View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4562_low_25 (Length: 225)
Name: NF4562_low_25
Description: NF4562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4562_low_25 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 23134874 - 23134650
Alignment:
| Q |
1 |
caagaccacccctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23134874 |
caagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtc |
23134775 |
T |
|
| Q |
101 |
aataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23134774 |
aataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattg |
23134675 |
T |
|
| Q |
201 |
gtgaaactagctatcataaggatga |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
23134674 |
gtgaaactagctatcataaggatga |
23134650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 20282707 - 20282931
Alignment:
| Q |
1 |
caagaccacccctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282707 |
caagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtc |
20282806 |
T |
|
| Q |
101 |
aataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20282807 |
aataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattg |
20282906 |
T |
|
| Q |
201 |
gtgaaactagctatcataaggatga |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
20282907 |
gtgaaactagctatcataaggatga |
20282931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 11895006 - 11895230
Alignment:
| Q |
1 |
caagaccacccctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11895006 |
caagaccacacctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtc |
11895105 |
T |
|
| Q |
101 |
aataatccaacacctgaacccgaccctaattcaagtttcatgctcgccacccccattccaaatgaccaagaagctaaccaccccacaaaagaccaaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11895106 |
aataatccaacacctgaacccgacccgaattcaagtttcatgctcgccacccccattctaaatgaccaagaagctaaccaccccacaaaagaccaaattg |
11895205 |
T |
|
| Q |
201 |
gtgaaactagctatcataaggatga |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11895206 |
gtgaaactagctatcataaggatga |
11895230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 14655975 - 14655859
Alignment:
| Q |
1 |
caagaccacccctgaaccgcacgtgccaaaaacaacccaacagttaccaactaaacaaactaccacaaatgaagttcaagaaaatgatcccaccttagtc |
100 |
Q |
| |
|
|||| |||| ||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||| ||||||| |||| |||||| ||||| | || |
|
|
| T |
14655975 |
caaggccactcctgaaccgcacgtgcctaaaacaactcaacaattaccaaataaacaaactaccactaatgaagctcaaaaaaatgttcccattgttatc |
14655876 |
T |
|
| Q |
101 |
aataatccaacacctga |
117 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
14655875 |
aataatcaaacacctga |
14655859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3974 times since January 2019
Visitors: 8743