 152  Q
    || ||   |||||||||||| |||||    
T  40287146 catgcagtaataatacaaccaagttc 40287171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 12555415 - 12555490
Alignment:
Q  54 agcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaa 129  Q
    ||||||||||||   ||||||||||||||||| ||||||||||||||  |||||   ||  |||||||||||||||    
T  12555415 agcgaccccattaacttgcctcctattgaacttgacatgagagttctgaaaactgttatgtaacaactgtctacaa 12555490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 11351600 - 11351830
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11351600 tcatcataaacgtggaagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 11351699  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11351700 gaaaattacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 11351799  T
Q  201 atccaaaacaaaatcaacattgtcataatga 231  Q
    |||||||||||||||||||||||||||||||    
T  11351800 atccaaaacaaaatcaacattgtcataatga 11351830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 6784384 - 6784159
Alignment:
Q  3 atcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctag 102  Q
    ||||||||||||| || ||| ||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||      
T  6784384 atcataaacgtggaagctagtatgagatggagctaccctagttaattcataagcgaccccattggcttgcctcctattgaactcgacatgagagttctga 6784285  T
Q  103 aaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaat 202  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||    
T  6784284 aaataacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttaaattaaaacgttcaacaagagacttgcaat 6784185  T
Q  203 ccaaaacaaaatcaacattgtcataa 228  Q
    ||||||||||||||||||||||||||    
T  6784184 ccaaaacaaaatcaacattgtcataa 6784159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 21515311 - 21515101
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||    
T  21515311 tcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgag--ttct 21515214  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| |||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21515213 gaaaattacattcgaacaactgcctacaaacctgaaaaatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagacttgca 21515114  T
Q  201 atccaaaacaaaa 213  Q
    |||||||||||||    
T  21515113 atccaaaacaaaa 21515101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 20639659 - 20639468
Alignment:
Q  40 ctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctgaataa 139  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||  ||| |||||||||||||||| ||||||||||||||||    
T  20639659 ctagctaattcatgagtgacctcattggcttgcctcctattgaactcaacatgagagttctgaaaattacaatcgaacaactgcctacaagcctgaataa 20639560  T
Q  140 tacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatga 231  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  20639559 tacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaacttggaatccaaaacaaaatcaacattgtcataatga 20639468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 32988889 - 32989121
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattga----actcgacatgagag 96  Q
    |||||||||||| || || ||||||||||||||||||||||| |||||||||||||||    ||||| |||||||||||  |    ||||||||||||||    
T  32988889 tcatcataaacgcggaagctagcatgagatggggctaccctaactaattcatgagcgaaa--attggcttgcctcctatatatataactcgacatgagag 32988986  T
Q  97 ttctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagact 196  Q
    ||||  ||  |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||| |||    
T  32988987 ttctgaaagttacaatcgaacaactgcctacaagtctgaataatacaacctagttcactgctatcacgtaagtttaaattaaaacgttcaacaacatact 32989086  T
Q  197 tgcaatccaaaacaaaatcaacattgtcataatga 231  Q
    || ||||| |||||||||| |||| ||||||||||    
T  32989087 tggaatccgaaacaaaatccacatcgtcataatga 32989121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 2536489 - 2536584
Alignment:
Q  5 cataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2536489 cataaacatgggagctagcatgagatggggctaccctaactaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 2536584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 44839862 - 44839990
Alignment:
Q  3 atcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctag 102  Q
    ||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||      
T  44839862 atcataaacgtaggagctagcattagatggggctaccctagctaactcatgagcgaccccattaacttgcctcctattgaactcgacatgagagttctga 44839961  T
Q  103 aaactacaatcgaacaactgtctacaagc 131  Q
    ||||||   || ||||| |||||||||||    
T  44839962 aaactattgtcaaacaattgtctacaagc 44839990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 51080701 - 51080829
Alignment:
Q  27 agatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtcta 126  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |  ||||||   |  ||||||||||||    
T  51080701 agatggggctaccctcgctaattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtcta 51080800  T
Q  127 caagcctgaataatacaacctagttcact 155  Q
    || ||   |||||||||||| ||||||||    
T  51080801 catgcagtaataatacaaccaagttcact 51080829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 39648379 - 39648459
Alignment:
Q  20 tagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||||||||||||||||||  |||||||||||||||||||  ||| | ||| || ||||| ||||||||| |||||||||    
T  39648379 tagcatgagatggggctacctgagctaattcatgagcgacctaattagcttgacttctattaaactcgacacgagagttct 39648459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 52823476 - 52823539
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccat 64  Q
    ||||| ||||| | |||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  52823476 tcatcgtaaacataggagttagtatgagatggagctaccctaactaattcatgagcgaccccat 52823539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 5811452 - 5811388
Alignment:
Q  32 gggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagag 96  Q
    ||||| || ||||||||| |||||| |||||||| ||||| |||||||| |||||||||||||||    
T  5811452 gggctgccttagctaattaatgagctaccccatttgtttgtctcctattaaactcgacatgagag 5811388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 2114423 - 2114365
Alignment:
Q  42 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||||||| |||||||||||||| | || | |||| ||||||||||||||||||||||    
T  2114423 agctaattcgtgagcgaccccattcgcttccttcctgttgaactcgacatgagagttct 2114365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 3601265 - 3601323
Alignment:
Q  42 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||| || ||||| ||| |||| | ||||||||||||||||||||||||||||||||    
T  3601265 agctaactcgtgagcaacctcattcgcttgcctcctattgaactcgacatgagagttct 3601323  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 26418788 - 26418845
Alignment:
Q  41 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  26418788 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 26418845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 32108492 - 32108435
Alignment:
Q  41 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  32108492 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32108435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 17321942 - 17321884
Alignment:
Q  42 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||| || ||||| |||| ||| | ||||||||| ||||||||||||||||||||||    
T  17321942 agctaactcgtgagctaccctatttgcttgcctcctgttgaactcgacatgagagttct 17321884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 51976868 - 51976638
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  51976868 tcatcataaacgtgggagctagcatgagatggagctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcggcatgagagttct 51976769  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51976768 gaaaattacaatcaaacaactttctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 51976669  T
Q  201 atccaaaacaaaatcaacattgtcataatga 231  Q
    |||||||||||||||||||||||||||||||    
T  51976668 atccaaaacaaaatcaacattgtcataatga 51976638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 36685013 - 36684783
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  36685013 tcatcataaacgtgagagctagcatgagatggggctaccctagctaattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagttct 36684914  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  36684913 gaaaattacaatcgaacaactgtctacaagcctgaatgatacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaacttgca 36684814  T
Q  201 atccaaaacaaaatcaacattgtcataatga 231  Q
    |||||||||||||||||||||||||||||||    
T  36684813 atccaaaacaaaatcaacattgtcataatga 36684783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8705820 - 8705594
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||    
T  8705820 tcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagttct 8705721  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||| |    
T  8705720 gaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatacttgga 8705621  T
Q  201 atccaaaacaaaatcaacattgtcata 227  Q
    |||||||||||||||||||| ||||||    
T  8705620 atccaaaacaaaatcaacatggtcata 8705594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9057707 - 9057481
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||    
T  9057707 tcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagttct 9057608  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||| |    
T  9057607 gaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatacttgga 9057508  T
Q  201 atccaaaacaaaatcaacattgtcata 227  Q
    |||||||||||||||||||| ||||||    
T  9057507 atccaaaacaaaatcaacatggtcata 9057481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 45736574 - 45736356
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||  ||||||||| |||||||||||||||||||||||||||||||    
T  45736574 tcatcataaacgtgggagttagcatgagatgaggctaccctagctaatttacgagcgttcccattggtctgcctcctattgaactcgacatgagagttct 45736475  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| ||||||||||||| || |||||| ||| |||||||||||||| ||||||||||||| |||| ||| |||||||| ||| ||||||| ||||| |    
T  45736474 gaaaattacaatcgaacaattgcctacaaacctaaataatacaacctaattcactgctatcatctagatttaaattaaaacgttgaacaacaaacttgaa 45736375  T
Q  201 atccaaaacaaaatcaaca 219  Q
    |||||||||||||||||||    
T  45736374 atccaaaacaaaatcaaca 45736356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 4978417 - 4978648
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||| | | |||||||||||||||| |||||| ||||||||||||||| ||||| |||||| ||| ||| |||| |||||||||||||||||||    
T  4978417 tcatcataaatgcgcgagttagcatgagatgtggctacgctagctaattcatgaacgacctcattggcttgtctcatattaaactcgacatgagagttct 4978516  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttc-aacaacagacttgc 199  Q
      ||| || || ||||||| || ||||||||| |||||||||||||||||| |||  ||||||||||||||||||||||| |||| ||||||| | |||     
T  4978517 gaaaattataaccgaacaagtgcctacaagccagaataatacaacctagtttactattatcacctaggtttgaattaaaacgttcaaacaacatatttgg 4978616  T
Q  200 aatccaaaacaaaatcaacattgtcataatga 231  Q
    ||||||||||||||| |||||||||| |||||    
T  4978617 aatccaaaacaaaattaacattgtcagaatga 4978648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 49758956 - 49759100
Alignment:
Q  36 taccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctga 135  Q
    ||||||||  ||||||||||||| |||||| | |||||||||||||||| |||||| ||||||||  ||| ||||| | | |||| | ||||||| ||||    
T  49758956 taccctagtcaattcatgagcgatcccattagcttgcctcctattgaacccgacataagagttctgaaaattacaagcaagcaacagcctacaagtctga 49759055  T
Q  136 ataatacaacctagttcactgctatcacctaggtttgaattaaaa 180  Q
    ||||| |||||||||||||| |||||  |||||||||||||||||    
T  49759056 ataatgcaacctagttcactactatcctctaggtttgaattaaaa 49759100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 227
Target Start/End: Original strand, 26390800 - 26390956
Alignment:
Q  71 gcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtt 170  Q
    |||||||||||||||||||| ||||||| || ||||||||| | ||||||||||||||||| || ||||| |||||||||||||| |||||  |||||||    
T  26390800 gcctcctattgaactcgacacgagagttataaaaactacaagcaaacaactgtctacaagcttgtataatgcaacctagttcactactatcttctaggtt 26390899  T
Q  171 tgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcata 227  Q
    | | |||||| | || ||||  | |||| |||||||| |||| || ||||| |||||    
T  26390900 tcagttaaaacgatctacaagtgccttgaaatccaaagcaaagtcgacattatcata 26390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 38998988 - 38998864
Alignment:
Q  28 gatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 127  Q
    |||||||||||||| |||||||| |||||||||||||| | |||||||||||| ||||||||||||||||| |  ||||||   |  |||||||||||||    
T  38998988 gatggggctaccctcgctaattcgtgagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctac 38998889  T
Q  128 aagcctgaataatacaacctagttc 152  Q
    | |||  |||||||||||| |||||    
T  38998888 aggccgtaataatacaaccaagttc 38998864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 47165354 - 47165442
Alignment:
Q  7 taaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgaga 95  Q
    |||||||||||| ||||||||||||||||| || |  |||||||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  47165354 taaacgtgggagctagcatgagatggggctgcctttcctaattcacgagcgaccccattgacttgcctcctattgaactcgacgtgaga 47165442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 37796687 - 37796562
Alignment:
Q  27 agatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtcta 126  Q
    ||||||||||||||| |||||||  ||||||||| |||| | |||||||||||| ||||||||||||| ||| |  ||||||   |  ||||||||||||    
T  37796687 agatggggctaccctcgctaatttgtgagcgacctcattagcttgcctcctattaaactcgacatgagtgttttgaaaactatcctgaaacaactgtcta 37796588  T
Q  127 caagcctgaataatacaacctagttc 152  Q
    || |||  |||||||||||| |||||    
T  37796587 caggccgtaataatacaaccaagttc 37796562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 32073607 - 32073664
Alignment:
Q  41 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  32073607 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32073664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 26390569 - 26390631
Alignment:
Q  3 atcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccatt 65  Q
    |||||||||||| |||||||||||||| ||| ||||    |||||||||||||||| ||||||    
T  26390569 atcataaacgtgagagttagcatgagacgggactacatgtgctaattcatgagcgatcccatt 26390631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 20916465 - 20916409
Alignment:
Q  53 gagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactac 109  Q
    |||||||| |||| | |||||||||||||||||| |||| ||||||||  |||||||    
T  20916465 gagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaactac 20916409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 20925427 - 20925371
Alignment:
Q  53 gagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactac 109  Q
    |||||||| |||| | |||||||||||||||||| |||| ||||||||  |||||||    
T  20925427 gagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaactac 20925371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 18481341 - 18481111
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||  || |||||||||||||||||||||||||||||    
T  18481341 tcatcataaacgtgggagctagcatgagatggggctaccctagctaatttatgagtgaccccattgacttacctcctattgaactcgacatgagagttct 18481242  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18481241 gaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 18481142  T
Q  201 atccaaaacaaaatcaacattgtcataatga 231  Q
    |||||||||||||||||||||||||||||||    
T  18481141 atccaaaacaaaatcaacattgtcataatga 18481111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 26440912 - 26440784
Alignment:
Q  3 atcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctag 102  Q
    ||||||| |||| ||| |||||| ||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||||     
T  26440912 atcataatcgtgagagctagcattagatggggctaccctagctaactcatgagcaaccccattagcttgcctcctattgaactcgacatgagagttctaa 26440813  T
Q  103 aaactacaatcgaacaactgtctacaagc 131  Q
    ||||||   || |||||||||||||||||    
T  26440812 aaactattgtcaaacaactgtctacaagc 26440784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 32536156 - 32536357
Alignment:
Q  28 gatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 127  Q
    |||||||||||||||||||||||| |||||||||||||   |||  | | |||||||||||||| |||||||   ||| ||||| | | ||| ||| |||    
T  32536156 gatggggctaccctagctaattcacgagcgaccccattaacttgttttcaattgaactcgacataagagttcataaaattacaagcaatcaattgtttac 32536255  T
Q  128 aagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcata 227  Q
    ||||||||||||||||||||||||||||  ||||  |||||||||||| |||  | || |||| | ||||| |||||||| ||||||| ||||  |||||    
T  32536256 aagcctgaataatacaacctagttcactattatcgtctaggtttgaatgaaagcgatctacaataaacttgtaatccaaagcaaaatcgacatgatcata 32536355  T
Q  228 at 229  Q
    ||    
T  32536356 at 32536357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 7251212 - 7251115
Alignment:
Q  3 atcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||||| | ||| || |||||||||||||||||||| ||| |||| |||||| || |||||||||||||||||||||||||||||||| ||||||||    
T  7251212 atcataatcatggaagctagcatgagatggggctaccttagttaatgcatgagtgatcccattggtttgcctcctattgaactcgacataagagttct 7251115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 11911395 - 11911464
Alignment:
Q  29 atggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    |||||||| ||| |||||| || || | ||||||||| |||| |||||||||||||||||||||||||||    
T  11911395 atggggcttcccgagctaactcgtgggggaccccattcgtttacctcctattgaactcgacatgagagtt 11911464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 43989261 - 43989490
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  43989261 tcatcataaacgtgggagctagcatgagatggggctaccctaactaattcatgagcgacctcattggcttgcctcctattgaactcgacatgagcgttct 43989360  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
    | ||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  43989361 aaaaa-tacaatcgaacaattgtctgcaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacaaacttgca 43989459  T
Q  201 atccaaaacaaaatcaacattgtcataatga 231  Q
    |||||||||||||||||||||||||||||||    
T  43989460 atccaaaacaaaatcaacattgtcataatga 43989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 179
Target Start/End: Original strand, 19315895 - 19316071
Alignment:
Q  3 atcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctag 102  Q
    ||||||| |||||||| || ||| || ||||||||||   |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||      
T  19315895 atcataagcgtgggagctaccataaggtggggctacctgtgctaattcatgaacgactccattggcttgcctcctattgaactcgacatgagagttctga 19315994  T
Q  103 aaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaa 179  Q
    |||||   | | ||||||| ||||||||| || ||||| |||||||| ||||| |||||| |||  ||||| |||||    
T  19315995 aaactgttaacaaacaactatctacaagcatgtataatgcaacctagctcactactatcatctacatttgacttaaa 19316071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 43813174 - 43813267
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgag 94  Q
    |||||| ||||| | ||| ||| ||||||||||||||||||| ||||||||||| |||||||||||  ||| || |||||||||||||||||||    
T  43813174 tcatcaaaaacgagagagctagtatgagatggggctaccctaactaattcatgaacgaccccattgacttgtctgctattgaactcgacatgag 43813267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 1394232 - 1394134
Alignment:
Q  3 atcataaacgtgggagttagcatgagatgggg-ctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||| | ||||||| |||||| |||||||| ||||    |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  1394232 atcatagatgtgggagctagcattagatggggactacttgtgctaattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagttct 1394134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 17283581 - 17283623
Alignment:
Q  58 accccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||| ||||||||||||||||||||||||| ||||||||    
T  17283581 accccattcgtttgcctcctattgaactcgacataagagttct 17283623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 13200906 - 13200849
Alignment:
Q  41 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    ||||||| |||||||| ||| |||| | |||||||||| |||||||||||||||||||    
T  13200906 tagctaactcatgagcaacctcatttgcttgcctcctaatgaactcgacatgagagtt 13200849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 47783057 - 47783000
Alignment:
Q  41 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  47783057 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 47783000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 9633111 - 9633067
Alignment:
Q  56 cgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||||||||   ||||||||||||||||||||||||||||||||    
T  9633111 cgaccccattcacttgcctcctattgaactcgacatgagagttct 9633067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 35096975 - 35096917
Alignment:
Q  42 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||| || ||||| |||| ||| | |||||| |||||||||||||||||||||||||    
T  35096975 agctaactcgtgagcaaccctatttgcttgccttctattgaactcgacatgagagttct 35096917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 1479285 - 1479333
Alignment:
Q  52 tgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||| |||||||||   |||||||||||||||||||| |||||||||||    
T  1479285 tgagtgaccccatttacttgcctcctattgaactcgatatgagagttct 1479333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 942801 - 942571
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||| |||||||||||| ||||||||||||||| |  ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  942801 tcatcgtaaacgtgggagatagcatgagatggggttgtcctagctaattcacgagcgaccccattggcttgcctcctattgaactcgacattagagttct 942702  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |    
T  942701 gaaaattacaatcgaacaactgcctacaagcctgaataatacaacctagttcactactatcacctaggtttgacttaaaatgttcaacaacagacttgga 942602  T
Q  201 atccaaaacaaaatcaacattgtcataatga 231  Q
    |||||||||||||||||||||||||||||||    
T  942601 atccaaaacaaaatcaacattgtcataatga 942571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 4513178 - 4513081
Alignment:
Q  3 atcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  4513178 atcataaacatgggagctagtatgagatggggctaccctagctaattcattagcgaccccattggcttgcctcctattgaactcgacatgagagttct 4513081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 19047169 - 19047098
Alignment:
Q  27 agatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    |||| |||||||||| |||||||| ||||||||| |||| | |||||||||||| |||||||||||||||||    
T  19047169 agatagggctaccctcgctaattcgtgagcgaccacattagcttgcctcctattaaactcgacatgagagtt 19047098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 13757532 - 13757601
Alignment:
Q  29 atggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    |||| |||| |||||||||||| ||||||||| |||| |||||| || |||| ||||| |||||||||||    
T  13757532 atggagctatcctagctaattcgtgagcgacctcattagtttgcttcttattaaactcaacatgagagtt 13757601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 15950866 - 15950809
Alignment:
Q  41 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  15950866 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 15950809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 41197359 - 41197552
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  41197359 tcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacataagagttct 41197458  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacaga 194  Q
      ||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41197459 gaaaattacaatcgaacaactgtctataagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacaga 41197552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36779406 - 36779622
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||| ||||||||| || ||| ||||||| |||||||||||||| |||||| ||| | ||||| ||||||||||||| ||||||||||||||||||    
T  36779406 tcatcatagacgtgggagctaacat-agatgggactaccctagctaatccatgagtgacactattggcttgcctcctattgtactcgacatgagagttct 36779504  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
       || ||||| | |||||||| |||||||||| ||||||||||||||||||||| || |||  |||||||||||||||| ||||||||| ||||||| |    
T  36779505 g--aattacaaccaaacaactgcctacaagccttaataatacaacctagttcactactctcaattaggtttgaattaaaacgttcaacaatagacttgga 36779602  T
Q  201 atccaaaacaaaatcaacat 220  Q
    |||||||| |||||||||||    
T  36779603 atccaaaataaaatcaacat 36779622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 30376430 - 30376557
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |    
T  30376430 tcatcataaacgttggagctagcatgagatgaggctaccgtagctaattcatgagcgaccctattggcttgcctcctattgaactcgacataagagtttt 30376529  T
Q  101 agaaactacaatcgaacaactgtctaca 128  Q
      ||| || ||||||||||||| |||||    
T  30376530 gaaaattataatcgaacaactgcctaca 30376557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 34905683 - 34905529
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||| ||||| |||||||||||||||||| |||||||    |||||||||||||||||| |||||||||| |||||||||||||| |||  ||||||||    
T  34905683 tcatcgtaaacttgggagttagcatgagatcgggctacttgggctaattcatgagcgacctcattggtttgtctcctattgaactcaacacaagagttct 34905584  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcact 155  Q
      ||||||  | | ||||||||||||||||| || |||| ||||||||| |||||    
T  34905583 gaaaactattaacaaacaactgtctacaagcatgtataacacaacctagctcact 34905529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12378611 - 12378660
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattc 50  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12378611 tcatcataaacgtgggagctagcatgagatggggctaccctagctaattc 12378660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 14856952 - 14857068
Alignment:
Q  28 gatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 127  Q
    ||||||| | || |||||||||||||||||| | |||| ||||||||| |||| ||||||||||||||||| |  || ||   || |||||||||||||     
T  14856952 gatggggatgccttagctaattcatgagcgatcacatttgtttgcctcatattaaactcgacatgagagttttgaaagctttcatggaacaactgtctag 14857051  T
Q  128 aagcctgaataatacaa 144  Q
    |||| | ||||||||||    
T  14857052 aagcattaataatacaa 14857068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 12714850 - 12714949
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||||||||| || ||| ||||||| ||||||| ||||   ||||||| |||| |||||||||| | |||| |||| |||||| | |||||||||||||    
T  12714850 tcatcataaacatgagagctagcatgtgatggggttacctctgctaatttatgaacgaccccattaggttgcttccttttgaacccaacatgagagttct 12714949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 12776081 - 12776180
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    ||||||||||| || ||| ||||||| ||||||| ||||   ||||||| |||| |||||||||| | |||| |||| |||||| | |||||||||||||    
T  12776081 tcatcataaacatgagagctagcatgtgatggggttacctctgctaatttatgaacgaccccattaggttgcttccttttgaacccaacatgagagttct 12776180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 29985530 - 29985437
Alignment:
Q  7 taaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||| ||||||| || |||||  | ||||||||  |||||| || ||| ||||| |||| | ||| || |||||||||||||||||||||||||    
T  29985530 taaatgtgggagctaacatgacctagggctacctgagctaactcgtgaacgacctcattagcttgtcttctattgaactcgacatgagagttct 29985437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 34578 - 34530
Alignment:
Q  52 tgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||  ||||| |||| ||||||| |||||||||||||||||||    
T  34578 tgagcgaccatattggcttgcttcctattaaactcgacatgagagttct 34530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 23820631 - 23820401
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||| ||||||| |||||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  23820631 tcatcataaatgtgggagctagcatgagatggatctaccctatctaattcatgagcgaccccattggcttgcctcctattgaactcgatatgagagttct 23820532  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
      ||| ||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |    
T  23820531 gaaaattacaatcaaacaactgcctacaaacctgaatgatacaacctagttcactactatcacctaggtttgaattaaagtgtacaacaacagacttgga 23820432  T
Q  201 atccaaaacaaaatcaacattgtcataatga 231  Q
    |||||||||||||| ||||| ||||||||||    
T  23820431 atccaaaacaaaattaacatggtcataatga 23820401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24808774 - 24808980
Alignment:
Q  1 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||||    |||||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||| |        |||      
T  24808774 tcatcataaacgtggc---tagcatgagatggggctatcctagctaattcatgagtggccccattggcttgcctcctattgaactag--------gtt-- 24808860  T
Q  101 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgca 200  Q
           |||| | |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||| |    
T  24808861 -------acaaccaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgatcaacaacagacttgga 24808953  T
Q  201 atccaaaacaaaatcaacattgtcata 227  Q
    ||| |||||||||||||||| ||||||    
T  24808954 atctaaaacaaaatcaacatggtcata 24808980  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 21118500 - 21118373
Alignment:
Q  3 atcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctag 102  Q
    ||||||||||| |||| |||||  |||||| ||||||||||||||  |||||| |||| |||| | ||||||||||||||||||||||||||||||||      
T  21118500 atcataaacgttggagctagcaatagatggtgctaccctagctaac-catgagtgacctcattagcttgcctcctattgaactcgacatgagagttctga 21118402  T
Q  103 aaactacaatcgaacaactgtctacaagc 131  Q
    ||||||   || |||||||||||||||||    
T  21118401 aaactattgtcaaacaactgtctacaagc 21118373  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 40901820 - 40901907
Alignment:
Q  13 tgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||| ||||||||||||| ||||||   | ||||||||||||||||  ||| |||||||||||||| |||||||||||||||||||    
T  40901820 tgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagttct 40901907  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 10325110 - 10325166
Alignment:
Q  42 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    |||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  10325110 agctaactcatgagcgacctcattcgtttgcctcctattaaactcgacatgagagtt 10325166  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 12980787 - 12980739
Alignment:
Q  52 tgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  12980787 tgagcgaccccattcgtttgcctcctgttgaactcgacatgagagttct 12980739  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 20492547 - 20492488
Alignment:
Q  42 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttcta 101  Q
    ||||||||| |||||||||| ||| | |||||||||||| ||||||| ||||||||||||    
T  20492547 agctaattcgtgagcgaccctattcgcttgcctcctattaaactcgagatgagagttcta 20492488  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 98
Target Start/End: Complemental strand, 29526894 - 29526837
Alignment:
Q  41 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  29526894 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 29526837  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 8321192 - 8321246
Alignment:
Q  44 ctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    ||||||||||||||||||| || ||||| ||| |||| || ||||||||||||||    
T  8321192 ctaattcatgagcgaccccgtttgtttgtctcgtattaaattcgacatgagagtt 8321246  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 21588151 - 21588208
Alignment:
Q  41 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 98  Q
    ||||||||||||| || ||| |||| | |||||||||| | |||||||||||||||||    
T  21588151 tagctaattcatgtgcaacctcatttgattgcctcctaataaactcgacatgagagtt 21588208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 42029863 - 42029943
Alignment:
Q  46 aattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtcta 126  Q
    |||||| |||||||||||||  |||||||| |||| || || ||||||||||| | |||||||  || ||||| |||||||    
T  42029863 aattcacgagcgaccccattaatttgcctcatattaaattcaacatgagagtttttgaaactattatggaacatctgtcta 42029943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 48198 - 48111
Alignment:
Q  13 tgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 100  Q
    |||||| ||||||||||||| ||||||   | ||||||||||||||||  ||| |||||||||||||| |||||||||||||||||||    
T  48198 tgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagttct 48111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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